| Literature DB >> 21580281 |
Geraldo M de Lima, William T A Harrison, Edward R T Tiekink, James L Wardell, Solange M S V Wardell.
Abstract
The title mol-ecule, C(18)H(16)N(4)S, adopts a U-shape with the aromatic groups lying syn and orientated in the same direction as the thio-phene S atom. The conformation about each of the C=N bonds is E. Overall, the mol-ecule is curved as seen in the dihedral angle of 30.26 (19)° formed between the terminal benzene rings. In the crystal, supra-molecular chains along the c axis are formed by a combination of N-H⋯N hydrogen bonds and N-H⋯π inter-actions.Entities:
Year: 2010 PMID: 21580281 PMCID: PMC2983505 DOI: 10.1107/S1600536810003302
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H16N4S | |
| Mo | |
| Trigonal, | Cell parameters from 8754 reflections |
| Hall symbol: P 32 | θ = 2.9–27.5° |
| µ = 0.20 mm−1 | |
| Rod, yellow | |
| 0.42 × 0.06 × 0.04 mm | |
| Nonius KappaCCD area-detector diffractometer | 3675 independent reflections |
| Radiation source: Enraf Nonius FR591 rotating anode | 3287 reflections with |
| 10 cm confocal mirrors | |
| Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.0° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 11400 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3675 reflections | Δρmax = 0.24 e Å−3 |
| 214 parameters | Δρmin = −0.22 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 1748 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.04 (10) |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.81560 (6) | 0.77053 (6) | 0.68924 (12) | 0.02814 (16) | |
| N1 | 0.68935 (19) | 0.86586 (19) | 0.6256 (4) | 0.0306 (6) | |
| N2 | 0.6286 (2) | 0.9036 (2) | 0.5913 (5) | 0.0333 (6) | |
| H2N | 0.614 (3) | 0.927 (3) | 0.711 (7) | 0.050* | |
| N3 | 0.89915 (18) | 0.63239 (18) | 0.6731 (4) | 0.0297 (6) | |
| N4 | 0.9375 (2) | 0.5714 (2) | 0.6555 (5) | 0.0361 (6) | |
| H4N | 0.963 (3) | 0.563 (3) | 0.782 (7) | 0.054* | |
| C1 | 0.8031 (2) | 0.8521 (2) | 0.8654 (5) | 0.0300 (7) | |
| C2 | 0.8520 (2) | 0.8645 (3) | 1.0644 (5) | 0.0346 (7) | |
| H2 | 0.8543 | 0.9071 | 1.1812 | 0.041* | |
| C3 | 0.8988 (2) | 0.8076 (3) | 1.0785 (5) | 0.0351 (7) | |
| H3 | 0.9360 | 0.8081 | 1.2055 | 0.042* | |
| C4 | 0.8851 (2) | 0.7513 (2) | 0.8902 (5) | 0.0268 (6) | |
| C5 | 0.7407 (2) | 0.8917 (2) | 0.8070 (5) | 0.0299 (6) | |
| H5 | 0.7374 | 0.9380 | 0.9049 | 0.036* | |
| C6 | 0.5620 (2) | 0.8678 (2) | 0.4142 (5) | 0.0331 (7) | |
| C7 | 0.4833 (3) | 0.8868 (3) | 0.4091 (6) | 0.0389 (8) | |
| H7 | 0.4741 | 0.9214 | 0.5294 | 0.047* | |
| C8 | 0.4193 (3) | 0.8546 (3) | 0.2278 (6) | 0.0471 (9) | |
| H8 | 0.3660 | 0.8675 | 0.2242 | 0.056* | |
| C9 | 0.4316 (3) | 0.8040 (3) | 0.0517 (6) | 0.0488 (10) | |
| H9 | 0.3871 | 0.7823 | −0.0720 | 0.059* | |
| C10 | 0.5088 (3) | 0.7852 (3) | 0.0562 (6) | 0.0431 (8) | |
| H10 | 0.5171 | 0.7502 | −0.0647 | 0.052* | |
| C11 | 0.5747 (3) | 0.8169 (2) | 0.2359 (5) | 0.0360 (7) | |
| H11 | 0.6279 | 0.8040 | 0.2374 | 0.043* | |
| C12 | 0.9187 (2) | 0.6824 (2) | 0.8568 (5) | 0.0299 (6) | |
| H12 | 0.9559 | 0.6736 | 0.9714 | 0.036* | |
| C13 | 0.9022 (3) | 0.4977 (2) | 0.4896 (5) | 0.0345 (7) | |
| C14 | 0.8457 (3) | 0.4988 (2) | 0.3078 (5) | 0.0370 (7) | |
| H14 | 0.8257 | 0.5468 | 0.2990 | 0.044* | |
| C15 | 0.8196 (3) | 0.4278 (3) | 0.1403 (6) | 0.0474 (9) | |
| H15 | 0.7811 | 0.4276 | 0.0162 | 0.057* | |
| C16 | 0.8481 (3) | 0.3579 (3) | 0.1506 (7) | 0.0533 (11) | |
| H16 | 0.8311 | 0.3110 | 0.0328 | 0.064* | |
| C17 | 0.9020 (3) | 0.3566 (3) | 0.3340 (7) | 0.0532 (11) | |
| H17 | 0.9202 | 0.3072 | 0.3437 | 0.064* | |
| C18 | 0.9296 (3) | 0.4258 (2) | 0.5029 (6) | 0.0418 (8) | |
| H18 | 0.9671 | 0.4246 | 0.6275 | 0.050* |
| S1 | 0.0322 (4) | 0.0288 (4) | 0.0255 (3) | 0.0168 (4) | 0.0005 (3) | −0.0002 (3) |
| N1 | 0.0320 (14) | 0.0295 (14) | 0.0300 (13) | 0.0151 (12) | 0.0019 (11) | 0.0043 (10) |
| N2 | 0.0406 (16) | 0.0391 (16) | 0.0295 (13) | 0.0268 (14) | −0.0022 (12) | −0.0007 (11) |
| N3 | 0.0242 (13) | 0.0246 (13) | 0.0388 (14) | 0.0111 (11) | 0.0010 (11) | 0.0006 (11) |
| N4 | 0.0395 (16) | 0.0385 (17) | 0.0379 (15) | 0.0252 (14) | −0.0053 (12) | −0.0063 (12) |
| C1 | 0.0312 (17) | 0.0308 (16) | 0.0274 (14) | 0.0150 (14) | 0.0016 (12) | −0.0010 (12) |
| C2 | 0.0378 (18) | 0.0400 (19) | 0.0304 (16) | 0.0228 (16) | −0.0030 (13) | −0.0084 (13) |
| C3 | 0.0350 (18) | 0.044 (2) | 0.0298 (16) | 0.0226 (16) | −0.0032 (13) | −0.0057 (14) |
| C4 | 0.0230 (14) | 0.0280 (15) | 0.0272 (14) | 0.0112 (12) | 0.0024 (11) | 0.0020 (12) |
| C5 | 0.0342 (17) | 0.0300 (16) | 0.0283 (15) | 0.0182 (14) | 0.0002 (12) | −0.0003 (12) |
| C6 | 0.0317 (17) | 0.0304 (17) | 0.0319 (16) | 0.0115 (14) | 0.0039 (13) | 0.0095 (12) |
| C7 | 0.0340 (18) | 0.044 (2) | 0.0395 (18) | 0.0198 (16) | 0.0056 (14) | 0.0091 (15) |
| C8 | 0.0309 (19) | 0.052 (2) | 0.052 (2) | 0.0162 (17) | −0.0004 (16) | 0.0148 (18) |
| C9 | 0.037 (2) | 0.050 (2) | 0.042 (2) | 0.0083 (18) | −0.0089 (16) | 0.0092 (17) |
| C10 | 0.040 (2) | 0.038 (2) | 0.0389 (19) | 0.0102 (16) | 0.0000 (15) | 0.0029 (15) |
| C11 | 0.0335 (17) | 0.0313 (17) | 0.0378 (17) | 0.0122 (15) | 0.0025 (13) | 0.0062 (13) |
| C12 | 0.0244 (15) | 0.0318 (16) | 0.0313 (15) | 0.0124 (13) | 0.0015 (12) | 0.0031 (12) |
| C13 | 0.0378 (18) | 0.0277 (16) | 0.0346 (16) | 0.0137 (14) | 0.0059 (14) | −0.0012 (13) |
| C14 | 0.0415 (19) | 0.0304 (18) | 0.0357 (17) | 0.0154 (16) | −0.0010 (14) | −0.0015 (13) |
| C15 | 0.050 (2) | 0.041 (2) | 0.0405 (19) | 0.0145 (19) | −0.0006 (17) | −0.0031 (16) |
| C16 | 0.069 (3) | 0.033 (2) | 0.050 (2) | 0.020 (2) | 0.002 (2) | −0.0097 (17) |
| C17 | 0.074 (3) | 0.033 (2) | 0.056 (2) | 0.029 (2) | 0.006 (2) | −0.0014 (17) |
| C18 | 0.056 (2) | 0.0297 (17) | 0.0424 (19) | 0.0239 (17) | −0.0019 (17) | −0.0025 (15) |
| S1—C4 | 1.738 (3) | C7—H7 | 0.9500 |
| S1—C1 | 1.736 (3) | C8—C9 | 1.382 (6) |
| N1—C5 | 1.282 (4) | C8—H8 | 0.9500 |
| N1—N2 | 1.361 (4) | C9—C10 | 1.379 (5) |
| N2—C6 | 1.386 (4) | C9—H9 | 0.9500 |
| N2—H2N | 0.88 (4) | C10—C11 | 1.391 (5) |
| N3—C12 | 1.287 (4) | C10—H10 | 0.9500 |
| N3—N4 | 1.362 (4) | C11—H11 | 0.9500 |
| N4—C13 | 1.402 (4) | C12—H12 | 0.9500 |
| N4—H4N | 0.89 (4) | C13—C18 | 1.392 (5) |
| C1—C2 | 1.368 (4) | C13—C14 | 1.400 (5) |
| C1—C5 | 1.436 (4) | C14—C15 | 1.391 (5) |
| C2—C3 | 1.410 (5) | C14—H14 | 0.9500 |
| C2—H2 | 0.9500 | C15—C16 | 1.374 (6) |
| C3—C4 | 1.371 (4) | C15—H15 | 0.9500 |
| C3—H3 | 0.9500 | C16—C17 | 1.383 (6) |
| C4—C12 | 1.431 (4) | C16—H16 | 0.9500 |
| C5—H5 | 0.9500 | C17—C18 | 1.377 (5) |
| C6—C11 | 1.396 (5) | C17—H17 | 0.9500 |
| C6—C7 | 1.405 (5) | C18—H18 | 0.9500 |
| C7—C8 | 1.382 (5) | ||
| C4—S1—C1 | 91.41 (15) | C9—C8—H8 | 119.6 |
| C5—N1—N2 | 116.9 (3) | C10—C9—C8 | 119.8 (3) |
| N1—N2—C6 | 119.0 (3) | C10—C9—H9 | 120.1 |
| N1—N2—H2N | 116 (3) | C8—C9—H9 | 120.1 |
| C6—N2—H2N | 119 (3) | C9—C10—C11 | 120.7 (4) |
| C12—N3—N4 | 115.9 (3) | C9—C10—H10 | 119.6 |
| N3—N4—C13 | 120.0 (3) | C11—C10—H10 | 119.6 |
| N3—N4—H4N | 115 (3) | C10—C11—C6 | 119.6 (3) |
| C13—N4—H4N | 119 (3) | C10—C11—H11 | 120.2 |
| C2—C1—C5 | 126.9 (3) | C6—C11—H11 | 120.2 |
| C2—C1—S1 | 111.3 (2) | N3—C12—C4 | 120.7 (3) |
| C5—C1—S1 | 121.6 (2) | N3—C12—H12 | 119.6 |
| C1—C2—C3 | 113.1 (3) | C4—C12—H12 | 119.6 |
| C1—C2—H2 | 123.5 | C18—C13—C14 | 120.3 (3) |
| C3—C2—H2 | 123.5 | C18—C13—N4 | 118.1 (3) |
| C4—C3—C2 | 113.2 (3) | C14—C13—N4 | 121.5 (3) |
| C4—C3—H3 | 123.4 | C15—C14—C13 | 118.4 (3) |
| C2—C3—H3 | 123.4 | C15—C14—H14 | 120.8 |
| C3—C4—C12 | 126.7 (3) | C13—C14—H14 | 120.8 |
| C3—C4—S1 | 111.0 (2) | C16—C15—C14 | 121.4 (4) |
| C12—C4—S1 | 122.2 (2) | C16—C15—H15 | 119.3 |
| N1—C5—C1 | 121.4 (3) | C14—C15—H15 | 119.3 |
| N1—C5—H5 | 119.3 | C15—C16—C17 | 119.3 (4) |
| C1—C5—H5 | 119.3 | C15—C16—H16 | 120.3 |
| N2—C6—C11 | 120.8 (3) | C17—C16—H16 | 120.3 |
| N2—C6—C7 | 119.5 (3) | C18—C17—C16 | 121.0 (4) |
| C11—C6—C7 | 119.6 (3) | C18—C17—H17 | 119.5 |
| C8—C7—C6 | 119.5 (4) | C16—C17—H17 | 119.5 |
| C8—C7—H7 | 120.2 | C17—C18—C13 | 119.5 (4) |
| C6—C7—H7 | 120.2 | C17—C18—H18 | 120.3 |
| C7—C8—C9 | 120.9 (4) | C13—C18—H18 | 120.3 |
| C7—C8—H8 | 119.6 | ||
| C5—N1—N2—C6 | −171.4 (3) | C7—C8—C9—C10 | 0.0 (5) |
| C12—N3—N4—C13 | 165.1 (3) | C8—C9—C10—C11 | −0.2 (5) |
| C4—S1—C1—C2 | 1.3 (3) | C9—C10—C11—C6 | 0.4 (5) |
| C4—S1—C1—C5 | −173.5 (3) | N2—C6—C11—C10 | −177.5 (3) |
| C5—C1—C2—C3 | 173.6 (3) | C7—C6—C11—C10 | −0.3 (5) |
| S1—C1—C2—C3 | −0.9 (4) | N4—N3—C12—C4 | 177.9 (3) |
| C1—C2—C3—C4 | −0.3 (4) | C3—C4—C12—N3 | 178.5 (3) |
| C2—C3—C4—C12 | −176.8 (3) | S1—C4—C12—N3 | 0.7 (4) |
| C2—C3—C4—S1 | 1.3 (4) | N3—N4—C13—C18 | −168.3 (3) |
| C1—S1—C4—C3 | −1.5 (3) | N3—N4—C13—C14 | 15.3 (5) |
| C1—S1—C4—C12 | 176.7 (3) | C18—C13—C14—C15 | −1.2 (5) |
| N2—N1—C5—C1 | 176.6 (3) | N4—C13—C14—C15 | 175.2 (3) |
| C2—C1—C5—N1 | −171.7 (3) | C13—C14—C15—C16 | −0.1 (6) |
| S1—C1—C5—N1 | 2.2 (4) | C14—C15—C16—C17 | 1.6 (6) |
| N1—N2—C6—C11 | −18.7 (4) | C15—C16—C17—C18 | −1.8 (7) |
| N1—N2—C6—C7 | 164.1 (3) | C16—C17—C18—C13 | 0.5 (6) |
| N2—C6—C7—C8 | 177.3 (3) | C14—C13—C18—C17 | 1.0 (5) |
| C11—C6—C7—C8 | 0.1 (5) | N4—C13—C18—C17 | −175.5 (3) |
| C6—C7—C8—C9 | 0.0 (5) |
| Cg is the centroid of the C6–C11 ring. |
| H··· | ||||
| N2—H2n···N4i | 0.88 (4) | 2.58 (5) | 3.398 (4) | 155 (4) |
| C12—H12···N2ii | 0.95 | 2.57 | 3.463 (5) | 157 |
| N4—H4N···Cgii | 0.89 (4) | 2.81 (5) | 3.415 (4) | 126 (3) |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the C6–C11 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2n⋯N4i | 0.88 (4) | 2.58 (5) | 3.398 (4) | 155 (4) |
| C12—H12⋯N2ii | 0.95 | 2.57 | 3.463 (5) | 157 |
| N4—H4 | 0.89 (4) | 2.81 (5) | 3.415 (4) | 126 (3) |
Symmetry codes: (i) ; (ii) .