Literature DB >> 21580281

(E)-1-Phenyl-2-({5-[(1E)-(2-phenyl-hydrazin-1-yl-idene)meth-yl]-2-thien-yl}methyl-idene)hydrazine.

Geraldo M de Lima, William T A Harrison, Edward R T Tiekink, James L Wardell, Solange M S V Wardell.   

Abstract

The title mol-ecule, C(18)H(16)N(4)S, adopts a U-shape with the aromatic groups lying syn and orientated in the same direction as the thio-phene S atom. The conformation about each of the C=N bonds is E. Overall, the mol-ecule is curved as seen in the dihedral angle of 30.26 (19)° formed between the terminal benzene rings. In the crystal, supra-molecular chains along the c axis are formed by a combination of N-H⋯N hydrogen bonds and N-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21580281      PMCID: PMC2983505          DOI: 10.1107/S1600536810003302

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For specific uses of 2-substituted-thio­phenes as materials, see: Michaleviciute et al. (2007 ▶, 2009 ▶); Kwon et al. (2009 ▶). For their specific uses as biological agents, see: Sonar & Crooks (2009 ▶); Mellado & Cortes (2009 ▶); Satyanarayana et al. (2008 ▶); Lourenço et al. (2007 ▶). For the preparation of hydrazones of thio­phene­carbaldehydes, see: Kwon, et al. (2009 ▶); Wardell et al. (2007 ▶); Vaysse & Pastour (1964 ▶); Novitskii et al. (1961 ▶). For related structures, see: Wardell et al. (2007 ▶, 2010 ▶); Ferreira et al. (2009 ▶); Nogueira et al. (2010 ▶); de Lima et al. (2010 ▶).

Experimental

Crystal data

C18H16N4S M = 320.41 Trigonal, a = 15.6495 (6) Å c = 5.9335 (10) Å V = 1258.5 (2) Å3 Z = 3 Mo Kα radiation μ = 0.20 mm−1 T = 120 K 0.42 × 0.06 × 0.04 mm

Data collection

Nonius KappaCCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.767, T max = 1.000 11400 measured reflections 3675 independent reflections 3287 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.108 S = 1.04 3675 reflections 214 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), 1748 Friedel pairs Flack parameter: 0.04 (10) Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810003302/hg2637sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810003302/hg2637Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H16N4SDx = 1.268 Mg m3
Mr = 320.41Mo Kα radiation, λ = 0.71073 Å
Trigonal, P32Cell parameters from 8754 reflections
Hall symbol: P 32θ = 2.9–27.5°
a = 15.6495 (6) ŵ = 0.20 mm1
c = 5.9335 (10) ÅT = 120 K
V = 1258.5 (2) Å3Rod, yellow
Z = 30.42 × 0.06 × 0.04 mm
F(000) = 504
Nonius KappaCCD area-detector diffractometer3675 independent reflections
Radiation source: Enraf Nonius FR591 rotating anode3287 reflections with I > 2σ(I)
10 cm confocal mirrorsRint = 0.059
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.0°
φ and ω scansh = −20→20
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −20→20
Tmin = 0.767, Tmax = 1.000l = −7→7
11400 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.108w = 1/[σ2(Fo2) + (0.0104P)2 + 1.4032P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
3675 reflectionsΔρmax = 0.24 e Å3
214 parametersΔρmin = −0.22 e Å3
1 restraintAbsolute structure: Flack (1983), 1748 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.04 (10)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.81560 (6)0.77053 (6)0.68924 (12)0.02814 (16)
N10.68935 (19)0.86586 (19)0.6256 (4)0.0306 (6)
N20.6286 (2)0.9036 (2)0.5913 (5)0.0333 (6)
H2N0.614 (3)0.927 (3)0.711 (7)0.050*
N30.89915 (18)0.63239 (18)0.6731 (4)0.0297 (6)
N40.9375 (2)0.5714 (2)0.6555 (5)0.0361 (6)
H4N0.963 (3)0.563 (3)0.782 (7)0.054*
C10.8031 (2)0.8521 (2)0.8654 (5)0.0300 (7)
C20.8520 (2)0.8645 (3)1.0644 (5)0.0346 (7)
H20.85430.90711.18120.041*
C30.8988 (2)0.8076 (3)1.0785 (5)0.0351 (7)
H30.93600.80811.20550.042*
C40.8851 (2)0.7513 (2)0.8902 (5)0.0268 (6)
C50.7407 (2)0.8917 (2)0.8070 (5)0.0299 (6)
H50.73740.93800.90490.036*
C60.5620 (2)0.8678 (2)0.4142 (5)0.0331 (7)
C70.4833 (3)0.8868 (3)0.4091 (6)0.0389 (8)
H70.47410.92140.52940.047*
C80.4193 (3)0.8546 (3)0.2278 (6)0.0471 (9)
H80.36600.86750.22420.056*
C90.4316 (3)0.8040 (3)0.0517 (6)0.0488 (10)
H90.38710.7823−0.07200.059*
C100.5088 (3)0.7852 (3)0.0562 (6)0.0431 (8)
H100.51710.7502−0.06470.052*
C110.5747 (3)0.8169 (2)0.2359 (5)0.0360 (7)
H110.62790.80400.23740.043*
C120.9187 (2)0.6824 (2)0.8568 (5)0.0299 (6)
H120.95590.67360.97140.036*
C130.9022 (3)0.4977 (2)0.4896 (5)0.0345 (7)
C140.8457 (3)0.4988 (2)0.3078 (5)0.0370 (7)
H140.82570.54680.29900.044*
C150.8196 (3)0.4278 (3)0.1403 (6)0.0474 (9)
H150.78110.42760.01620.057*
C160.8481 (3)0.3579 (3)0.1506 (7)0.0533 (11)
H160.83110.31100.03280.064*
C170.9020 (3)0.3566 (3)0.3340 (7)0.0532 (11)
H170.92020.30720.34370.064*
C180.9296 (3)0.4258 (2)0.5029 (6)0.0418 (8)
H180.96710.42460.62750.050*
U11U22U33U12U13U23
S10.0322 (4)0.0288 (4)0.0255 (3)0.0168 (4)0.0005 (3)−0.0002 (3)
N10.0320 (14)0.0295 (14)0.0300 (13)0.0151 (12)0.0019 (11)0.0043 (10)
N20.0406 (16)0.0391 (16)0.0295 (13)0.0268 (14)−0.0022 (12)−0.0007 (11)
N30.0242 (13)0.0246 (13)0.0388 (14)0.0111 (11)0.0010 (11)0.0006 (11)
N40.0395 (16)0.0385 (17)0.0379 (15)0.0252 (14)−0.0053 (12)−0.0063 (12)
C10.0312 (17)0.0308 (16)0.0274 (14)0.0150 (14)0.0016 (12)−0.0010 (12)
C20.0378 (18)0.0400 (19)0.0304 (16)0.0228 (16)−0.0030 (13)−0.0084 (13)
C30.0350 (18)0.044 (2)0.0298 (16)0.0226 (16)−0.0032 (13)−0.0057 (14)
C40.0230 (14)0.0280 (15)0.0272 (14)0.0112 (12)0.0024 (11)0.0020 (12)
C50.0342 (17)0.0300 (16)0.0283 (15)0.0182 (14)0.0002 (12)−0.0003 (12)
C60.0317 (17)0.0304 (17)0.0319 (16)0.0115 (14)0.0039 (13)0.0095 (12)
C70.0340 (18)0.044 (2)0.0395 (18)0.0198 (16)0.0056 (14)0.0091 (15)
C80.0309 (19)0.052 (2)0.052 (2)0.0162 (17)−0.0004 (16)0.0148 (18)
C90.037 (2)0.050 (2)0.042 (2)0.0083 (18)−0.0089 (16)0.0092 (17)
C100.040 (2)0.038 (2)0.0389 (19)0.0102 (16)0.0000 (15)0.0029 (15)
C110.0335 (17)0.0313 (17)0.0378 (17)0.0122 (15)0.0025 (13)0.0062 (13)
C120.0244 (15)0.0318 (16)0.0313 (15)0.0124 (13)0.0015 (12)0.0031 (12)
C130.0378 (18)0.0277 (16)0.0346 (16)0.0137 (14)0.0059 (14)−0.0012 (13)
C140.0415 (19)0.0304 (18)0.0357 (17)0.0154 (16)−0.0010 (14)−0.0015 (13)
C150.050 (2)0.041 (2)0.0405 (19)0.0145 (19)−0.0006 (17)−0.0031 (16)
C160.069 (3)0.033 (2)0.050 (2)0.020 (2)0.002 (2)−0.0097 (17)
C170.074 (3)0.033 (2)0.056 (2)0.029 (2)0.006 (2)−0.0014 (17)
C180.056 (2)0.0297 (17)0.0424 (19)0.0239 (17)−0.0019 (17)−0.0025 (15)
S1—C41.738 (3)C7—H70.9500
S1—C11.736 (3)C8—C91.382 (6)
N1—C51.282 (4)C8—H80.9500
N1—N21.361 (4)C9—C101.379 (5)
N2—C61.386 (4)C9—H90.9500
N2—H2N0.88 (4)C10—C111.391 (5)
N3—C121.287 (4)C10—H100.9500
N3—N41.362 (4)C11—H110.9500
N4—C131.402 (4)C12—H120.9500
N4—H4N0.89 (4)C13—C181.392 (5)
C1—C21.368 (4)C13—C141.400 (5)
C1—C51.436 (4)C14—C151.391 (5)
C2—C31.410 (5)C14—H140.9500
C2—H20.9500C15—C161.374 (6)
C3—C41.371 (4)C15—H150.9500
C3—H30.9500C16—C171.383 (6)
C4—C121.431 (4)C16—H160.9500
C5—H50.9500C17—C181.377 (5)
C6—C111.396 (5)C17—H170.9500
C6—C71.405 (5)C18—H180.9500
C7—C81.382 (5)
C4—S1—C191.41 (15)C9—C8—H8119.6
C5—N1—N2116.9 (3)C10—C9—C8119.8 (3)
N1—N2—C6119.0 (3)C10—C9—H9120.1
N1—N2—H2N116 (3)C8—C9—H9120.1
C6—N2—H2N119 (3)C9—C10—C11120.7 (4)
C12—N3—N4115.9 (3)C9—C10—H10119.6
N3—N4—C13120.0 (3)C11—C10—H10119.6
N3—N4—H4N115 (3)C10—C11—C6119.6 (3)
C13—N4—H4N119 (3)C10—C11—H11120.2
C2—C1—C5126.9 (3)C6—C11—H11120.2
C2—C1—S1111.3 (2)N3—C12—C4120.7 (3)
C5—C1—S1121.6 (2)N3—C12—H12119.6
C1—C2—C3113.1 (3)C4—C12—H12119.6
C1—C2—H2123.5C18—C13—C14120.3 (3)
C3—C2—H2123.5C18—C13—N4118.1 (3)
C4—C3—C2113.2 (3)C14—C13—N4121.5 (3)
C4—C3—H3123.4C15—C14—C13118.4 (3)
C2—C3—H3123.4C15—C14—H14120.8
C3—C4—C12126.7 (3)C13—C14—H14120.8
C3—C4—S1111.0 (2)C16—C15—C14121.4 (4)
C12—C4—S1122.2 (2)C16—C15—H15119.3
N1—C5—C1121.4 (3)C14—C15—H15119.3
N1—C5—H5119.3C15—C16—C17119.3 (4)
C1—C5—H5119.3C15—C16—H16120.3
N2—C6—C11120.8 (3)C17—C16—H16120.3
N2—C6—C7119.5 (3)C18—C17—C16121.0 (4)
C11—C6—C7119.6 (3)C18—C17—H17119.5
C8—C7—C6119.5 (4)C16—C17—H17119.5
C8—C7—H7120.2C17—C18—C13119.5 (4)
C6—C7—H7120.2C17—C18—H18120.3
C7—C8—C9120.9 (4)C13—C18—H18120.3
C7—C8—H8119.6
C5—N1—N2—C6−171.4 (3)C7—C8—C9—C100.0 (5)
C12—N3—N4—C13165.1 (3)C8—C9—C10—C11−0.2 (5)
C4—S1—C1—C21.3 (3)C9—C10—C11—C60.4 (5)
C4—S1—C1—C5−173.5 (3)N2—C6—C11—C10−177.5 (3)
C5—C1—C2—C3173.6 (3)C7—C6—C11—C10−0.3 (5)
S1—C1—C2—C3−0.9 (4)N4—N3—C12—C4177.9 (3)
C1—C2—C3—C4−0.3 (4)C3—C4—C12—N3178.5 (3)
C2—C3—C4—C12−176.8 (3)S1—C4—C12—N30.7 (4)
C2—C3—C4—S11.3 (4)N3—N4—C13—C18−168.3 (3)
C1—S1—C4—C3−1.5 (3)N3—N4—C13—C1415.3 (5)
C1—S1—C4—C12176.7 (3)C18—C13—C14—C15−1.2 (5)
N2—N1—C5—C1176.6 (3)N4—C13—C14—C15175.2 (3)
C2—C1—C5—N1−171.7 (3)C13—C14—C15—C16−0.1 (6)
S1—C1—C5—N12.2 (4)C14—C15—C16—C171.6 (6)
N1—N2—C6—C11−18.7 (4)C15—C16—C17—C18−1.8 (7)
N1—N2—C6—C7164.1 (3)C16—C17—C18—C130.5 (6)
N2—C6—C7—C8177.3 (3)C14—C13—C18—C171.0 (5)
C11—C6—C7—C80.1 (5)N4—C13—C18—C17−175.5 (3)
C6—C7—C8—C90.0 (5)
Cg is the centroid of the C6–C11 ring.
D—H···AD—HH···AD···AD—H···A
N2—H2n···N4i0.88 (4)2.58 (5)3.398 (4)155 (4)
C12—H12···N2ii0.952.573.463 (5)157
N4—H4N···Cgii0.89 (4)2.81 (5)3.415 (4)126 (3)
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C6–C11 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2n⋯N4i0.88 (4)2.58 (5)3.398 (4)155 (4)
C12—H12⋯N2ii0.952.573.463 (5)157
N4—H4NCgii0.89 (4)2.81 (5)3.415 (4)126 (3)

Symmetry codes: (i) ; (ii) .

  7 in total

1.  Synthesis and biological evaluation of N-(aryl)-2-thiophen-2-ylacetamides series as a new class of antitubercular agents.

Authors:  Maria Cristina Silva Lourenço; Felipe Rodrigues Vicente; Maria das Graças Muller de Oliveira Henriques; André Luis Peixoto Candéa; Raoni Schroeder Borges Gonçalves; Thais Cristina M Nogueira; Marcelle de Lima Ferreira; Marcus Vinícius Nora de Souza
Journal:  Bioorg Med Chem Lett       Date:  2007-10-04       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  5-{[(E)-2-(4-Iodo-phen-yl)hydrazinyl-idene]meth-yl}thio-phene-2-carbaldehyde.

Authors:  Solange M S V Wardell; Geraldo M de Lima; Edward R T Tiekink; James L Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-09

4.  N-(2,6-Dimethyl-phen-yl)-2-(2-thien-yl)acetamide.

Authors:  Marcelle Ferreira de Lima; Marcus V N de Souza; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-25

5.  Synthesis and antitubercular activity of a series of hydrazone and nitrovinyl analogs derived from heterocyclic aldehydes.

Authors:  Vijayakumar N Sonar; Peter A Crooks
Journal:  J Enzyme Inhib Med Chem       Date:  2009-02       Impact factor: 5.051

6.  N-(4-Bromo-phen-yl)-2-(2-thien-yl)acetamide.

Authors:  Thais C M Nogueira; Marcus V N de Souza; James L Wardell; Solange M S V Wardell; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-16

7.  (E)-1-(3-Nitro-phen-yl)-2-({5-[(1E)-2-(3-nitro-phen-yl)hydrazin-1-ylidenemeth-yl]-2-thien-yl}methyl-idene)hydrazine.

Authors:  Geraldo M de Lima; William T A Harrison; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-27
  7 in total
  1 in total

1.  2,5-Bis{[(-)-(S)-1-(4-methyl-phen-yl)eth-yl]imino-meth-yl}thio-phene.

Authors:  Sylvain Bernès; Guadalupe Hernández-Téllez; Manju Sharma; Oscar Portillo-Moreno; René Gutiérrez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-14
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.