Literature DB >> 21579872

(E)-1-(3-Nitro-phen-yl)-2-({5-[(1E)-2-(3-nitro-phen-yl)hydrazin-1-ylidenemeth-yl]-2-thien-yl}methyl-idene)hydrazine.

Geraldo M de Lima, William T A Harrison, Edward R T Tiekink, James L Wardell, Solange M S V Wardell.   

Abstract

The title mol-ecule, C(18)H(14)N(6)O(4)S, adopts a U-shape with the aromatic groups lying syn and oriented in the same direction as the thio-phene S atom. Twists away from planarity are evident with the maximum deviation being found for a terminal nitro group: C/C/N/O = 19.0 (3)°. The conformation about each of the C=N bonds is E. In the crystal, centrosymmetrically related mol-ecules are connected via N-H⋯O(nitro) hydrogen bonds, forming 14-membered {⋯HNC(3)NO}(2) synthons. These are linked into layers via C-H⋯O(nitro) inter-actions with the primary inter-actions between layers being of the type C-H⋯π, where the π-system is the thio-phene ring.

Entities:  

Year:  2010        PMID: 21579872      PMCID: PMC2979791          DOI: 10.1107/S1600536810002771

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of hydrazones of thio­phene­carbaldehydes, see: Kwon et al. (2009 ▶); Wardell et al. (2007 ▶); Vaysse & Pastour (1964 ▶). For general uses of 2-substituted-thio­phenes, see: Campaigne (1984 ▶). For their specific uses as materials, see: Michaleviciute et al. (2007 ▶, 2009 ▶); Kwon et al. (2009 ▶). For their specific uses as pharmacological agents, see: Kleemann et al. (2006 ▶); Sonar & Crooks (2009 ▶); Mellado et al. (2009 ▶); Satyanarayana et al. (2008 ▶); Lourenço et al. (2007 ▶). For related structures, see: Wardell et al. (2007 ▶, 2010 ▶); Ferreira et al. (2009 ▶); Nogueira et al. (2010 ▶).

Experimental

Crystal data

C18H14N6O4S M = 410.41 Monoclinic, a = 11.1790 (5) Å b = 20.6993 (9) Å c = 8.0334 (2) Å β = 100.513 (2)° V = 1827.70 (12) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 120 K 0.62 × 0.10 × 0.06 mm

Data collection

Nonius KappaCCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.668, T max = 0.746 21780 measured reflections 4183 independent reflections 3001 reflections with I > 2σ(I) R int = 0.071

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.133 S = 1.08 4183 reflections 268 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.34 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810002771/hg2635sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810002771/hg2635Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H14N6O4SF(000) = 848
Mr = 410.41Dx = 1.492 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 13699 reflections
a = 11.1790 (5) Åθ = 2.9–27.5°
b = 20.6993 (9) ŵ = 0.22 mm1
c = 8.0334 (2) ÅT = 120 K
β = 100.513 (2)°Rod, red
V = 1827.70 (12) Å30.62 × 0.10 × 0.06 mm
Z = 4
KappaCCD area-detector diffractometer4183 independent reflections
Radiation source: Enraf Nonius FR591 rotating anode3001 reflections with I > 2σ(I)
10 cm confocal mirrorsRint = 0.071
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.1°
φ and ω scansh = −14→14
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −26→26
Tmin = 0.668, Tmax = 0.746l = −10→9
21780 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0678P)2 + 0.3581P] where P = (Fo2 + 2Fc2)/3
4183 reflections(Δ/σ)max = 0.001
268 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.51694 (5)0.64771 (3)0.10731 (6)0.01767 (15)
O10.86026 (16)0.47833 (10)1.1894 (2)0.0440 (5)
O20.66466 (16)0.47631 (9)1.16581 (19)0.0344 (4)
O31.09960 (18)0.66615 (11)−0.6358 (3)0.0553 (6)
O40.91528 (19)0.66409 (11)−0.7736 (2)0.0519 (6)
N10.50139 (16)0.59578 (9)0.4425 (2)0.0182 (4)
N20.50940 (17)0.56838 (9)0.5969 (2)0.0191 (4)
H2N0.446 (2)0.5655 (12)0.649 (3)0.029*
N30.75746 (18)0.48377 (10)1.1061 (2)0.0267 (5)
N40.60955 (16)0.69295 (9)−0.1986 (2)0.0181 (4)
N50.65934 (16)0.70405 (9)−0.3383 (2)0.0184 (4)
H5N0.611 (2)0.7106 (11)−0.442 (3)0.028*
N60.9889 (2)0.66605 (11)−0.6418 (3)0.0340 (5)
C10.38972 (19)0.64722 (10)0.2032 (2)0.0171 (4)
C20.29149 (19)0.67487 (10)0.1014 (3)0.0194 (5)
H20.21370.67870.13220.023*
C30.31778 (19)0.69709 (10)−0.0543 (2)0.0186 (4)
H30.25960.7175−0.13890.022*
C40.43575 (19)0.68609 (10)−0.0706 (2)0.0173 (4)
C50.3983 (2)0.61919 (10)0.3698 (2)0.0189 (5)
H50.32970.61810.42420.023*
C60.6201 (2)0.54271 (10)0.6765 (3)0.0184 (5)
C70.6332 (2)0.52533 (10)0.8470 (3)0.0189 (5)
H70.56800.53030.90690.023*
C80.7441 (2)0.50061 (11)0.9255 (2)0.0208 (5)
C90.8416 (2)0.49104 (11)0.8444 (3)0.0245 (5)
H90.91650.47400.90280.029*
C100.8256 (2)0.50743 (11)0.6740 (3)0.0240 (5)
H100.89030.50080.61400.029*
C110.7166 (2)0.53338 (10)0.5900 (3)0.0216 (5)
H110.70760.54480.47380.026*
C120.49410 (19)0.70092 (10)−0.2128 (2)0.0174 (4)
H120.44740.7164−0.31590.021*
C130.77989 (19)0.68714 (10)−0.3355 (2)0.0162 (4)
C140.8226 (2)0.68469 (10)−0.4875 (3)0.0193 (5)
H140.77030.6936−0.59210.023*
C150.9433 (2)0.66899 (11)−0.4818 (3)0.0223 (5)
C161.0241 (2)0.65534 (12)−0.3337 (3)0.0264 (5)
H161.10690.6452−0.33450.032*
C170.9786 (2)0.65709 (11)−0.1840 (3)0.0253 (5)
H171.03110.6473−0.08020.030*
C180.8583 (2)0.67280 (10)−0.1833 (3)0.0200 (5)
H180.82890.6738−0.07960.024*
U11U22U33U12U13U23
S10.0173 (3)0.0206 (3)0.0161 (3)0.0015 (2)0.00585 (19)0.0015 (2)
O10.0278 (11)0.0719 (15)0.0297 (10)0.0132 (10)−0.0019 (8)0.0147 (9)
O20.0306 (10)0.0526 (12)0.0217 (8)0.0002 (8)0.0090 (7)0.0075 (7)
O30.0333 (12)0.0913 (18)0.0497 (12)0.0191 (11)0.0300 (10)0.0196 (11)
O40.0481 (13)0.0905 (17)0.0198 (10)0.0207 (11)0.0136 (9)0.0044 (9)
N10.0241 (10)0.0195 (10)0.0122 (8)−0.0030 (8)0.0065 (7)−0.0013 (7)
N20.0215 (10)0.0240 (10)0.0132 (8)−0.0002 (8)0.0069 (7)0.0020 (7)
N30.0290 (12)0.0286 (11)0.0230 (10)0.0034 (9)0.0061 (9)0.0030 (8)
N40.0212 (10)0.0197 (10)0.0152 (9)−0.0012 (8)0.0080 (7)−0.0006 (7)
N50.0165 (9)0.0272 (10)0.0126 (9)0.0029 (8)0.0052 (7)0.0040 (7)
N60.0326 (13)0.0449 (14)0.0297 (12)0.0129 (10)0.0192 (10)0.0116 (9)
C10.0188 (11)0.0167 (11)0.0171 (10)−0.0050 (9)0.0070 (8)−0.0024 (8)
C20.0161 (11)0.0241 (12)0.0186 (11)−0.0013 (9)0.0051 (8)−0.0013 (8)
C30.0172 (11)0.0227 (11)0.0154 (10)−0.0010 (9)0.0020 (8)0.0006 (8)
C40.0204 (11)0.0164 (11)0.0148 (10)−0.0018 (9)0.0025 (8)−0.0001 (8)
C50.0208 (11)0.0198 (11)0.0174 (10)−0.0039 (9)0.0068 (8)−0.0021 (8)
C60.0212 (12)0.0151 (11)0.0190 (10)−0.0044 (9)0.0042 (8)−0.0020 (8)
C70.0219 (12)0.0176 (11)0.0181 (10)−0.0018 (9)0.0063 (8)−0.0009 (8)
C80.0258 (13)0.0207 (12)0.0156 (10)−0.0034 (9)0.0032 (9)0.0009 (8)
C90.0202 (12)0.0260 (13)0.0274 (12)0.0003 (10)0.0049 (9)0.0012 (9)
C100.0211 (12)0.0261 (13)0.0274 (12)−0.0029 (10)0.0112 (9)0.0001 (9)
C110.0245 (12)0.0225 (12)0.0186 (11)−0.0053 (9)0.0059 (9)0.0009 (8)
C120.0190 (11)0.0183 (11)0.0150 (10)0.0006 (9)0.0033 (8)−0.0009 (8)
C130.0173 (11)0.0163 (11)0.0162 (10)−0.0012 (8)0.0061 (8)0.0001 (8)
C140.0200 (12)0.0201 (11)0.0186 (10)0.0004 (9)0.0060 (8)0.0031 (8)
C150.0237 (12)0.0255 (12)0.0207 (11)0.0030 (9)0.0116 (9)0.0019 (8)
C160.0149 (11)0.0340 (14)0.0313 (12)0.0040 (10)0.0070 (9)0.0018 (10)
C170.0193 (12)0.0349 (14)0.0196 (11)0.0007 (10)−0.0016 (9)−0.0011 (9)
C180.0234 (12)0.0236 (12)0.0137 (10)−0.0002 (9)0.0050 (8)−0.0002 (8)
S1—C11.737 (2)C5—H50.9500
S1—C41.739 (2)C6—C111.399 (3)
O1—N31.225 (3)C6—C71.398 (3)
O2—N31.229 (2)C7—C81.382 (3)
O3—N61.230 (3)C7—H70.9500
O4—N61.217 (3)C8—C91.382 (3)
N1—C51.288 (3)C9—C101.390 (3)
N1—N21.352 (2)C9—H90.9500
N2—C61.391 (3)C10—C111.389 (3)
N2—H2N0.89 (3)C10—H100.9500
N3—C81.473 (3)C11—H110.9500
N4—C121.285 (3)C12—H120.9500
N4—N51.360 (2)C13—C141.391 (3)
N5—C131.389 (3)C13—C181.400 (3)
N5—H5N0.92 (2)C14—C151.380 (3)
N6—C151.468 (3)C14—H140.9500
C1—C21.369 (3)C15—C161.385 (3)
C1—C51.445 (3)C16—C171.388 (3)
C2—C31.413 (3)C16—H160.9500
C2—H20.9500C17—C181.385 (3)
C3—C41.368 (3)C17—H170.9500
C3—H30.9500C18—H180.9500
C4—C121.449 (3)
C1—S1—C491.17 (10)C6—C7—H7121.1
C5—N1—N2118.56 (18)C9—C8—C7123.82 (19)
N1—N2—C6119.09 (18)C9—C8—N3118.9 (2)
N1—N2—H2N122.5 (16)C7—C8—N3117.29 (19)
C6—N2—H2N118.4 (16)C8—C9—C10117.3 (2)
O1—N3—O2123.37 (19)C8—C9—H9121.4
O1—N3—C8118.43 (19)C10—C9—H9121.4
O2—N3—C8118.20 (19)C9—C10—C11121.2 (2)
C12—N4—N5117.41 (17)C9—C10—H10119.4
N4—N5—C13119.06 (17)C11—C10—H10119.4
N4—N5—H5N121.3 (16)C10—C11—C6119.9 (2)
C13—N5—H5N117.1 (16)C10—C11—H11120.0
O4—N6—O3123.4 (2)C6—C11—H11120.0
O4—N6—C15118.4 (2)N4—C12—C4119.47 (18)
O3—N6—C15118.2 (2)N4—C12—H12120.3
C2—C1—C5129.17 (19)C4—C12—H12120.3
C2—C1—S1111.39 (15)N5—C13—C14118.84 (18)
C5—C1—S1119.43 (16)N5—C13—C18121.25 (18)
C1—C2—C3113.04 (19)C14—C13—C18119.9 (2)
C1—C2—H2123.5C15—C14—C13118.01 (19)
C3—C2—H2123.5C15—C14—H14121.0
C4—C3—C2112.95 (19)C13—C14—H14121.0
C4—C3—H3123.5C14—C15—C16123.8 (2)
C2—C3—H3123.5C14—C15—N6118.30 (19)
C3—C4—C12128.36 (19)C16—C15—N6117.9 (2)
C3—C4—S1111.45 (15)C15—C16—C17117.0 (2)
C12—C4—S1120.17 (16)C15—C16—H16121.5
N1—C5—C1118.30 (19)C17—C16—H16121.5
N1—C5—H5120.9C18—C17—C16121.3 (2)
C1—C5—H5120.9C18—C17—H17119.4
N2—C6—C11121.80 (19)C16—C17—H17119.4
N2—C6—C7118.27 (19)C17—C18—C13119.98 (19)
C11—C6—C7119.9 (2)C17—C18—H18120.0
C8—C7—C6117.9 (2)C13—C18—H18120.0
C8—C7—H7121.1
C5—N1—N2—C6179.76 (19)N3—C8—C9—C10179.9 (2)
C12—N4—N5—C13−170.79 (19)C8—C9—C10—C111.1 (3)
C4—S1—C1—C20.37 (17)C9—C10—C11—C6−0.8 (3)
C4—S1—C1—C5179.95 (17)N2—C6—C11—C10−179.8 (2)
C5—C1—C2—C3−179.9 (2)C7—C6—C11—C10−0.6 (3)
S1—C1—C2—C3−0.4 (2)N5—N4—C12—C4176.44 (18)
C1—C2—C3—C40.2 (3)C3—C4—C12—N4173.0 (2)
C2—C3—C4—C12178.6 (2)S1—C4—C12—N4−8.6 (3)
C2—C3—C4—S10.1 (2)N4—N5—C13—C14165.61 (18)
C1—S1—C4—C3−0.26 (17)N4—N5—C13—C18−14.5 (3)
C1—S1—C4—C12−178.90 (17)N5—C13—C14—C15178.8 (2)
N2—N1—C5—C1−178.75 (17)C18—C13—C14—C15−1.1 (3)
C2—C1—C5—N1−180.0 (2)C13—C14—C15—C160.2 (3)
S1—C1—C5—N10.5 (3)C13—C14—C15—N6179.7 (2)
N1—N2—C6—C11−12.2 (3)O4—N6—C15—C14−15.1 (3)
N1—N2—C6—C7168.57 (18)O3—N6—C15—C14164.4 (2)
N2—C6—C7—C8−179.20 (19)O4—N6—C15—C16164.5 (2)
C11—C6—C7—C81.5 (3)O3—N6—C15—C16−16.0 (3)
C6—C7—C8—C9−1.2 (3)C14—C15—C16—C170.8 (4)
C6—C7—C8—N3178.75 (18)N6—C15—C16—C17−178.7 (2)
O1—N3—C8—C919.0 (3)C15—C16—C17—C18−1.0 (4)
O2—N3—C8—C9−161.5 (2)C16—C17—C18—C130.1 (3)
O1—N3—C8—C7−161.0 (2)N5—C13—C18—C17−178.9 (2)
O2—N3—C8—C718.6 (3)C14—C13—C18—C170.9 (3)
C7—C8—C9—C10−0.1 (3)
Cg1 is the centroid of the S1,C1–C4 ring.
D—H···AD—HH···AD···AD—H···A
N2—H2n···O2i0.89 (2)2.27 (2)3.103 (2)156 (2)
C2—H2···O3ii0.952.463.278 (3)145
C18—H18···O4iii0.952.483.241 (3)137
C12—H12···Cg1iv0.952.583.323 (2)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2n⋯O2i0.89 (2)2.27 (2)3.103 (2)156 (2)
C2—H2⋯O3ii0.952.463.278 (3)145
C18—H18⋯O4iii0.952.483.241 (3)137
C12—H12⋯Cg1iv0.952.583.323 (2)135

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  Synthesis and biological evaluation of N-(aryl)-2-thiophen-2-ylacetamides series as a new class of antitubercular agents.

Authors:  Maria Cristina Silva Lourenço; Felipe Rodrigues Vicente; Maria das Graças Muller de Oliveira Henriques; André Luis Peixoto Candéa; Raoni Schroeder Borges Gonçalves; Thais Cristina M Nogueira; Marcelle de Lima Ferreira; Marcus Vinícius Nora de Souza
Journal:  Bioorg Med Chem Lett       Date:  2007-10-04       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  5-{[(E)-2-(4-Iodo-phen-yl)hydrazinyl-idene]meth-yl}thio-phene-2-carbaldehyde.

Authors:  Solange M S V Wardell; Geraldo M de Lima; Edward R T Tiekink; James L Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-09

4.  N-(2,6-Dimethyl-phen-yl)-2-(2-thien-yl)acetamide.

Authors:  Marcelle Ferreira de Lima; Marcus V N de Souza; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-25

5.  Synthesis and antitubercular activity of a series of hydrazone and nitrovinyl analogs derived from heterocyclic aldehydes.

Authors:  Vijayakumar N Sonar; Peter A Crooks
Journal:  J Enzyme Inhib Med Chem       Date:  2009-02       Impact factor: 5.051

6.  N-(4-Bromo-phen-yl)-2-(2-thien-yl)acetamide.

Authors:  Thais C M Nogueira; Marcus V N de Souza; James L Wardell; Solange M S V Wardell; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-16
  6 in total
  1 in total

1.  (E)-1-Phenyl-2-({5-[(1E)-(2-phenyl-hydrazin-1-yl-idene)meth-yl]-2-thien-yl}methyl-idene)hydrazine.

Authors:  Geraldo M de Lima; William T A Harrison; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-03
  1 in total

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