Literature DB >> 21580277

μ-Succinato-bis-[aqua-(2,2':6',2''-terpyridine)copper(II)] dinitrate dihydrate.

Chongzhen Mei1, Qingduo Lei, Peng Zhang.   

Abstract

The title compound, [Cu(2)(C(4)H(4)O(4))(C(15)H(11)N(3))(2)(H(2)O)(2)](NO(3))(2)·2H(2)O, was synthesized under hydro-thermal conditions. The dinuclear copper complex is located on a crystallographic inversion centre. The Cu(II) ion is penta-coordinated in a tetra-gonal-pyramidal geometry, with one O atom of a succinate dianion and three N atoms of a 2,2':6',2''-terpyridine ligand occupying the basal plane, and a water O atom located at the apical site. In the crystal structure, O-H⋯O hydrogen bonding links the mol-ecules into a chain parallel to the a axis.

Entities:  

Year:  2010        PMID: 21580277      PMCID: PMC2983631          DOI: 10.1107/S1600536810006811

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the use of saturated aliphatic carboxyl­ate ligands in the preparation of metal-organic complexes, see: Brusau et al. (2000 ▶); Rastsvetaeva et al. (1996 ▶). For related structures, see: Li et al. (2009 ▶); Ke et al. (2009 ▶); Jin et al. (2008 ▶); He & Huang (2008 ▶); He et al. (2007 ▶); Duangthongyou & Siripaisarnpipat (2008 ▶); Liu (2009 ▶); Ng (1998 ▶).

Experimental

Crystal data

[Cu2(C4H4O4)(C15H11N3)2(H2O)2](NO3)2·2H2O M = 905.77 Triclinic, a = 7.397 (4) Å b = 10.650 (5) Å c = 12.574 (6) Å α = 70.196 (9)° β = 83.512 (9)° γ = 83.836 (10)° V = 923.5 (8) Å3 Z = 1 Mo Kα radiation μ = 1.23 mm−1 T = 296 K 0.34 × 0.32 × 0.28 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.679, T max = 0.724 4998 measured reflections 3211 independent reflections 2951 reflections with I > 2σ(I) R int = 0.096

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.137 S = 0.98 3211 reflections 263 parameters H-atom parameters constrained Δρmax = 0.70 e Å−3 Δρmin = −0.67 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810006811/kj2141sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810006811/kj2141Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2(C4H4O4)(C15H11N3)2(H2O)2](NO3)2·2H2OZ = 1
Mr = 905.77F(000) = 464
Triclinic, P1Dx = 1.629 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.397 (4) ÅCell parameters from 4421 reflections
b = 10.650 (5) Åθ = 3.3–28.0°
c = 12.574 (6) ŵ = 1.23 mm1
α = 70.196 (9)°T = 296 K
β = 83.512 (9)°Block, colourless
γ = 83.836 (10)°0.34 × 0.32 × 0.28 mm
V = 923.5 (8) Å3
Bruker SMART APEXII CCD area-detector diffractometer3211 independent reflections
Radiation source: fine-focus sealed tube2951 reflections with I > 2σ(I)
graphiteRint = 0.096
phi and ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.679, Tmax = 0.724k = −12→11
4998 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H-atom parameters constrained
wR(F2) = 0.137w = 1/[σ2(Fo2) + (0.1057P)2 + 0.320P] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max < 0.001
3211 reflectionsΔρmax = 0.70 e Å3
263 parametersΔρmin = −0.67 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.086 (7)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.24585 (4)0.64732 (3)0.22948 (2)0.0286 (2)
O1W0.5317 (3)0.5692 (3)0.1875 (2)0.0493 (6)
H1WA0.63820.59710.17170.059*
H1WB0.52960.50650.16030.059*
N20.2116 (3)0.4762 (3)0.3654 (2)0.0341 (6)
N30.2929 (3)0.7096 (3)0.3510 (2)0.0334 (6)
N40.2612 (4)0.8463 (3)0.1423 (2)0.0356 (6)
C10.1650 (5)0.3580 (4)0.3636 (3)0.0448 (8)
H10.14500.34990.29460.054*
C20.1462 (5)0.2482 (4)0.4615 (4)0.0540 (9)
H20.11500.16740.45810.065*
C30.1743 (5)0.2605 (4)0.5637 (3)0.0573 (10)
H30.16120.18820.63040.069*
C40.2222 (5)0.3814 (4)0.5667 (3)0.0501 (9)
H40.24220.39140.63510.060*
C50.2399 (4)0.4875 (3)0.4657 (3)0.0371 (7)
C60.2890 (4)0.6223 (3)0.4581 (3)0.0360 (7)
C70.3259 (5)0.6642 (4)0.5456 (3)0.0495 (9)
H70.32560.60490.61950.059*
C80.3633 (5)0.7967 (5)0.5210 (3)0.0558 (10)
H80.38830.82600.57930.067*
C90.3642 (5)0.8862 (4)0.4107 (4)0.0516 (9)
H90.38980.97470.39420.062*
C100.3253 (4)0.8388 (3)0.3258 (3)0.0381 (7)
C110.3088 (4)0.9175 (3)0.2045 (3)0.0378 (7)
C120.3356 (5)1.0526 (3)0.1567 (3)0.0509 (9)
H120.37091.09980.20010.061*
C130.3088 (5)1.1167 (4)0.0423 (4)0.0569 (10)
H130.32671.20720.00830.068*
C140.2558 (5)1.0446 (4)−0.0195 (3)0.0526 (9)
H140.23421.0863−0.09530.063*
C150.2352 (5)0.9106 (3)0.0317 (3)0.0427 (8)
H150.20200.8621−0.01130.051*
O10.1725 (3)0.5935 (2)0.11084 (18)0.0346 (5)
O2−0.1129 (3)0.6332 (2)0.17197 (19)0.0418 (5)
C16−0.0007 (4)0.5965 (3)0.1065 (2)0.0288 (6)
C17−0.0602 (4)0.5554 (3)0.0128 (3)0.0388 (7)
H17A−0.18340.52720.03370.047*
H17B−0.06320.6329−0.05560.047*
N10.1320 (5)0.8852 (4)0.7310 (3)0.0583 (9)
O30.2712 (7)0.9214 (6)0.7484 (4)0.1279 (18)
O40.0270 (5)0.9562 (4)0.6617 (3)0.0940 (12)
O50.1130 (8)0.7657 (4)0.7705 (4)0.1219 (17)
O2W0.5518 (4)0.3538 (3)0.1018 (3)0.0623 (7)
H2WA0.61840.28250.13020.075*
H2WB0.60290.39630.03740.075*
U11U22U33U12U13U23
Cu10.0298 (3)0.0333 (3)0.0296 (3)0.00097 (16)−0.00715 (15)−0.01870 (17)
O1W0.0279 (11)0.0587 (15)0.0753 (16)0.0008 (10)0.0012 (11)−0.0434 (13)
N20.0310 (13)0.0389 (13)0.0353 (13)0.0019 (11)−0.0049 (10)−0.0166 (11)
N30.0310 (13)0.0439 (14)0.0343 (12)0.0067 (11)−0.0098 (10)−0.0255 (11)
N40.0366 (14)0.0353 (13)0.0397 (13)0.0043 (11)−0.0072 (11)−0.0193 (11)
C10.0395 (17)0.0459 (18)0.0524 (19)−0.0009 (15)−0.0061 (14)−0.0205 (15)
C20.0411 (19)0.0442 (19)0.071 (2)−0.0029 (16)−0.0040 (17)−0.0116 (17)
C30.0428 (19)0.059 (2)0.053 (2)0.0043 (17)0.0019 (16)−0.0007 (17)
C40.0449 (19)0.065 (2)0.0345 (16)0.0085 (17)−0.0017 (14)−0.0136 (16)
C50.0278 (15)0.0488 (18)0.0330 (14)0.0087 (13)−0.0025 (11)−0.0149 (13)
C60.0273 (15)0.0522 (18)0.0340 (15)0.0081 (13)−0.0058 (11)−0.0233 (13)
C70.0391 (18)0.080 (3)0.0383 (17)0.0101 (18)−0.0097 (14)−0.0334 (17)
C80.046 (2)0.084 (3)0.060 (2)0.0086 (19)−0.0143 (17)−0.054 (2)
C90.0449 (19)0.060 (2)0.069 (2)0.0026 (17)−0.0116 (17)−0.0462 (19)
C100.0298 (15)0.0463 (18)0.0511 (18)0.0047 (13)−0.0087 (13)−0.0334 (15)
C110.0284 (15)0.0378 (16)0.0547 (19)0.0052 (12)−0.0076 (13)−0.0262 (14)
C120.047 (2)0.0402 (18)0.075 (3)0.0030 (16)−0.0072 (18)−0.0330 (18)
C130.050 (2)0.0347 (18)0.080 (3)0.0070 (16)−0.0016 (19)−0.0162 (18)
C140.045 (2)0.050 (2)0.054 (2)0.0114 (17)−0.0087 (16)−0.0086 (16)
C150.0404 (17)0.0430 (18)0.0440 (17)0.0064 (14)−0.0092 (14)−0.0145 (14)
O10.0289 (11)0.0497 (13)0.0371 (11)0.0008 (9)−0.0093 (8)−0.0286 (10)
O20.0328 (11)0.0611 (14)0.0450 (12)0.0029 (10)−0.0050 (9)−0.0364 (11)
C160.0299 (14)0.0288 (13)0.0329 (14)0.0023 (11)−0.0079 (11)−0.0165 (11)
C170.0298 (15)0.0524 (19)0.0490 (17)0.0093 (14)−0.0127 (13)−0.0368 (15)
N10.063 (2)0.059 (2)0.0496 (17)0.0021 (17)0.0010 (16)−0.0169 (15)
O30.120 (4)0.167 (5)0.118 (3)−0.050 (3)−0.041 (3)−0.054 (3)
O40.083 (3)0.089 (3)0.100 (3)0.016 (2)−0.025 (2)−0.020 (2)
O50.164 (5)0.074 (3)0.105 (3)−0.018 (3)−0.020 (3)0.005 (2)
O2W0.0656 (17)0.0518 (15)0.0742 (18)0.0006 (13)−0.0035 (14)−0.0290 (14)
Cu1—O11.917 (2)C8—C91.391 (6)
Cu1—N31.937 (3)C8—H80.9300
Cu1—N42.038 (3)C9—C101.394 (5)
Cu1—N22.049 (3)C9—H90.9300
Cu1—O1W2.260 (2)C10—C111.483 (5)
O1W—H1WA0.8501C11—C121.385 (5)
O1W—H1WB0.8501C12—C131.394 (6)
N2—C51.348 (4)C12—H120.9300
N2—C11.349 (5)C13—C141.372 (6)
N3—C101.345 (4)C13—H130.9300
N3—C61.351 (4)C14—C151.370 (5)
N4—C151.351 (4)C14—H140.9300
N4—C111.354 (4)C15—H150.9300
C1—C21.387 (5)O1—C161.285 (4)
C1—H10.9300O2—C161.230 (3)
C2—C31.376 (6)C16—C171.510 (4)
C2—H20.9300C17—C17i1.503 (6)
C3—C41.386 (6)C17—H17A0.9700
C3—H30.9300C17—H17B0.9700
C4—C51.389 (5)N1—O31.204 (6)
C4—H40.9300N1—O51.217 (5)
C5—C61.487 (5)N1—O41.231 (5)
C6—C71.383 (5)O2W—H2WA0.8499
C7—C81.390 (6)O2W—H2WB0.8500
C7—H70.9300
O1—Cu1—N3173.78 (9)C6—C7—H7120.6
O1—Cu1—N498.53 (10)C8—C7—H7120.6
N3—Cu1—N480.04 (11)C7—C8—C9121.1 (3)
O1—Cu1—N2100.55 (11)C7—C8—H8119.5
N3—Cu1—N279.94 (12)C9—C8—H8119.5
N4—Cu1—N2158.56 (11)C8—C9—C10117.8 (4)
O1—Cu1—O1W86.91 (9)C8—C9—H9121.1
N3—Cu1—O1W99.30 (10)C10—C9—H9121.1
N4—Cu1—O1W100.14 (10)N3—C10—C9120.2 (3)
N2—Cu1—O1W90.58 (10)N3—C10—C11112.8 (3)
Cu1—O1W—H1WA138.1C9—C10—C11127.0 (3)
Cu1—O1W—H1WB111.0N4—C11—C12121.6 (3)
H1WA—O1W—H1WB107.7N4—C11—C10114.1 (3)
C5—N2—C1118.7 (3)C12—C11—C10124.3 (3)
C5—N2—Cu1114.3 (2)C11—C12—C13118.9 (3)
C1—N2—Cu1127.0 (2)C11—C12—H12120.6
C10—N3—C6122.5 (3)C13—C12—H12120.6
C10—N3—Cu1118.7 (2)C14—C13—C12119.2 (3)
C6—N3—Cu1118.8 (2)C14—C13—H13120.4
C15—N4—C11118.5 (3)C12—C13—H13120.4
C15—N4—Cu1127.4 (2)C15—C14—C13119.3 (4)
C11—N4—Cu1114.1 (2)C15—C14—H14120.3
N2—C1—C2122.0 (3)C13—C14—H14120.3
N2—C1—H1119.0N4—C15—C14122.4 (3)
C2—C1—H1119.0N4—C15—H15118.8
C3—C2—C1119.0 (4)C14—C15—H15118.8
C3—C2—H2120.5C16—O1—Cu1115.18 (17)
C1—C2—H2120.5O2—C16—O1123.0 (3)
C2—C3—C4119.5 (3)O2—C16—C17121.3 (3)
C2—C3—H3120.2O1—C16—C17115.7 (2)
C4—C3—H3120.2C17i—C17—C16114.3 (3)
C3—C4—C5118.7 (4)C17i—C17—H17A108.7
C3—C4—H4120.6C16—C17—H17A108.7
C5—C4—H4120.6C17i—C17—H17B108.7
N2—C5—C4122.0 (3)C16—C17—H17B108.7
N2—C5—C6114.2 (3)H17A—C17—H17B107.6
C4—C5—C6123.8 (3)O3—N1—O5116.3 (5)
N3—C6—C7119.7 (3)O3—N1—O4123.9 (5)
N3—C6—C5112.7 (3)O5—N1—O4118.6 (5)
C7—C6—C5127.6 (3)H2WA—O2W—H2WB107.7
C6—C7—C8118.7 (3)
O1—Cu1—N2—C5−174.99 (19)N2—C5—C6—N31.1 (4)
N3—Cu1—N2—C5−1.29 (19)C4—C5—C6—N3−178.3 (3)
N4—Cu1—N2—C5−22.4 (4)N2—C5—C6—C7180.0 (3)
O1W—Cu1—N2—C598.0 (2)C4—C5—C6—C70.6 (5)
O1—Cu1—N2—C15.0 (3)N3—C6—C7—C81.0 (5)
N3—Cu1—N2—C1178.7 (3)C5—C6—C7—C8−177.8 (3)
N4—Cu1—N2—C1157.6 (3)C6—C7—C8—C90.0 (5)
O1W—Cu1—N2—C1−81.9 (3)C7—C8—C9—C100.3 (5)
N4—Cu1—N3—C10−4.6 (2)C6—N3—C10—C92.7 (5)
N2—Cu1—N3—C10−176.9 (2)Cu1—N3—C10—C9−178.4 (2)
O1W—Cu1—N3—C1094.1 (2)C6—N3—C10—C11−175.6 (2)
N4—Cu1—N3—C6174.3 (2)Cu1—N3—C10—C113.3 (3)
N2—Cu1—N3—C62.0 (2)C8—C9—C10—N3−1.6 (5)
O1W—Cu1—N3—C6−86.9 (2)C8—C9—C10—C11176.4 (3)
O1—Cu1—N4—C15−3.3 (3)C15—N4—C11—C12−1.7 (5)
N3—Cu1—N4—C15−177.1 (3)Cu1—N4—C11—C12176.3 (2)
N2—Cu1—N4—C15−156.0 (3)C15—N4—C11—C10177.2 (3)
O1W—Cu1—N4—C1585.1 (3)Cu1—N4—C11—C10−4.8 (3)
O1—Cu1—N4—C11178.9 (2)N3—C10—C11—N41.2 (4)
N3—Cu1—N4—C115.1 (2)C9—C10—C11—N4−177.0 (3)
N2—Cu1—N4—C1126.2 (4)N3—C10—C11—C12−179.9 (3)
O1W—Cu1—N4—C11−92.7 (2)C9—C10—C11—C122.0 (5)
C5—N2—C1—C2−0.2 (5)N4—C11—C12—C131.4 (5)
Cu1—N2—C1—C2179.8 (2)C10—C11—C12—C13−177.4 (3)
N2—C1—C2—C30.6 (5)C11—C12—C13—C140.3 (5)
C1—C2—C3—C4−0.6 (5)C12—C13—C14—C15−1.7 (6)
C2—C3—C4—C50.2 (5)C11—N4—C15—C140.3 (5)
C1—N2—C5—C4−0.1 (4)Cu1—N4—C15—C14−177.4 (3)
Cu1—N2—C5—C4179.9 (2)C13—C14—C15—N41.5 (5)
C1—N2—C5—C6−179.5 (3)N4—Cu1—O1—C16−90.9 (2)
Cu1—N2—C5—C60.5 (3)N2—Cu1—O1—C1679.3 (2)
C3—C4—C5—N20.1 (5)O1W—Cu1—O1—C16169.3 (2)
C3—C4—C5—C6179.5 (3)Cu1—O1—C16—O21.2 (4)
C10—N3—C6—C7−2.4 (4)Cu1—O1—C16—C17179.5 (2)
Cu1—N3—C6—C7178.7 (2)O2—C16—C17—C17i−145.5 (4)
C10—N3—C6—C5176.6 (2)O1—C16—C17—C17i36.1 (5)
Cu1—N3—C6—C5−2.3 (3)
D—H···AD—HH···AD···AD—H···A
O2W—H2WB···O1ii0.852.333.101 (4)150
O2W—H2WA···O3iii0.852.323.138 (7)162
O1W—H1WB···O2W0.851.982.831 (4)174
O1W—H1WA···O2iv0.851.922.755 (3)167
Table 1

Selected bond lengths (Å)

Cu1—O11.917 (2)
Cu1—N31.937 (3)
Cu1—N42.038 (3)
Cu1—N22.049 (3)
Cu1—O1W2.260 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2W—H2WB⋯O1i0.852.333.101 (4)150
O2W—H2WA⋯O3ii0.852.323.138 (7)162
O1W—H1WB⋯O2W0.851.982.831 (4)174
O1W—H1WA⋯O2iii0.851.922.755 (3)167

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bis(mu-benzene-1,2-dicarboxylato)bis{aqua[2-(2-chloro-6-fluorophenyl)-1H-imidazo[4,5-f][1,10]phenanthroline]cadmium(II)} and its zinc(II) analogue.

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Journal:  Acta Crystallogr C       Date:  2009-11-07       Impact factor: 1.172

3.  catena-Poly[[diaqua-dipyridine-zinc(II)]-μ-succinato].

Authors:  Tanwawan Duangthongyou; Sutatip Siripaisarnpipat
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-14

4.  Aqua-(2,2'-bipyrimidine-κN,N')(succin-ato-κO,O)copper(II) dihydrate.

Authors:  Xi-Jun Ke; Dong-Sheng Li; Jun Zhao; Qiu-Fen He; Cai Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-18

5.  Poly[μ(4)-succinato-μ(2)-succinato-bis[diamminecopper(II)]].

Authors:  Shouwen Jin; Daqi Wang; Yan-Lin Yu; Guan-Min Luo; Yan-Yan Ye
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-06

6.  Poly[diaqua-(μ(3)-succinato)cadmium(II)].

Authors:  Xuan-Wen Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-25

7.  Poly[diaqua-μ(2)-oxalato-di-μ(4)-succinato-diyttrium(III)].

Authors:  Zhi-Feng Li; Chun-Xiang Wang; Ping Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-19
  7 in total

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