Literature DB >> 21577446

Poly[diaqua-μ(2)-oxalato-di-μ(4)-succinato-diyttrium(III)].

Zhi-Feng Li1, Chun-Xiang Wang, Ping Wang.   

Abstract

In the title compound, [Y(2)(C(4)H(4)O(4))(2)(C(2)O(4))(H(2)O)(2)](n), the flexible succinate anion assumes a gauche conformation and bridges the eight-coordinated Y atoms, generating two-dimensional layers parallel to (010). The coordination polymer layers are linked into a three-dimensional framework by the rigid oxalate ligands. The oxalate ions are located on a center of inversion. Inter-molecular O-H⋯O hydrogen bonds help to stabilize the crystal structure.

Entities:  

Year:  2009        PMID: 21577446      PMCID: PMC2969986          DOI: 10.1107/S1600536809032085

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is isostructural with [Nd2(C4H4O4)2(C2O4)(H2O)], see: Wang et al. (2007 ▶). For bond lengths and angles in succinate anions, see: Seguatni et al. (2004 ▶).

Experimental

Crystal data

[Y2(C4H4O4)2(C2O4)(H2O)2] M = 534.02 Triclinic, a = 6.610 (2) Å b = 7.689 (3) Å c = 8.018 (3) Å α = 101.589 (5)° β = 101.843 (4)° γ = 101.492 (5)° V = 378.2 (2) Å3 Z = 1 Mo Kα radiation μ = 7.71 mm−1 T = 295 K 0.21 × 0.18 × 0.09 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.215, T max = 0.505 2108 measured reflections 1482 independent reflections 1376 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.059 S = 1.08 1482 reflections 119 parameters H-atom parameters constrained Δρmax = 0.60 e Å−3 Δρmin = −0.54 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809032085/jj2005sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032085/jj2005Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Y2(C4H4O4)2(C2O4)(H2O)2]Z = 1
Mr = 534.02F(000) = 262
Triclinic, P1Dx = 2.345 Mg m3
Hall symbol: -p 1Mo Kα radiation, λ = 0.71073 Å
a = 6.610 (2) ÅCell parameters from 336 reflections
b = 7.689 (3) Åθ = 2.1–27.8°
c = 8.018 (3) ŵ = 7.71 mm1
α = 101.589 (5)°T = 295 K
β = 101.843 (4)°Plate, colorless
γ = 101.492 (5)°0.21 × 0.18 × 0.09 mm
V = 378.2 (2) Å3
Bruker APEXII CCD area-detector diffractometer1482 independent reflections
Radiation source: fine-focus sealed tube1376 reflections with I > 2σ(I)
graphiteRint = 0.016
φ and ω scansθmax = 26.2°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −8→7
Tmin = 0.215, Tmax = 0.505k = −6→9
2108 measured reflectionsl = −9→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.022H-atom parameters constrained
wR(F2) = 0.059w = 1/[σ2(Fo2) + (0.0373P)2] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.001
1482 reflectionsΔρmax = 0.60 e Å3
119 parametersΔρmin = −0.54 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.017 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Y0.53610 (4)0.62226 (3)0.80635 (3)0.01351 (12)
C10.1559 (4)0.3484 (3)0.7710 (3)0.0152 (5)
C2−0.0273 (4)0.1915 (4)0.7540 (4)0.0252 (6)
H2A−0.08780.22000.85360.030*
H2B0.02710.08440.76160.030*
C3−0.2057 (4)0.1422 (4)0.5858 (4)0.0216 (6)
H3B−0.14240.14250.48680.026*
H3A−0.29000.01860.56970.026*
C4−0.3519 (4)0.2691 (4)0.5834 (3)0.0181 (6)
C50.3783 (4)0.9630 (4)0.9836 (3)0.0161 (5)
O10.2979 (3)0.4094 (2)0.9192 (2)0.0192 (4)
O20.1803 (3)0.4203 (3)0.6480 (2)0.0213 (4)
O3−0.3798 (4)0.3458 (3)0.7273 (3)0.0332 (5)
O4−0.4457 (3)0.2882 (3)0.4388 (3)0.0330 (5)
O50.3011 (3)0.7981 (2)0.8991 (3)0.0214 (4)
O60.2800 (3)1.0725 (2)1.0435 (3)0.0210 (4)
O70.8645 (3)0.6937 (3)0.7236 (3)0.0280 (5)
H7A0.84270.65640.61270.042*
H7B0.99490.73070.78110.042*
U11U22U33U12U13U23
Y0.01401 (16)0.01412 (16)0.01224 (16)0.00374 (10)0.00208 (9)0.00406 (10)
C10.0149 (12)0.0151 (13)0.0164 (12)0.0070 (10)0.0039 (10)0.0029 (10)
C20.0170 (13)0.0255 (16)0.0329 (15)0.0021 (11)0.0000 (12)0.0171 (12)
C30.0149 (13)0.0161 (14)0.0275 (15)0.0002 (10)0.0005 (11)−0.0001 (11)
C40.0177 (13)0.0132 (13)0.0199 (13)−0.0011 (10)0.0002 (10)0.0059 (10)
C50.0145 (13)0.0172 (13)0.0169 (12)0.0033 (10)0.0024 (10)0.0071 (10)
O10.0187 (9)0.0201 (10)0.0139 (9)−0.0003 (8)−0.0016 (7)0.0044 (7)
O20.0216 (10)0.0232 (10)0.0162 (9)−0.0001 (8)0.0013 (7)0.0076 (8)
O30.0434 (13)0.0273 (12)0.0304 (11)0.0170 (10)0.0105 (10)0.0013 (9)
O40.0275 (11)0.0441 (14)0.0311 (11)0.0075 (10)0.0012 (9)0.0253 (10)
O50.0160 (9)0.0153 (10)0.0290 (10)0.0017 (7)0.0049 (8)−0.0004 (8)
O60.0164 (9)0.0165 (10)0.0301 (10)0.0051 (8)0.0074 (8)0.0036 (8)
O70.0167 (9)0.0412 (13)0.0207 (10)0.0033 (9)0.0032 (8)0.0012 (9)
Y—O12.4755 (18)C2—H2A0.9700
Y—O1i2.3319 (19)C2—H2B0.9700
Y—O22.4658 (19)C3—C41.504 (4)
Y—O3ii2.303 (2)C3—H3B0.9700
Y—O4iii2.218 (2)C3—H3A0.9700
Y—O52.3876 (19)C4—O41.249 (3)
Y—O6iv2.3583 (19)C4—O31.253 (3)
Y—O72.391 (2)C5—O61.243 (3)
Y—Yi4.0005 (11)C5—O51.258 (3)
C1—O21.246 (3)C5—C5iv1.544 (5)
C1—O11.287 (3)O7—H7A0.8495
C1—C21.491 (4)O7—H7B0.8503
C2—C31.522 (4)
O4iii—Y—O3ii106.90 (8)O5—Y—Yi86.67 (5)
O4iii—Y—O1i165.91 (7)O7—Y—Yi123.69 (5)
O3ii—Y—O1i78.99 (7)O2—Y—Yi84.57 (5)
O4iii—Y—O6iv89.63 (8)O1—Y—Yi32.56 (4)
O3ii—Y—O6iv137.24 (8)C1—Y—Yi58.88 (5)
O1i—Y—O6iv77.83 (7)O2—C1—O1118.6 (2)
O4iii—Y—O582.76 (8)O2—C1—C2123.3 (2)
O3ii—Y—O5151.09 (8)O1—C1—C2118.1 (2)
O1i—Y—O598.21 (7)O2—C1—Y59.11 (13)
O6iv—Y—O568.11 (6)O1—C1—Y59.69 (12)
O4iii—Y—O776.30 (8)C2—C1—Y173.79 (19)
O3ii—Y—O774.60 (8)C1—C2—C3115.8 (2)
O1i—Y—O793.43 (7)C1—C2—H2A108.3
O6iv—Y—O771.50 (7)C3—C2—H2A108.3
O5—Y—O7134.23 (7)C1—C2—H2B108.3
O4iii—Y—O274.88 (7)C3—C2—H2B108.3
O3ii—Y—O279.10 (7)H2A—C2—H2B107.4
O1i—Y—O2119.12 (6)C4—C3—C2114.3 (2)
O6iv—Y—O2143.65 (7)C4—C3—H3B108.7
O5—Y—O277.31 (7)C2—C3—H3B108.7
O7—Y—O2132.82 (7)C4—C3—H3A108.7
O4iii—Y—O1126.14 (7)C2—C3—H3A108.7
O3ii—Y—O175.63 (8)H3B—C3—H3A107.6
O1i—Y—O167.40 (7)O4—C4—O3123.0 (3)
O6iv—Y—O1125.61 (6)O4—C4—C3118.9 (3)
O5—Y—O176.79 (7)O3—C4—C3118.0 (2)
O7—Y—O1147.15 (7)O6—C5—O5127.1 (2)
O2—Y—O152.31 (6)O6—C5—C5iv116.6 (3)
O4iii—Y—C1100.33 (8)O5—C5—C5iv116.3 (3)
O3ii—Y—C174.65 (8)C1—O1—Yi151.33 (16)
O1i—Y—C193.56 (7)C1—O1—Y93.65 (15)
O6iv—Y—C1141.99 (7)Yi—O1—Y112.60 (7)
O5—Y—C176.83 (7)C1—O2—Y95.19 (15)
O7—Y—C1146.47 (7)C4—O3—Yv129.0 (2)
O2—Y—C125.70 (7)C4—O4—Yiii165.24 (19)
O1—Y—C126.66 (7)C5—O5—Y118.76 (16)
O4iii—Y—Yi158.49 (6)C5—O6—Yiv120.22 (16)
O3ii—Y—Yi74.64 (6)Y—O7—H7A110.0
O1i—Y—Yi34.84 (4)Y—O7—H7B133.6
O6iv—Y—Yi103.73 (5)H7A—O7—H7B115.4
D—H···AD—HH···AD···AD—H···A
O7—H7A···O2vi0.852.022.867 (5)175
O7—H7B···O5ii0.851.962.812 (4)175
Table 1

Selected bond lengths (Å)

Y—O12.4755 (18)
Y—O1i2.3319 (19)
Y—O22.4658 (19)
Y—O3ii2.303 (2)
Y—O4iii2.218 (2)
Y—O52.3876 (19)
Y—O6iv2.3583 (19)
Y—O72.391 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O7—H7A⋯O2v0.852.022.867 (5)175
O7—H7B⋯O5ii0.851.962.812 (4)175

Symmetry codes: (ii) ; (v) .

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Authors:  George M Sheldrick
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