Literature DB >> 21579840

N-Carbethoxy-N'-(3-phenyl-1H-1,2,4-triazol-5-yl)thiourea.

Anton V Dolzhenko, Geok Kheng Tan, Lip Lin Koh, Anna V Dolzhenko, Wai Keung Chui.   

Abstract

The title compound {systematic name: ethyl N-[N-(3-phenyl-1H-1,2,4-triazol-5-yl)carbamothio-yl]carbamate}, C(12)H(13)N(5)O(2)S, exists in the 3-phenyl-5-thio-ureido-1H-1,2,4-triazole tautomeric form stabilized by intra-molecular hydrogen bonding between the endocyclic NH H atom and the thio-ureido S atom. The mol-ecular structure is also stabilized by intra-molecular N-H⋯O=C hydrogen bonds arranged in an S(6) graph-set motif within the carbethoxy-thio-urea moiety. The mean planes of the phenyl and 1,2,4-triazole rings make a dihedral angle of 7.61 (11)°. In the crystal, the mol-ecules form two types of inversion dimers. Inter-molecular hydrogen bonds are arranged in R(2) (2)(6) and R(2) (2)(8) graph-set motifs, together forming a network parallel to (111).

Entities:  

Year:  2010        PMID: 21579840      PMCID: PMC2979925          DOI: 10.1107/S1600536810002369

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, tautomerism and crystal structure studies of related 1,2,4-triazoles, see: Dolzhenko et al. (2007 ▶, 2009 ▶). For the structures of related carbethoxy­thio­ureas, see: Huang et al. (2009 ▶); Lin et al. (2004 ▶, 2007 ▶); Su et al. (2006 ▶); Zhang et al. (2003 ▶, 2007 ▶). For the graph-set analysis of hydrogen bonding, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C12H13N5O2S M = 291.33 Triclinic, a = 5.9929 (3) Å b = 9.4200 (5) Å c = 12.2000 (7) Å α = 91.818 (1)° β = 92.585 (1)° γ = 101.083 (1)° V = 674.62 (6) Å3 Z = 2 Mo Kα radiation μ = 0.25 mm−1 T = 100 K 0.56 × 0.24 × 0.12 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.873, T max = 0.971 8943 measured reflections 3092 independent reflections 2828 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.102 S = 1.06 3092 reflections 194 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.59 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810002369/gw2076sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810002369/gw2076Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H13N5O2SZ = 2
Mr = 291.33F(000) = 304
Triclinic, P1Dx = 1.434 Mg m3
Hall symbol: -P 1Melting point: 454 K
a = 5.9929 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.4200 (5) ÅCell parameters from 4121 reflections
c = 12.2000 (7) Åθ = 2.7–27.5°
α = 91.818 (1)°µ = 0.25 mm1
β = 92.585 (1)°T = 100 K
γ = 101.083 (1)°Rod, colourless
V = 674.62 (6) Å30.56 × 0.24 × 0.12 mm
Bruker SMART APEX CCD diffractometer3092 independent reflections
Radiation source: fine-focus sealed tube2828 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 27.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −7→7
Tmin = 0.873, Tmax = 0.971k = −12→12
8943 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0557P)2 + 0.2404P] where P = (Fo2 + 2Fc2)/3
3092 reflections(Δ/σ)max = 0.001
194 parametersΔρmax = 0.59 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.26167 (6)0.64734 (4)−0.02591 (3)0.02072 (12)
O10.58945 (18)0.44334 (11)0.28112 (8)0.0204 (2)
O20.31338 (18)0.55681 (11)0.33852 (8)0.0217 (2)
N1−0.1894 (2)0.78466 (13)0.22558 (10)0.0180 (3)
N2−0.1881 (2)0.93860 (13)0.08657 (10)0.0196 (3)
N3−0.0355 (2)0.84999 (13)0.07092 (10)0.0190 (3)
H3N0.052 (3)0.866 (2)0.0191 (17)0.033 (5)*
N40.1037 (2)0.66518 (13)0.17503 (10)0.0179 (3)
H4N0.111 (3)0.643 (2)0.2411 (17)0.028 (5)*
N50.3803 (2)0.52952 (13)0.15529 (10)0.0187 (3)
H5N0.458 (3)0.494 (2)0.1140 (15)0.020 (4)*
C1−0.5206 (3)0.91936 (16)0.33573 (12)0.0208 (3)
H1−0.45080.85190.37420.025*
C2−0.6883 (3)0.97955 (17)0.38396 (13)0.0246 (3)
H2−0.73340.95280.45530.030*
C3−0.7902 (3)1.07873 (17)0.32819 (14)0.0254 (3)
H3−0.90471.11990.36140.030*
C4−0.7245 (3)1.11747 (16)0.22403 (13)0.0237 (3)
H4−0.79361.18570.18610.028*
C5−0.5586 (3)1.05716 (16)0.17507 (12)0.0204 (3)
H5−0.51541.08330.10340.024*
C6−0.4547 (2)0.95789 (15)0.23090 (12)0.0175 (3)
C7−0.2773 (2)0.89424 (15)0.17999 (12)0.0172 (3)
C8−0.0381 (2)0.76241 (15)0.15491 (11)0.0173 (3)
C90.2436 (2)0.61501 (15)0.10695 (11)0.0170 (3)
C100.4197 (2)0.51397 (15)0.26620 (12)0.0181 (3)
C110.6496 (3)0.42025 (17)0.39532 (12)0.0246 (3)
H11A0.51230.37630.43340.030*
H11B0.71870.51340.43390.030*
C120.8169 (3)0.32036 (17)0.39450 (14)0.0250 (3)
H12A0.74550.22810.35720.037*
H12B0.86360.30330.47020.037*
H12C0.95080.36450.35560.037*
U11U22U33U12U13U23
S10.0269 (2)0.0220 (2)0.01582 (19)0.01013 (15)0.00368 (14)0.00310 (13)
O10.0255 (5)0.0203 (5)0.0183 (5)0.0113 (4)0.0017 (4)0.0021 (4)
O20.0270 (6)0.0238 (5)0.0175 (5)0.0120 (4)0.0040 (4)0.0029 (4)
N10.0203 (6)0.0153 (6)0.0188 (6)0.0047 (5)0.0010 (5)0.0011 (5)
N20.0205 (6)0.0206 (6)0.0194 (6)0.0083 (5)0.0000 (5)0.0019 (5)
N30.0212 (6)0.0206 (6)0.0174 (6)0.0088 (5)0.0035 (5)0.0041 (5)
N40.0225 (6)0.0187 (6)0.0141 (6)0.0078 (5)0.0020 (5)0.0025 (5)
N50.0220 (6)0.0190 (6)0.0174 (6)0.0093 (5)0.0039 (5)0.0006 (5)
C10.0230 (7)0.0193 (7)0.0214 (7)0.0074 (6)−0.0003 (6)0.0013 (5)
C20.0262 (8)0.0251 (8)0.0235 (8)0.0068 (6)0.0054 (6)0.0001 (6)
C30.0224 (7)0.0236 (8)0.0317 (8)0.0089 (6)0.0014 (6)−0.0037 (6)
C40.0220 (7)0.0191 (7)0.0313 (8)0.0081 (6)−0.0035 (6)0.0004 (6)
C50.0214 (7)0.0183 (7)0.0211 (7)0.0032 (5)−0.0020 (5)0.0024 (5)
C60.0168 (6)0.0155 (7)0.0201 (7)0.0034 (5)−0.0012 (5)−0.0016 (5)
C70.0172 (7)0.0159 (6)0.0185 (7)0.0039 (5)−0.0032 (5)0.0002 (5)
C80.0194 (7)0.0153 (6)0.0171 (7)0.0036 (5)0.0000 (5)−0.0004 (5)
C90.0186 (7)0.0136 (6)0.0184 (7)0.0026 (5)0.0005 (5)0.0005 (5)
C100.0213 (7)0.0135 (6)0.0199 (7)0.0042 (5)0.0015 (5)0.0023 (5)
C110.0318 (8)0.0256 (8)0.0194 (7)0.0135 (6)−0.0016 (6)0.0021 (6)
C120.0249 (8)0.0235 (8)0.0285 (8)0.0094 (6)−0.0008 (6)0.0042 (6)
S1—C91.6632 (14)C1—C61.394 (2)
O1—C101.3274 (17)C1—H10.9500
O1—C111.4568 (17)C2—C31.390 (2)
O2—C101.2142 (18)C2—H20.9500
N1—C81.3194 (18)C3—C41.386 (2)
N1—C71.3680 (18)C3—H30.9500
N2—C71.3260 (19)C4—C51.385 (2)
N2—N31.3674 (17)C4—H40.9500
N3—C81.3345 (18)C5—C61.397 (2)
N3—H3N0.84 (2)C5—H50.9500
N4—C91.3440 (18)C6—C71.4685 (19)
N4—C81.3845 (18)C11—C121.501 (2)
N4—H4N0.84 (2)C11—H11A0.9900
N5—C101.3803 (18)C11—H11B0.9900
N5—C91.3811 (18)C12—H12A0.9800
N5—H5N0.81 (2)C12—H12B0.9800
C1—C21.389 (2)C12—H12C0.9800
C10—O1—C11115.00 (11)C1—C6—C5119.48 (13)
C8—N1—C7102.43 (12)C1—C6—C7120.00 (13)
C7—N2—N3102.54 (11)C5—C6—C7120.52 (13)
C8—N3—N2109.22 (12)N2—C7—N1114.46 (13)
C8—N3—H3N131.7 (14)N2—C7—C6122.90 (13)
N2—N3—H3N118.4 (14)N1—C7—C6122.64 (13)
C9—N4—C8128.91 (13)N1—C8—N3111.32 (12)
C9—N4—H4N117.6 (13)N1—C8—N4121.13 (13)
C8—N4—H4N113.1 (13)N3—C8—N4127.42 (13)
C10—N5—C9127.10 (13)N4—C9—N5114.77 (12)
C10—N5—H5N116.8 (13)N4—C9—S1125.65 (11)
C9—N5—H5N115.5 (13)N5—C9—S1119.58 (11)
C2—C1—C6120.04 (14)O2—C10—O1125.48 (13)
C2—C1—H1120.0O2—C10—N5125.13 (13)
C6—C1—H1120.0O1—C10—N5109.38 (12)
C1—C2—C3120.18 (14)O1—C11—C12106.95 (12)
C1—C2—H2119.9O1—C11—H11A110.3
C3—C2—H2119.9C12—C11—H11A110.3
C4—C3—C2119.88 (14)O1—C11—H11B110.3
C4—C3—H3120.1C12—C11—H11B110.3
C2—C3—H3120.1H11A—C11—H11B108.6
C5—C4—C3120.28 (14)C11—C12—H12A109.5
C5—C4—H4119.9C11—C12—H12B109.5
C3—C4—H4119.9H12A—C12—H12B109.5
C4—C5—C6120.13 (14)C11—C12—H12C109.5
C4—C5—H5119.9H12A—C12—H12C109.5
C6—C5—H5119.9H12B—C12—H12C109.5
D—H···AD—HH···AD···AD—H···A
N5—H5N···S1i0.81 (2)2.58 (2)3.3739 (13)166.0 (17)
N4—H4N···O20.84 (2)1.97 (2)2.6448 (16)137.3 (18)
N3—H3N···S10.84 (2)2.67 (2)3.0926 (13)113.0 (16)
N3—H3N···N2ii0.84 (2)2.32 (2)2.9838 (18)136.5 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H5N⋯S1i0.81 (2)2.58 (2)3.3739 (13)166.0 (17)
N4—H4N⋯O20.84 (2)1.97 (2)2.6448 (16)137.3 (18)
N3—H3N⋯S10.84 (2)2.67 (2)3.0926 (13)113.0 (16)
N3—H3N⋯N2ii0.84 (2)2.32 (2)2.9838 (18)136.5 (18)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Amino-4-(4-bromo-phen-yl)-8-trifluoro-methyl-3,4-dihydropyrimido[1,2-a][1,3,5]triazin-6(5H)-one.

Authors:  Anton V Dolzhenko; Nikhil Sachdeva; Geok Kheng Tan; Lip Lin Koh; Wai Keung Chui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-06

3.  Methyl 3-[3-(ethoxy-carbon-yl)thio-ureido]-1H-pyrazole-5-carboxyl-ate.

Authors:  Buwen Huang; Pei-Pei Kung; Arnold L Rheingold; Antonio Dipasquale; Alex Yanovsky
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-14
  3 in total
  4 in total

1.  N-Carbethoxy-N'-[3-(4-methylphenyl)-1H-1,2,4-triazol-5-yl]thiourea.

Authors:  Anton V Dolzhenko; Geok Kheng Tan; Lip Lin Koh; Anna V Dolzhenko; Wai Keung Chui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-06

2.  4-Carbethoxy-1-[4-(N,N-dimethylamino)benzoyl]thiosemicarbazide.

Authors:  Hriday Bera; Anton V Dolzhenko; Geok Kheng Tan; Lip Lin Koh; Wai Keung Chui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-30

3.  3-Ethyl-4-[3-(1H-imidazol-1-yl)prop-yl]-5-phenyl-4H-1,2,4-triazole dihydrate.

Authors:  Anuradha Gurumoorthy; Vasuki Gopalsamy; Dilek Unlüer; Esra Düğdü; Babu Varghesee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-09

4.  A monoclinic polymorph of N-eth-oxy-carbonyl-N'-(3-phenyl-1H-1,2,4-triazol-5-yl)thio-urea.

Authors:  Anton V Dolzhenko; Geok Kheng Tan; Anna V Dolzhenko; Lip Lin Koh; Wai Keung Chui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-10
  4 in total

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