| Literature DB >> 21579840 |
Anton V Dolzhenko, Geok Kheng Tan, Lip Lin Koh, Anna V Dolzhenko, Wai Keung Chui.
Abstract
The title compound {systematic name: ethyl N-[N-(3-phenyl-1H-1,2,4-triazol-5-yl)carbamothio-yl]carbamate}, C(12)H(13)N(5)O(2)S, exists in the 3-phenyl-5-thio-ureido-1H-1,2,4-triazole tautomeric form stabilized by intra-molecular hydrogen bonding between the endocyclic NH H atom and the thio-ureido S atom. The mol-ecular structure is also stabilized by intra-molecular N-H⋯O=C hydrogen bonds arranged in an S(6) graph-set motif within the carbethoxy-thio-urea moiety. The mean planes of the phenyl and 1,2,4-triazole rings make a dihedral angle of 7.61 (11)°. In the crystal, the mol-ecules form two types of inversion dimers. Inter-molecular hydrogen bonds are arranged in R(2) (2)(6) and R(2) (2)(8) graph-set motifs, together forming a network parallel to (111).Entities:
Year: 2010 PMID: 21579840 PMCID: PMC2979925 DOI: 10.1107/S1600536810002369
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H13N5O2S | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 454 K |
| Mo | |
| Cell parameters from 4121 reflections | |
| θ = 2.7–27.5° | |
| α = 91.818 (1)° | µ = 0.25 mm−1 |
| β = 92.585 (1)° | |
| γ = 101.083 (1)° | Rod, colourless |
| 0.56 × 0.24 × 0.12 mm |
| Bruker SMART APEX CCD diffractometer | 3092 independent reflections |
| Radiation source: fine-focus sealed tube | 2828 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 8943 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3092 reflections | (Δ/σ)max = 0.001 |
| 194 parameters | Δρmax = 0.59 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.26167 (6) | 0.64734 (4) | −0.02591 (3) | 0.02072 (12) | |
| O1 | 0.58945 (18) | 0.44334 (11) | 0.28112 (8) | 0.0204 (2) | |
| O2 | 0.31338 (18) | 0.55681 (11) | 0.33852 (8) | 0.0217 (2) | |
| N1 | −0.1894 (2) | 0.78466 (13) | 0.22558 (10) | 0.0180 (3) | |
| N2 | −0.1881 (2) | 0.93860 (13) | 0.08657 (10) | 0.0196 (3) | |
| N3 | −0.0355 (2) | 0.84999 (13) | 0.07092 (10) | 0.0190 (3) | |
| H3N | 0.052 (3) | 0.866 (2) | 0.0191 (17) | 0.033 (5)* | |
| N4 | 0.1037 (2) | 0.66518 (13) | 0.17503 (10) | 0.0179 (3) | |
| H4N | 0.111 (3) | 0.643 (2) | 0.2411 (17) | 0.028 (5)* | |
| N5 | 0.3803 (2) | 0.52952 (13) | 0.15529 (10) | 0.0187 (3) | |
| H5N | 0.458 (3) | 0.494 (2) | 0.1140 (15) | 0.020 (4)* | |
| C1 | −0.5206 (3) | 0.91936 (16) | 0.33573 (12) | 0.0208 (3) | |
| H1 | −0.4508 | 0.8519 | 0.3742 | 0.025* | |
| C2 | −0.6883 (3) | 0.97955 (17) | 0.38396 (13) | 0.0246 (3) | |
| H2 | −0.7334 | 0.9528 | 0.4553 | 0.030* | |
| C3 | −0.7902 (3) | 1.07873 (17) | 0.32819 (14) | 0.0254 (3) | |
| H3 | −0.9047 | 1.1199 | 0.3614 | 0.030* | |
| C4 | −0.7245 (3) | 1.11747 (16) | 0.22403 (13) | 0.0237 (3) | |
| H4 | −0.7936 | 1.1857 | 0.1861 | 0.028* | |
| C5 | −0.5586 (3) | 1.05716 (16) | 0.17507 (12) | 0.0204 (3) | |
| H5 | −0.5154 | 1.0833 | 0.1034 | 0.024* | |
| C6 | −0.4547 (2) | 0.95789 (15) | 0.23090 (12) | 0.0175 (3) | |
| C7 | −0.2773 (2) | 0.89424 (15) | 0.17999 (12) | 0.0172 (3) | |
| C8 | −0.0381 (2) | 0.76241 (15) | 0.15491 (11) | 0.0173 (3) | |
| C9 | 0.2436 (2) | 0.61501 (15) | 0.10695 (11) | 0.0170 (3) | |
| C10 | 0.4197 (2) | 0.51397 (15) | 0.26620 (12) | 0.0181 (3) | |
| C11 | 0.6496 (3) | 0.42025 (17) | 0.39532 (12) | 0.0246 (3) | |
| H11A | 0.5123 | 0.3763 | 0.4334 | 0.030* | |
| H11B | 0.7187 | 0.5134 | 0.4339 | 0.030* | |
| C12 | 0.8169 (3) | 0.32036 (17) | 0.39450 (14) | 0.0250 (3) | |
| H12A | 0.7455 | 0.2281 | 0.3572 | 0.037* | |
| H12B | 0.8636 | 0.3033 | 0.4702 | 0.037* | |
| H12C | 0.9508 | 0.3645 | 0.3556 | 0.037* |
| S1 | 0.0269 (2) | 0.0220 (2) | 0.01582 (19) | 0.01013 (15) | 0.00368 (14) | 0.00310 (13) |
| O1 | 0.0255 (5) | 0.0203 (5) | 0.0183 (5) | 0.0113 (4) | 0.0017 (4) | 0.0021 (4) |
| O2 | 0.0270 (6) | 0.0238 (5) | 0.0175 (5) | 0.0120 (4) | 0.0040 (4) | 0.0029 (4) |
| N1 | 0.0203 (6) | 0.0153 (6) | 0.0188 (6) | 0.0047 (5) | 0.0010 (5) | 0.0011 (5) |
| N2 | 0.0205 (6) | 0.0206 (6) | 0.0194 (6) | 0.0083 (5) | 0.0000 (5) | 0.0019 (5) |
| N3 | 0.0212 (6) | 0.0206 (6) | 0.0174 (6) | 0.0088 (5) | 0.0035 (5) | 0.0041 (5) |
| N4 | 0.0225 (6) | 0.0187 (6) | 0.0141 (6) | 0.0078 (5) | 0.0020 (5) | 0.0025 (5) |
| N5 | 0.0220 (6) | 0.0190 (6) | 0.0174 (6) | 0.0093 (5) | 0.0039 (5) | 0.0006 (5) |
| C1 | 0.0230 (7) | 0.0193 (7) | 0.0214 (7) | 0.0074 (6) | −0.0003 (6) | 0.0013 (5) |
| C2 | 0.0262 (8) | 0.0251 (8) | 0.0235 (8) | 0.0068 (6) | 0.0054 (6) | 0.0001 (6) |
| C3 | 0.0224 (7) | 0.0236 (8) | 0.0317 (8) | 0.0089 (6) | 0.0014 (6) | −0.0037 (6) |
| C4 | 0.0220 (7) | 0.0191 (7) | 0.0313 (8) | 0.0081 (6) | −0.0035 (6) | 0.0004 (6) |
| C5 | 0.0214 (7) | 0.0183 (7) | 0.0211 (7) | 0.0032 (5) | −0.0020 (5) | 0.0024 (5) |
| C6 | 0.0168 (6) | 0.0155 (7) | 0.0201 (7) | 0.0034 (5) | −0.0012 (5) | −0.0016 (5) |
| C7 | 0.0172 (7) | 0.0159 (6) | 0.0185 (7) | 0.0039 (5) | −0.0032 (5) | 0.0002 (5) |
| C8 | 0.0194 (7) | 0.0153 (6) | 0.0171 (7) | 0.0036 (5) | 0.0000 (5) | −0.0004 (5) |
| C9 | 0.0186 (7) | 0.0136 (6) | 0.0184 (7) | 0.0026 (5) | 0.0005 (5) | 0.0005 (5) |
| C10 | 0.0213 (7) | 0.0135 (6) | 0.0199 (7) | 0.0042 (5) | 0.0015 (5) | 0.0023 (5) |
| C11 | 0.0318 (8) | 0.0256 (8) | 0.0194 (7) | 0.0135 (6) | −0.0016 (6) | 0.0021 (6) |
| C12 | 0.0249 (8) | 0.0235 (8) | 0.0285 (8) | 0.0094 (6) | −0.0008 (6) | 0.0042 (6) |
| S1—C9 | 1.6632 (14) | C1—C6 | 1.394 (2) |
| O1—C10 | 1.3274 (17) | C1—H1 | 0.9500 |
| O1—C11 | 1.4568 (17) | C2—C3 | 1.390 (2) |
| O2—C10 | 1.2142 (18) | C2—H2 | 0.9500 |
| N1—C8 | 1.3194 (18) | C3—C4 | 1.386 (2) |
| N1—C7 | 1.3680 (18) | C3—H3 | 0.9500 |
| N2—C7 | 1.3260 (19) | C4—C5 | 1.385 (2) |
| N2—N3 | 1.3674 (17) | C4—H4 | 0.9500 |
| N3—C8 | 1.3345 (18) | C5—C6 | 1.397 (2) |
| N3—H3N | 0.84 (2) | C5—H5 | 0.9500 |
| N4—C9 | 1.3440 (18) | C6—C7 | 1.4685 (19) |
| N4—C8 | 1.3845 (18) | C11—C12 | 1.501 (2) |
| N4—H4N | 0.84 (2) | C11—H11A | 0.9900 |
| N5—C10 | 1.3803 (18) | C11—H11B | 0.9900 |
| N5—C9 | 1.3811 (18) | C12—H12A | 0.9800 |
| N5—H5N | 0.81 (2) | C12—H12B | 0.9800 |
| C1—C2 | 1.389 (2) | C12—H12C | 0.9800 |
| C10—O1—C11 | 115.00 (11) | C1—C6—C5 | 119.48 (13) |
| C8—N1—C7 | 102.43 (12) | C1—C6—C7 | 120.00 (13) |
| C7—N2—N3 | 102.54 (11) | C5—C6—C7 | 120.52 (13) |
| C8—N3—N2 | 109.22 (12) | N2—C7—N1 | 114.46 (13) |
| C8—N3—H3N | 131.7 (14) | N2—C7—C6 | 122.90 (13) |
| N2—N3—H3N | 118.4 (14) | N1—C7—C6 | 122.64 (13) |
| C9—N4—C8 | 128.91 (13) | N1—C8—N3 | 111.32 (12) |
| C9—N4—H4N | 117.6 (13) | N1—C8—N4 | 121.13 (13) |
| C8—N4—H4N | 113.1 (13) | N3—C8—N4 | 127.42 (13) |
| C10—N5—C9 | 127.10 (13) | N4—C9—N5 | 114.77 (12) |
| C10—N5—H5N | 116.8 (13) | N4—C9—S1 | 125.65 (11) |
| C9—N5—H5N | 115.5 (13) | N5—C9—S1 | 119.58 (11) |
| C2—C1—C6 | 120.04 (14) | O2—C10—O1 | 125.48 (13) |
| C2—C1—H1 | 120.0 | O2—C10—N5 | 125.13 (13) |
| C6—C1—H1 | 120.0 | O1—C10—N5 | 109.38 (12) |
| C1—C2—C3 | 120.18 (14) | O1—C11—C12 | 106.95 (12) |
| C1—C2—H2 | 119.9 | O1—C11—H11A | 110.3 |
| C3—C2—H2 | 119.9 | C12—C11—H11A | 110.3 |
| C4—C3—C2 | 119.88 (14) | O1—C11—H11B | 110.3 |
| C4—C3—H3 | 120.1 | C12—C11—H11B | 110.3 |
| C2—C3—H3 | 120.1 | H11A—C11—H11B | 108.6 |
| C5—C4—C3 | 120.28 (14) | C11—C12—H12A | 109.5 |
| C5—C4—H4 | 119.9 | C11—C12—H12B | 109.5 |
| C3—C4—H4 | 119.9 | H12A—C12—H12B | 109.5 |
| C4—C5—C6 | 120.13 (14) | C11—C12—H12C | 109.5 |
| C4—C5—H5 | 119.9 | H12A—C12—H12C | 109.5 |
| C6—C5—H5 | 119.9 | H12B—C12—H12C | 109.5 |
| H··· | ||||
| N5—H5N···S1i | 0.81 (2) | 2.58 (2) | 3.3739 (13) | 166.0 (17) |
| N4—H4N···O2 | 0.84 (2) | 1.97 (2) | 2.6448 (16) | 137.3 (18) |
| N3—H3N···S1 | 0.84 (2) | 2.67 (2) | 3.0926 (13) | 113.0 (16) |
| N3—H3N···N2ii | 0.84 (2) | 2.32 (2) | 2.9838 (18) | 136.5 (18) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N5—H5 | 0.81 (2) | 2.58 (2) | 3.3739 (13) | 166.0 (17) |
| N4—H4 | 0.84 (2) | 1.97 (2) | 2.6448 (16) | 137.3 (18) |
| N3—H3 | 0.84 (2) | 2.67 (2) | 3.0926 (13) | 113.0 (16) |
| N3—H3 | 0.84 (2) | 2.32 (2) | 2.9838 (18) | 136.5 (18) |
Symmetry codes: (i) ; (ii) .