Literature DB >> 21579260

4-Carbethoxy-1-[4-(N,N-dimethylamino)benzoyl]thiosemicarbazide.

Hriday Bera, Anton V Dolzhenko, Geok Kheng Tan, Lip Lin Koh, Wai Keung Chui.   

Abstract

The mol-ecular structure of the title compound, C(13)H(18)N(4)O(3)S, (systematic name: ethyl N-{2-[4-(dimethyl-amino)benzo-yl]hydrazinethio-carbon-yl}carbamate) is stabilized by intra-molecular N-H⋯O=C hydrogen bonding arranged in an S(6) graph-set motif. In the crystal, inversion dimers connected via inter-molecular N-H⋯S=C hydrogen bonds [R(2) (2)(8) graph-set motif] form sheets parallel to the (21) plane. Dimers are also formed by the mol-ecules via weak inter-molecular N-H⋯S=C hydrogen bonds [R(2) (2)(10) graph-set motif] connecting the sheets.

Entities:  

Year:  2010        PMID: 21579260      PMCID: PMC2979162          DOI: 10.1107/S1600536810015576

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For examples of bioactive 1,4-diacyl substituted thio­semi­carbazides and their metal complexes, see: Angelusiu et al. (2009 ▶); Cunha et al. (2007 ▶); Qandil et al. (2006 ▶). For 4-aroyl-1-[4-(N,N-dimethyl­amino)benzo­yl]thio­semicarbazides as high affinity anion receptors, see: Liu & Jiang (2008 ▶). For the structures of related carbethoxy­thio­ureas, see: Dolzhenko et al. (2010 ▶). For the structures of related 1,4-diacyl thio­semicarbazides, see: Ali et al. (2004 ▶); Xue et al. (2006 ▶); Yamin & Yusof (2003 ▶); Yusof et al. (2003 ▶). For the graph-set analysis of hydrogen bonding, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H18N4O3S M = 310.37 Triclinic, a = 7.876 (4) Å b = 8.184 (4) Å c = 12.086 (6) Å α = 82.290 (12)° β = 74.769 (11)° γ = 84.469 (11)° V = 743.3 (7) Å3 Z = 2 Mo Kα radiation μ = 0.23 mm−1 T = 100 K 0.24 × 0.10 × 0.08 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.946, T max = 0.982 5201 measured reflections 3379 independent reflections 2839 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.081 wR(F 2) = 0.218 S = 1.18 3379 reflections 205 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.84 e Å−3 Δρmin = −0.45 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810015576/ds2029sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810015576/ds2029Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H18N4O3SZ = 2
Mr = 310.37F(000) = 328
Triclinic, P1Dx = 1.387 Mg m3
Hall symbol: -P 1Melting point: 474 K
a = 7.876 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.184 (4) ÅCell parameters from 644 reflections
c = 12.086 (6) Åθ = 2.5–27.4°
α = 82.290 (12)°µ = 0.23 mm1
β = 74.769 (11)°T = 100 K
γ = 84.469 (11)°Rod, colourless
V = 743.3 (7) Å30.24 × 0.10 × 0.08 mm
Bruker SMART APEX CCD diffractometer3379 independent reflections
Radiation source: fine-focus sealed tube2839 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 27.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −9→10
Tmin = 0.946, Tmax = 0.982k = −10→10
5201 measured reflectionsl = −12→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.081Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.218H atoms treated by a mixture of independent and constrained refinement
S = 1.18w = 1/[σ2(Fo2) + (0.0987P)2 + 1.3625P] where P = (Fo2 + 2Fc2)/3
3379 reflections(Δ/σ)max < 0.001
205 parametersΔρmax = 0.84 e Å3
0 restraintsΔρmin = −0.45 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.25106 (11)0.89905 (11)1.00357 (7)0.0123 (3)
O10.6976 (3)1.2062 (3)0.7276 (2)0.0147 (6)
O20.4814 (3)1.1658 (3)0.6437 (2)0.0152 (6)
O30.1155 (3)0.9455 (3)0.6162 (2)0.0146 (6)
N10.4741 (4)1.0685 (4)0.8327 (3)0.0106 (6)
H1N0.534 (7)1.072 (7)0.878 (5)0.037 (15)*
N20.2296 (4)0.9931 (4)0.7882 (3)0.0123 (6)
H2N0.262 (6)1.043 (6)0.719 (4)0.017 (11)*
N30.0781 (4)0.9079 (4)0.8084 (3)0.0138 (7)
H3N0.005 (6)0.926 (5)0.866 (4)0.011 (10)*
N4−0.6011 (4)0.5754 (4)0.7533 (3)0.0218 (8)
C10.9562 (5)1.3511 (5)0.6447 (3)0.0151 (8)
H1A0.91561.43540.69790.023*
H1B1.03411.39970.57300.023*
H1C1.02071.25960.68030.023*
C20.7995 (5)1.2877 (5)0.6182 (3)0.0138 (7)
H2A0.72741.38000.58790.017*
H2B0.83851.20830.56010.017*
C30.5467 (5)1.1491 (4)0.7259 (3)0.0109 (7)
C40.3184 (4)0.9900 (4)0.8667 (3)0.0119 (7)
C60.0248 (4)0.8950 (4)0.7109 (3)0.0109 (7)
C7−0.1384 (4)0.8092 (4)0.7270 (3)0.0108 (7)
C8−0.2115 (5)0.8174 (4)0.6328 (3)0.0122 (7)
H8−0.15580.87780.56190.015*
C9−0.3619 (5)0.7403 (5)0.6401 (3)0.0137 (7)
H9−0.40790.74730.57430.016*
C10−0.4491 (5)0.6506 (4)0.7447 (3)0.0127 (7)
C11−0.3746 (5)0.6417 (5)0.8393 (3)0.0145 (7)
H11−0.42950.58110.91040.017*
C12−0.2221 (5)0.7201 (5)0.8304 (3)0.0124 (7)
H12−0.17420.71290.89550.015*
C13−0.6896 (5)0.4845 (5)0.8622 (4)0.0228 (9)
H13A−0.60840.39620.88530.034*
H13B−0.79330.43630.85270.034*
H13C−0.72660.56000.92190.034*
C14−0.6706 (5)0.5756 (5)0.6535 (3)0.0172 (8)
H14A−0.66490.68610.61030.026*
H14B−0.79350.54560.67890.026*
H14C−0.60040.49530.60370.026*
U11U22U33U12U13U23
S10.0110 (4)0.0190 (5)0.0080 (4)−0.0039 (3)−0.0034 (3)−0.0013 (3)
O10.0134 (12)0.0172 (13)0.0144 (13)−0.0080 (10)−0.0040 (10)0.0009 (10)
O20.0169 (13)0.0166 (13)0.0141 (13)−0.0069 (10)−0.0066 (10)0.0008 (10)
O30.0172 (13)0.0185 (13)0.0092 (12)−0.0073 (10)−0.0032 (10)−0.0018 (10)
N10.0119 (14)0.0123 (14)0.0092 (14)−0.0051 (11)−0.0045 (12)−0.0004 (11)
N20.0122 (14)0.0179 (15)0.0072 (14)−0.0068 (12)−0.0028 (11)0.0024 (12)
N30.0067 (13)0.0220 (17)0.0128 (16)−0.0060 (12)−0.0001 (12)−0.0032 (13)
N40.0201 (17)0.0303 (19)0.0176 (17)−0.0149 (15)−0.0078 (14)0.0034 (14)
C10.0134 (16)0.0133 (17)0.0183 (19)−0.0044 (13)−0.0034 (14)0.0004 (14)
C20.0167 (17)0.0143 (17)0.0107 (17)−0.0068 (14)−0.0019 (14)−0.0010 (13)
C30.0129 (16)0.0051 (15)0.0149 (17)−0.0016 (12)−0.0018 (13)−0.0045 (12)
C40.0110 (16)0.0113 (16)0.0133 (17)0.0005 (13)−0.0031 (13)−0.0024 (13)
C60.0109 (15)0.0101 (16)0.0122 (17)−0.0015 (13)−0.0016 (13)−0.0050 (13)
C70.0091 (15)0.0122 (16)0.0104 (16)−0.0028 (13)−0.0004 (13)−0.0012 (13)
C80.0130 (16)0.0089 (16)0.0142 (17)0.0012 (13)−0.0012 (13)−0.0048 (13)
C90.0164 (17)0.0180 (18)0.0108 (17)−0.0025 (14)−0.0078 (14)−0.0064 (14)
C100.0129 (16)0.0119 (16)0.0144 (18)−0.0030 (13)−0.0040 (14)−0.0025 (13)
C110.0159 (17)0.0163 (18)0.0106 (17)−0.0069 (14)−0.0024 (14)0.0028 (14)
C120.0111 (16)0.0180 (18)0.0096 (16)−0.0035 (13)−0.0049 (13)−0.0004 (13)
C130.0180 (19)0.025 (2)0.026 (2)−0.0121 (16)−0.0032 (16)−0.0026 (17)
C140.0189 (18)0.0167 (18)0.021 (2)−0.0042 (14)−0.0125 (15)−0.0029 (15)
S1—C41.690 (4)C2—H2A0.9900
O1—C31.325 (4)C2—H2B0.9900
O1—C21.465 (4)C6—C71.479 (5)
O2—C31.219 (4)C7—C121.394 (5)
O3—C61.221 (4)C7—C81.396 (5)
N1—C31.374 (5)C8—C91.372 (5)
N1—C41.379 (4)C8—H80.9500
N1—H1N0.82 (6)C9—C101.414 (5)
N2—C41.315 (5)C9—H90.9500
N2—N31.390 (4)C10—C111.407 (5)
N2—H2N0.86 (5)C11—C121.389 (5)
N3—C61.371 (5)C11—H110.9500
N3—H3N0.80 (4)C12—H120.9500
N4—C101.372 (5)C13—H13A0.9800
N4—C141.450 (5)C13—H13B0.9800
N4—C131.458 (5)C13—H13C0.9800
C1—C21.507 (5)C14—H14A0.9800
C1—H1A0.9800C14—H14B0.9800
C1—H1B0.9800C14—H14C0.9800
C1—H1C0.9800
C3—O1—C2116.3 (3)O3—C6—C7123.2 (3)
C3—N1—C4127.1 (3)N3—C6—C7116.7 (3)
C3—N1—H1N112 (4)C12—C7—C8118.4 (3)
C4—N1—H1N121 (4)C12—C7—C6123.7 (3)
C4—N2—N3122.1 (3)C8—C7—C6117.9 (3)
C4—N2—H2N124 (3)C9—C8—C7121.6 (3)
N3—N2—H2N114 (3)C9—C8—H8119.2
C6—N3—N2114.1 (3)C7—C8—H8119.2
C6—N3—H3N119 (3)C8—C9—C10120.6 (3)
N2—N3—H3N114 (3)C8—C9—H9119.7
C10—N4—C14121.0 (3)C10—C9—H9119.7
C10—N4—C13120.2 (3)N4—C10—C11121.3 (3)
C14—N4—C13118.7 (3)N4—C10—C9121.0 (3)
C2—C1—H1A109.5C11—C10—C9117.7 (3)
C2—C1—H1B109.5C12—C11—C10121.0 (3)
H1A—C1—H1B109.5C12—C11—H11119.5
C2—C1—H1C109.5C10—C11—H11119.5
H1A—C1—H1C109.5C11—C12—C7120.7 (3)
H1B—C1—H1C109.5C11—C12—H12119.7
O1—C2—C1106.0 (3)C7—C12—H12119.7
O1—C2—H2A110.5N4—C13—H13A109.5
C1—C2—H2A110.5N4—C13—H13B109.5
O1—C2—H2B110.5H13A—C13—H13B109.5
C1—C2—H2B110.5N4—C13—H13C109.5
H2A—C2—H2B108.7H13A—C13—H13C109.5
O2—C3—O1126.1 (3)H13B—C13—H13C109.5
O2—C3—N1125.2 (3)N4—C14—H14A109.5
O1—C3—N1108.7 (3)N4—C14—H14B109.5
N2—C4—N1116.4 (3)H14A—C14—H14B109.5
N2—C4—S1123.9 (3)N4—C14—H14C109.5
N1—C4—S1119.7 (3)H14A—C14—H14C109.5
O3—C6—N3120.0 (3)H14B—C14—H14C109.5
C4—N2—N3—C6−166.5 (3)N3—C6—C7—C8169.8 (3)
C3—O1—C2—C1176.1 (3)C12—C7—C8—C90.0 (5)
C2—O1—C3—O2−4.1 (5)C6—C7—C8—C9179.5 (3)
C2—O1—C3—N1176.4 (3)C7—C8—C9—C100.6 (5)
C4—N1—C3—O21.2 (6)C14—N4—C10—C11−175.8 (3)
C4—N1—C3—O1−179.3 (3)C13—N4—C10—C110.3 (6)
N3—N2—C4—N1174.8 (3)C14—N4—C10—C94.3 (6)
N3—N2—C4—S1−6.0 (5)C13—N4—C10—C9−179.5 (4)
C3—N1—C4—N2−0.2 (5)C8—C9—C10—N4178.9 (3)
C3—N1—C4—S1−179.4 (3)C8—C9—C10—C11−0.9 (5)
N2—N3—C6—O35.2 (5)N4—C10—C11—C12−179.1 (4)
N2—N3—C6—C7−178.5 (3)C9—C10—C11—C120.8 (5)
O3—C6—C7—C12165.6 (4)C10—C11—C12—C7−0.3 (6)
N3—C6—C7—C12−10.6 (5)C8—C7—C12—C11−0.1 (5)
O3—C6—C7—C8−13.9 (5)C6—C7—C12—C11−179.6 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···S1i0.82 (6)2.53 (6)3.342 (3)173 (5)
N3—H3N···S1ii0.80 (4)2.64 (5)3.385 (4)156 (4)
N2—H2N···O20.86 (5)2.02 (5)2.653 (4)130 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯S1i0.82 (6)2.53 (6)3.342 (3)173 (5)
N3—H3N⋯S1ii0.80 (4)2.64 (5)3.385 (4)156 (4)
N2—H2N⋯O20.86 (5)2.02 (5)2.653 (4)130 (4)

Symmetry codes: (i) ; (ii) .

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