| Literature DB >> 21579260 |
Hriday Bera, Anton V Dolzhenko, Geok Kheng Tan, Lip Lin Koh, Wai Keung Chui.
Abstract
The mol-ecular structure of the title compound, C(13)H(18)N(4)O(3)S, (systematic name: ethyl N-{2-[4-(dimethyl-amino)benzo-yl]hydrazinethio-carbon-yl}carbamate) is stabilized by intra-molecular N-H⋯O=C hydrogen bonding arranged in an S(6) graph-set motif. In the crystal, inversion dimers connected via inter-molecular N-H⋯S=C hydrogen bonds [R(2) (2)(8) graph-set motif] form sheets parallel to the (21) plane. Dimers are also formed by the mol-ecules via weak inter-molecular N-H⋯S=C hydrogen bonds [R(2) (2)(10) graph-set motif] connecting the sheets.Entities:
Year: 2010 PMID: 21579260 PMCID: PMC2979162 DOI: 10.1107/S1600536810015576
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H18N4O3S | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 474 K |
| Mo | |
| Cell parameters from 644 reflections | |
| θ = 2.5–27.4° | |
| α = 82.290 (12)° | µ = 0.23 mm−1 |
| β = 74.769 (11)° | |
| γ = 84.469 (11)° | Rod, colourless |
| 0.24 × 0.10 × 0.08 mm |
| Bruker SMART APEX CCD diffractometer | 3379 independent reflections |
| Radiation source: fine-focus sealed tube | 2839 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 5201 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3379 reflections | (Δ/σ)max < 0.001 |
| 205 parameters | Δρmax = 0.84 e Å−3 |
| 0 restraints | Δρmin = −0.45 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.25106 (11) | 0.89905 (11) | 1.00357 (7) | 0.0123 (3) | |
| O1 | 0.6976 (3) | 1.2062 (3) | 0.7276 (2) | 0.0147 (6) | |
| O2 | 0.4814 (3) | 1.1658 (3) | 0.6437 (2) | 0.0152 (6) | |
| O3 | 0.1155 (3) | 0.9455 (3) | 0.6162 (2) | 0.0146 (6) | |
| N1 | 0.4741 (4) | 1.0685 (4) | 0.8327 (3) | 0.0106 (6) | |
| H1N | 0.534 (7) | 1.072 (7) | 0.878 (5) | 0.037 (15)* | |
| N2 | 0.2296 (4) | 0.9931 (4) | 0.7882 (3) | 0.0123 (6) | |
| H2N | 0.262 (6) | 1.043 (6) | 0.719 (4) | 0.017 (11)* | |
| N3 | 0.0781 (4) | 0.9079 (4) | 0.8084 (3) | 0.0138 (7) | |
| H3N | 0.005 (6) | 0.926 (5) | 0.866 (4) | 0.011 (10)* | |
| N4 | −0.6011 (4) | 0.5754 (4) | 0.7533 (3) | 0.0218 (8) | |
| C1 | 0.9562 (5) | 1.3511 (5) | 0.6447 (3) | 0.0151 (8) | |
| H1A | 0.9156 | 1.4354 | 0.6979 | 0.023* | |
| H1B | 1.0341 | 1.3997 | 0.5730 | 0.023* | |
| H1C | 1.0207 | 1.2596 | 0.6803 | 0.023* | |
| C2 | 0.7995 (5) | 1.2877 (5) | 0.6182 (3) | 0.0138 (7) | |
| H2A | 0.7274 | 1.3800 | 0.5879 | 0.017* | |
| H2B | 0.8385 | 1.2083 | 0.5601 | 0.017* | |
| C3 | 0.5467 (5) | 1.1491 (4) | 0.7259 (3) | 0.0109 (7) | |
| C4 | 0.3184 (4) | 0.9900 (4) | 0.8667 (3) | 0.0119 (7) | |
| C6 | 0.0248 (4) | 0.8950 (4) | 0.7109 (3) | 0.0109 (7) | |
| C7 | −0.1384 (4) | 0.8092 (4) | 0.7270 (3) | 0.0108 (7) | |
| C8 | −0.2115 (5) | 0.8174 (4) | 0.6328 (3) | 0.0122 (7) | |
| H8 | −0.1558 | 0.8778 | 0.5619 | 0.015* | |
| C9 | −0.3619 (5) | 0.7403 (5) | 0.6401 (3) | 0.0137 (7) | |
| H9 | −0.4079 | 0.7473 | 0.5743 | 0.016* | |
| C10 | −0.4491 (5) | 0.6506 (4) | 0.7447 (3) | 0.0127 (7) | |
| C11 | −0.3746 (5) | 0.6417 (5) | 0.8393 (3) | 0.0145 (7) | |
| H11 | −0.4295 | 0.5811 | 0.9104 | 0.017* | |
| C12 | −0.2221 (5) | 0.7201 (5) | 0.8304 (3) | 0.0124 (7) | |
| H12 | −0.1742 | 0.7129 | 0.8955 | 0.015* | |
| C13 | −0.6896 (5) | 0.4845 (5) | 0.8622 (4) | 0.0228 (9) | |
| H13A | −0.6084 | 0.3962 | 0.8853 | 0.034* | |
| H13B | −0.7933 | 0.4363 | 0.8527 | 0.034* | |
| H13C | −0.7266 | 0.5600 | 0.9219 | 0.034* | |
| C14 | −0.6706 (5) | 0.5756 (5) | 0.6535 (3) | 0.0172 (8) | |
| H14A | −0.6649 | 0.6861 | 0.6103 | 0.026* | |
| H14B | −0.7935 | 0.5456 | 0.6789 | 0.026* | |
| H14C | −0.6004 | 0.4953 | 0.6037 | 0.026* |
| S1 | 0.0110 (4) | 0.0190 (5) | 0.0080 (4) | −0.0039 (3) | −0.0034 (3) | −0.0013 (3) |
| O1 | 0.0134 (12) | 0.0172 (13) | 0.0144 (13) | −0.0080 (10) | −0.0040 (10) | 0.0009 (10) |
| O2 | 0.0169 (13) | 0.0166 (13) | 0.0141 (13) | −0.0069 (10) | −0.0066 (10) | 0.0008 (10) |
| O3 | 0.0172 (13) | 0.0185 (13) | 0.0092 (12) | −0.0073 (10) | −0.0032 (10) | −0.0018 (10) |
| N1 | 0.0119 (14) | 0.0123 (14) | 0.0092 (14) | −0.0051 (11) | −0.0045 (12) | −0.0004 (11) |
| N2 | 0.0122 (14) | 0.0179 (15) | 0.0072 (14) | −0.0068 (12) | −0.0028 (11) | 0.0024 (12) |
| N3 | 0.0067 (13) | 0.0220 (17) | 0.0128 (16) | −0.0060 (12) | −0.0001 (12) | −0.0032 (13) |
| N4 | 0.0201 (17) | 0.0303 (19) | 0.0176 (17) | −0.0149 (15) | −0.0078 (14) | 0.0034 (14) |
| C1 | 0.0134 (16) | 0.0133 (17) | 0.0183 (19) | −0.0044 (13) | −0.0034 (14) | 0.0004 (14) |
| C2 | 0.0167 (17) | 0.0143 (17) | 0.0107 (17) | −0.0068 (14) | −0.0019 (14) | −0.0010 (13) |
| C3 | 0.0129 (16) | 0.0051 (15) | 0.0149 (17) | −0.0016 (12) | −0.0018 (13) | −0.0045 (12) |
| C4 | 0.0110 (16) | 0.0113 (16) | 0.0133 (17) | 0.0005 (13) | −0.0031 (13) | −0.0024 (13) |
| C6 | 0.0109 (15) | 0.0101 (16) | 0.0122 (17) | −0.0015 (13) | −0.0016 (13) | −0.0050 (13) |
| C7 | 0.0091 (15) | 0.0122 (16) | 0.0104 (16) | −0.0028 (13) | −0.0004 (13) | −0.0012 (13) |
| C8 | 0.0130 (16) | 0.0089 (16) | 0.0142 (17) | 0.0012 (13) | −0.0012 (13) | −0.0048 (13) |
| C9 | 0.0164 (17) | 0.0180 (18) | 0.0108 (17) | −0.0025 (14) | −0.0078 (14) | −0.0064 (14) |
| C10 | 0.0129 (16) | 0.0119 (16) | 0.0144 (18) | −0.0030 (13) | −0.0040 (14) | −0.0025 (13) |
| C11 | 0.0159 (17) | 0.0163 (18) | 0.0106 (17) | −0.0069 (14) | −0.0024 (14) | 0.0028 (14) |
| C12 | 0.0111 (16) | 0.0180 (18) | 0.0096 (16) | −0.0035 (13) | −0.0049 (13) | −0.0004 (13) |
| C13 | 0.0180 (19) | 0.025 (2) | 0.026 (2) | −0.0121 (16) | −0.0032 (16) | −0.0026 (17) |
| C14 | 0.0189 (18) | 0.0167 (18) | 0.021 (2) | −0.0042 (14) | −0.0125 (15) | −0.0029 (15) |
| S1—C4 | 1.690 (4) | C2—H2A | 0.9900 |
| O1—C3 | 1.325 (4) | C2—H2B | 0.9900 |
| O1—C2 | 1.465 (4) | C6—C7 | 1.479 (5) |
| O2—C3 | 1.219 (4) | C7—C12 | 1.394 (5) |
| O3—C6 | 1.221 (4) | C7—C8 | 1.396 (5) |
| N1—C3 | 1.374 (5) | C8—C9 | 1.372 (5) |
| N1—C4 | 1.379 (4) | C8—H8 | 0.9500 |
| N1—H1N | 0.82 (6) | C9—C10 | 1.414 (5) |
| N2—C4 | 1.315 (5) | C9—H9 | 0.9500 |
| N2—N3 | 1.390 (4) | C10—C11 | 1.407 (5) |
| N2—H2N | 0.86 (5) | C11—C12 | 1.389 (5) |
| N3—C6 | 1.371 (5) | C11—H11 | 0.9500 |
| N3—H3N | 0.80 (4) | C12—H12 | 0.9500 |
| N4—C10 | 1.372 (5) | C13—H13A | 0.9800 |
| N4—C14 | 1.450 (5) | C13—H13B | 0.9800 |
| N4—C13 | 1.458 (5) | C13—H13C | 0.9800 |
| C1—C2 | 1.507 (5) | C14—H14A | 0.9800 |
| C1—H1A | 0.9800 | C14—H14B | 0.9800 |
| C1—H1B | 0.9800 | C14—H14C | 0.9800 |
| C1—H1C | 0.9800 | ||
| C3—O1—C2 | 116.3 (3) | O3—C6—C7 | 123.2 (3) |
| C3—N1—C4 | 127.1 (3) | N3—C6—C7 | 116.7 (3) |
| C3—N1—H1N | 112 (4) | C12—C7—C8 | 118.4 (3) |
| C4—N1—H1N | 121 (4) | C12—C7—C6 | 123.7 (3) |
| C4—N2—N3 | 122.1 (3) | C8—C7—C6 | 117.9 (3) |
| C4—N2—H2N | 124 (3) | C9—C8—C7 | 121.6 (3) |
| N3—N2—H2N | 114 (3) | C9—C8—H8 | 119.2 |
| C6—N3—N2 | 114.1 (3) | C7—C8—H8 | 119.2 |
| C6—N3—H3N | 119 (3) | C8—C9—C10 | 120.6 (3) |
| N2—N3—H3N | 114 (3) | C8—C9—H9 | 119.7 |
| C10—N4—C14 | 121.0 (3) | C10—C9—H9 | 119.7 |
| C10—N4—C13 | 120.2 (3) | N4—C10—C11 | 121.3 (3) |
| C14—N4—C13 | 118.7 (3) | N4—C10—C9 | 121.0 (3) |
| C2—C1—H1A | 109.5 | C11—C10—C9 | 117.7 (3) |
| C2—C1—H1B | 109.5 | C12—C11—C10 | 121.0 (3) |
| H1A—C1—H1B | 109.5 | C12—C11—H11 | 119.5 |
| C2—C1—H1C | 109.5 | C10—C11—H11 | 119.5 |
| H1A—C1—H1C | 109.5 | C11—C12—C7 | 120.7 (3) |
| H1B—C1—H1C | 109.5 | C11—C12—H12 | 119.7 |
| O1—C2—C1 | 106.0 (3) | C7—C12—H12 | 119.7 |
| O1—C2—H2A | 110.5 | N4—C13—H13A | 109.5 |
| C1—C2—H2A | 110.5 | N4—C13—H13B | 109.5 |
| O1—C2—H2B | 110.5 | H13A—C13—H13B | 109.5 |
| C1—C2—H2B | 110.5 | N4—C13—H13C | 109.5 |
| H2A—C2—H2B | 108.7 | H13A—C13—H13C | 109.5 |
| O2—C3—O1 | 126.1 (3) | H13B—C13—H13C | 109.5 |
| O2—C3—N1 | 125.2 (3) | N4—C14—H14A | 109.5 |
| O1—C3—N1 | 108.7 (3) | N4—C14—H14B | 109.5 |
| N2—C4—N1 | 116.4 (3) | H14A—C14—H14B | 109.5 |
| N2—C4—S1 | 123.9 (3) | N4—C14—H14C | 109.5 |
| N1—C4—S1 | 119.7 (3) | H14A—C14—H14C | 109.5 |
| O3—C6—N3 | 120.0 (3) | H14B—C14—H14C | 109.5 |
| C4—N2—N3—C6 | −166.5 (3) | N3—C6—C7—C8 | 169.8 (3) |
| C3—O1—C2—C1 | 176.1 (3) | C12—C7—C8—C9 | 0.0 (5) |
| C2—O1—C3—O2 | −4.1 (5) | C6—C7—C8—C9 | 179.5 (3) |
| C2—O1—C3—N1 | 176.4 (3) | C7—C8—C9—C10 | 0.6 (5) |
| C4—N1—C3—O2 | 1.2 (6) | C14—N4—C10—C11 | −175.8 (3) |
| C4—N1—C3—O1 | −179.3 (3) | C13—N4—C10—C11 | 0.3 (6) |
| N3—N2—C4—N1 | 174.8 (3) | C14—N4—C10—C9 | 4.3 (6) |
| N3—N2—C4—S1 | −6.0 (5) | C13—N4—C10—C9 | −179.5 (4) |
| C3—N1—C4—N2 | −0.2 (5) | C8—C9—C10—N4 | 178.9 (3) |
| C3—N1—C4—S1 | −179.4 (3) | C8—C9—C10—C11 | −0.9 (5) |
| N2—N3—C6—O3 | 5.2 (5) | N4—C10—C11—C12 | −179.1 (4) |
| N2—N3—C6—C7 | −178.5 (3) | C9—C10—C11—C12 | 0.8 (5) |
| O3—C6—C7—C12 | 165.6 (4) | C10—C11—C12—C7 | −0.3 (6) |
| N3—C6—C7—C12 | −10.6 (5) | C8—C7—C12—C11 | −0.1 (5) |
| O3—C6—C7—C8 | −13.9 (5) | C6—C7—C12—C11 | −179.6 (3) |
| H··· | ||||
| N1—H1N···S1i | 0.82 (6) | 2.53 (6) | 3.342 (3) | 173 (5) |
| N3—H3N···S1ii | 0.80 (4) | 2.64 (5) | 3.385 (4) | 156 (4) |
| N2—H2N···O2 | 0.86 (5) | 2.02 (5) | 2.653 (4) | 130 (4) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.82 (6) | 2.53 (6) | 3.342 (3) | 173 (5) |
| N3—H3 | 0.80 (4) | 2.64 (5) | 3.385 (4) | 156 (4) |
| N2—H2 | 0.86 (5) | 2.02 (5) | 2.653 (4) | 130 (4) |
Symmetry codes: (i) ; (ii) .