Literature DB >> 21588976

3-Ethyl-4-[3-(1H-imidazol-1-yl)prop-yl]-5-phenyl-4H-1,2,4-triazole dihydrate.

Anuradha Gurumoorthy, Vasuki Gopalsamy, Dilek Unlüer, Esra Düğdü, Babu Varghesee.   

Abstract

In the title compound, C(16)H(19)N(5)·2H(2)O, the triazole ring makes dihedral angles of 70.61 (6) and 41.89 (8)°, respectively, with the imidazole and benzene rings. The water mol-ecules are involved in inter-molecular O-H⋯N and O-H⋯O hydrogen bonds, which stabilize the crystal packing.

Entities:  

Year:  2010        PMID: 21588976      PMCID: PMC3008975          DOI: 10.1107/S160053681003936X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Rizzoli et al. (2009 ▶); Kalkan et al. (2007 ▶). For bond lengths and angles in triazole rings, see: Thenmozhi et al. (2010 ▶); Rizzoli et al. (2009 ▶); Dolzhenko et al. (2010 ▶); Ocak Ískeleli et al. (2005 ▶); Ünver et al. (2010 ▶). For the biological activity of triazole Schiff bases, see: Thenmozhi et al. (2010 ▶) and of 1,2,4-triazole derivatives, see: Ünver et al. (2010 ▶). For the search for and synthesis of new anti­biotics, see: Köysal et al. (2006 ▶). For the synthesis, see: Ünver et al. (2009 ▶).

Experimental

Crystal data

C16H19N5·2H2O M = 317.39 Monoclinic, a = 11.0787 (16) Å b = 9.8428 (8) Å c = 16.3289 (18) Å β = 105.602 (9)° V = 1715.0 (3) Å3 Z = 4 Cu Kα radiation μ = 0.68 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan North et al. (1968 ▶) T min = 0.821, T max = 0.876 3030 measured reflections 2868 independent reflections 2166 reflections with I > 2σ(I) R int = 0.029 2 standard reflections every 60 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.123 S = 1.08 2868 reflections 226 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: MolEN (Fair, 1990 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ZORTEP (Zsolnai, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681003936X/jh2213sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003936X/jh2213Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H19N5·2H2OF(000) = 680
Mr = 317.39Dx = 1.229 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54180 Å
a = 11.0787 (16) ÅCell parameters from 25 reflections
b = 9.8428 (8) Åθ = 20–30°
c = 16.3289 (18) ŵ = 0.68 mm1
β = 105.602 (9)°T = 293 K
V = 1715.0 (3) Å3Block, colourless
Z = 40.30 × 0.20 × 0.20 mm
Enraf–Nonius CAD-4 Diffractometer2166 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.029
graphiteθmax = 64.9°, θmin = 4.1°
ω–2τ scanh = 0→13
Absorption correction: ψ scan North et al. (1968)k = 0→11
Tmin = 0.821, Tmax = 0.876l = −19→18
3030 measured reflections2 standard reflections every 60 min
2868 independent reflections intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.123w = 1/[σ2(Fo2) + (0.0676P)2 + 0.2107P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2868 reflectionsΔρmax = 0.19 e Å3
226 parametersΔρmin = −0.17 e Å3
6 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0246 (12)
Experimental. Number of psi-scan sets used was 5 Theta correction was applied. Averaged transmission function was used. No Fourier smoothing was applied.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.10619 (16)0.09615 (18)0.08555 (11)0.0519 (4)
H11.05540.02180.08780.062*
C21.23425 (18)0.0845 (2)0.11690 (12)0.0609 (5)
H21.26920.00260.14000.073*
C31.31051 (18)0.1935 (2)0.11417 (12)0.0655 (6)
H31.39700.18550.13540.079*
C41.25803 (18)0.3152 (2)0.07964 (12)0.0623 (5)
H41.30940.38930.07790.075*
C51.13010 (17)0.32727 (17)0.04779 (11)0.0509 (4)
H51.09560.40920.02420.061*
C61.05207 (15)0.21742 (16)0.05067 (10)0.0429 (4)
C70.91650 (15)0.23322 (16)0.01343 (10)0.0430 (4)
C80.71432 (16)0.23090 (19)−0.00821 (11)0.0529 (5)
C90.58650 (18)0.2091 (3)0.00312 (15)0.0772 (6)
H9A0.56890.11240.00050.093*
H9B0.58560.24060.05920.093*
C100.4853 (2)0.2794 (3)−0.06124 (19)0.1100 (10)
H10A0.50270.3750−0.06000.165*
H10B0.40660.2646−0.04860.165*
H10C0.48130.2441−0.11670.165*
C110.83527 (17)0.11825 (17)0.12819 (10)0.0496 (4)
H11A0.77540.15760.15510.060*
H11B0.91850.13590.16480.060*
C120.81484 (18)−0.03413 (18)0.12166 (11)0.0571 (5)
H12A0.8667−0.07320.08840.069*
H12B0.7279−0.05290.09250.069*
C130.8473 (2)−0.0997 (2)0.20926 (13)0.0658 (5)
H13A0.7918−0.06430.24110.079*
H13B0.8335−0.19690.20290.079*
C141.0814 (2)−0.1225 (2)0.23923 (13)0.0618 (5)
H141.0804−0.18140.19450.074*
C151.1436 (2)0.0064 (2)0.34639 (14)0.0700 (6)
H151.19590.05430.39120.084*
C161.0180 (2)0.0092 (2)0.32597 (12)0.0655 (5)
H160.96850.05840.35320.079*
N10.86819 (13)0.29858 (15)−0.05759 (9)0.0524 (4)
N20.73910 (14)0.29737 (16)−0.07142 (10)0.0572 (4)
N30.82282 (12)0.18678 (13)0.04670 (8)0.0455 (4)
N40.97689 (15)−0.07477 (15)0.25699 (9)0.0564 (4)
N51.18406 (17)−0.07686 (18)0.29187 (11)0.0692 (5)
O10.60569 (16)0.10016 (18)0.26136 (10)0.0807 (5)
O20.43707 (15)−0.11055 (19)0.28415 (13)0.0920 (6)
H1A0.554 (2)0.030 (2)0.2642 (16)0.127 (11)*
H1B0.650 (2)0.121 (3)0.3147 (9)0.134 (11)*
H2A0.3579 (13)−0.096 (2)0.2882 (17)0.105 (9)*
H2B0.444 (2)−0.2016 (12)0.277 (2)0.154 (14)*
U11U22U33U12U13U23
C10.0520 (10)0.0489 (10)0.0551 (10)−0.0035 (8)0.0146 (8)0.0050 (8)
C20.0562 (11)0.0673 (12)0.0575 (11)0.0090 (9)0.0124 (8)0.0122 (9)
C30.0467 (11)0.0881 (15)0.0583 (11)−0.0024 (10)0.0086 (8)−0.0020 (10)
C40.0537 (11)0.0680 (12)0.0668 (12)−0.0186 (9)0.0190 (9)−0.0075 (10)
C50.0543 (11)0.0451 (9)0.0560 (10)−0.0047 (8)0.0193 (8)−0.0015 (8)
C60.0464 (10)0.0417 (8)0.0423 (8)−0.0029 (7)0.0152 (7)−0.0023 (7)
C70.0455 (9)0.0376 (8)0.0483 (9)−0.0039 (7)0.0169 (7)−0.0005 (7)
C80.0472 (10)0.0528 (10)0.0598 (10)−0.0034 (8)0.0163 (8)0.0020 (8)
C90.0505 (12)0.0929 (16)0.0929 (15)−0.0052 (11)0.0271 (11)0.0124 (13)
C100.0514 (14)0.151 (3)0.131 (2)0.0045 (15)0.0297 (14)0.031 (2)
C110.0578 (10)0.0464 (9)0.0489 (9)−0.0042 (8)0.0218 (8)−0.0010 (7)
C120.0665 (12)0.0479 (10)0.0615 (11)−0.0122 (8)0.0252 (9)−0.0007 (8)
C130.0780 (14)0.0530 (11)0.0757 (13)−0.0041 (10)0.0366 (11)0.0124 (10)
C140.0839 (15)0.0492 (10)0.0594 (11)0.0147 (10)0.0314 (11)0.0078 (9)
C150.0886 (16)0.0605 (12)0.0631 (12)0.0040 (11)0.0240 (11)0.0049 (10)
C160.0951 (16)0.0532 (11)0.0590 (11)0.0097 (10)0.0394 (11)0.0041 (9)
N10.0461 (8)0.0548 (9)0.0562 (8)−0.0011 (7)0.0137 (6)0.0098 (7)
N20.0439 (9)0.0624 (9)0.0638 (9)−0.0005 (7)0.0121 (7)0.0096 (8)
N30.0477 (8)0.0424 (7)0.0485 (7)−0.0045 (6)0.0163 (6)0.0002 (6)
N40.0741 (11)0.0474 (8)0.0559 (8)0.0066 (7)0.0314 (8)0.0092 (7)
N50.0786 (12)0.0630 (11)0.0704 (10)0.0143 (9)0.0278 (9)0.0130 (9)
O10.0767 (11)0.0899 (12)0.0706 (10)−0.0057 (9)0.0114 (8)0.0019 (8)
O20.0619 (10)0.0805 (12)0.1268 (15)0.0036 (8)0.0135 (9)−0.0038 (10)
C1—C21.377 (2)C11—N31.465 (2)
C1—C61.387 (2)C11—C121.516 (2)
C1—H10.9300C11—H11A0.9700
C2—C31.373 (3)C11—H11B0.9700
C2—H20.9300C12—C131.522 (3)
C3—C41.384 (3)C12—H12A0.9700
C3—H30.9300C12—H12B0.9700
C4—C51.377 (3)C13—N41.459 (2)
C4—H40.9300C13—H13A0.9700
C5—C61.393 (2)C13—H13B0.9700
C5—H50.9300C14—N51.307 (3)
C6—C71.469 (2)C14—N41.352 (2)
C7—N11.308 (2)C14—H140.9300
C7—N31.373 (2)C15—C161.341 (3)
C8—N21.312 (2)C15—N51.371 (3)
C8—N31.363 (2)C15—H150.9300
C8—C91.492 (3)C16—N41.372 (2)
C9—C101.485 (3)C16—H160.9300
C9—H9A0.9700N1—N21.387 (2)
C9—H9B0.9700O1—H1A0.906 (10)
C10—H10A0.9600O1—H1B0.902 (10)
C10—H10B0.9600O2—H2A0.909 (9)
C10—H10C0.9600O2—H2B0.910 (10)
C2—C1—C6120.80 (16)N3—C11—H11A108.6
C2—C1—H1119.6C12—C11—H11A108.6
C6—C1—H1119.6N3—C11—H11B108.6
C3—C2—C1120.29 (18)C12—C11—H11B108.6
C3—C2—H2119.9H11A—C11—H11B107.6
C1—C2—H2119.9C11—C12—C13111.13 (15)
C2—C3—C4119.64 (18)C11—C12—H12A109.4
C2—C3—H3120.2C13—C12—H12A109.4
C4—C3—H3120.2C11—C12—H12B109.4
C5—C4—C3120.35 (18)C13—C12—H12B109.4
C5—C4—H4119.8H12A—C12—H12B108.0
C3—C4—H4119.8N4—C13—C12112.37 (15)
C4—C5—C6120.35 (17)N4—C13—H13A109.1
C4—C5—H5119.8C12—C13—H13A109.1
C6—C5—H5119.8N4—C13—H13B109.1
C1—C6—C5118.56 (16)C12—C13—H13B109.1
C1—C6—C7122.80 (14)H13A—C13—H13B107.9
C5—C6—C7118.59 (15)N5—C14—N4112.54 (18)
N1—C7—N3110.00 (14)N5—C14—H14123.7
N1—C7—C6123.22 (14)N4—C14—H14123.7
N3—C7—C6126.76 (14)C16—C15—N5110.43 (19)
N2—C8—N3110.02 (15)C16—C15—H15124.8
N2—C8—C9125.15 (17)N5—C15—H15124.8
N3—C8—C9124.82 (17)C15—C16—N4106.56 (17)
C10—C9—C8113.94 (19)C15—C16—H16126.7
C10—C9—H9A108.8N4—C16—H16126.7
C8—C9—H9A108.8C7—N1—N2107.35 (13)
C10—C9—H9B108.8C8—N2—N1107.52 (13)
C8—C9—H9B108.8C8—N3—C7105.09 (14)
H9A—C9—H9B107.7C8—N3—C11126.52 (14)
C9—C10—H10A109.5C7—N3—C11128.05 (14)
C9—C10—H10B109.5C14—N4—C16105.73 (17)
H10A—C10—H10B109.5C14—N4—C13127.14 (17)
C9—C10—H10C109.5C16—N4—C13127.00 (17)
H10A—C10—H10C109.5C14—N5—C15104.73 (18)
H10B—C10—H10C109.5H1A—O1—H1B108.4 (14)
N3—C11—C12114.56 (14)H2A—O2—H2B106.5 (14)
C6—C1—C2—C30.1 (3)C6—C7—N3—C8177.38 (15)
C1—C2—C3—C4−0.1 (3)N1—C7—N3—C11−174.85 (15)
C2—C3—C4—C5−0.3 (3)C6—C7—N3—C113.7 (3)
C3—C4—C5—C60.6 (3)C12—C11—N3—C884.7 (2)
C2—C1—C6—C50.2 (3)C12—C11—N3—C7−102.89 (19)
C2—C1—C6—C7177.55 (16)N5—C14—N4—C160.8 (2)
C4—C5—C6—C1−0.5 (2)N5—C14—N4—C13176.98 (15)
C4—C5—C6—C7−177.98 (15)C15—C16—N4—C14−0.6 (2)
C1—C6—C7—N1−137.55 (18)C15—C16—N4—C13−176.81 (16)
C5—C6—C7—N139.8 (2)C12—C13—N4—C14−67.3 (2)
C1—C6—C7—N344.1 (2)C12—C13—N4—C16108.1 (2)
C5—C6—C7—N3−138.58 (17)N4—C14—N5—C15−0.6 (2)
N2—C8—C9—C10−4.5 (3)C16—C15—N5—C140.2 (2)
N3—C8—C9—C10174.1 (2)C7—N3—C11—C12−102.89 (19)
N3—C11—C12—C13172.00 (15)C6—C7—N3—C113.7 (3)
C11—C12—C13—N4−58.7 (2)C6—C7—N3—C8177.38 (15)
N5—C15—C16—N40.3 (2)N1—C7—N3—C11−174.85 (15)
N3—C7—N1—N20.85 (18)N2—C8—N3—C11174.88 (15)
C6—C7—N1—N2−177.79 (14)C9—C8—N3—C11−3.9 (3)
N3—C8—N2—N1−0.6 (2)C5—C6—C7—N139.8 (2)
C9—C8—N2—N1178.21 (19)N1—C7—C6—C1−137.55 (18)
C7—N1—N2—C8−0.15 (19)N3—C7—C6—C144.1 (2)
N2—C8—N3—C71.09 (19)N2—C8—C9—C10−4.5 (3)
C9—C8—N3—C7−177.73 (19)C10—C9—C8—N3174.1 (2)
N2—C8—N3—C11174.88 (15)N4—C13—C12—C11−58.7 (2)
C9—C8—N3—C11−3.9 (3)N3—C11—C12—C13172.00 (15)
N1—C7—N3—C8−1.19 (18)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O20.91 (1)1.98 (1)2.882 (3)172 (3)
O1—H1B···N2i0.90 (1)2.02 (1)2.913 (2)170 (3)
O2—H2A···N5ii0.91 (1)1.95 (1)2.859 (3)176 (2)
O2—H2B···O1iii0.91 (1)2.08 (2)2.949 (3)160 (3)
C7—N11.308 (2)
C7—N31.373 (2)
C8—N21.312 (2)
C8—N31.363 (2)
N1—N21.387 (2)
C8—N3—C7105.09 (14)
C8—N3—C11126.52 (14)
C7—N3—C11128.05 (14)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O20.91 (1)1.98 (1)2.882 (3)172 (3)
O1—H1B⋯N2i0.90 (1)2.02 (1)2.913 (2)170 (3)
O2—H2A⋯N5ii0.91 (1)1.95 (1)2.859 (3)176 (2)
O2—H2B⋯O1iii0.91 (1)2.08 (2)2.949 (3)160 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-06

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-08

6.  (E)-N-Benzyl-idene-4H-1,2,4-triazol-4-amine.

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  6 in total
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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-14

2.  Crystal structure of 5-(5,6-di-hydro-benzo[4,5]imidazo[1,2-c]quinazolin-6-yl)-2-meth-oxy-phenol.

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