Literature DB >> 23723775

Poly[[aqua-{μ4-2-[(carb-oxy-meth-yl)sulfan-yl]nicotinato-κ(4) O:O':O'':O'''}copper(II)] trihydrate].

Wei-Qi Li1.   

Abstract

In the polymeric title complex, {[Cu(C8H5NO4S)(H2O)]·3H2O} n , the Cu(II) cation is coordinated by one water mol-ecule and four carboxyl-ate O atoms from four 2-[(carb-oxy-meth-yl)sulfan-yl]nicotinate anions in a distorted square-pyramidal geometry. The 2-[(carb-oxy-meth-yl)sulfan-yl]nicotinate anion bridges four Cu(II) cations, forming a two-dimensional polymeric complex parallel to the bc plane. In the crystal, O-H⋯O, O-H⋯N and O-H⋯S hydrogen bonds link the complex mol-ecules and lattice water mol-ecules into a three-dimensional supra-molecular architecture.

Entities:  

Year:  2013        PMID: 23723775      PMCID: PMC3647809          DOI: 10.1107/S1600536813009604

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the 2-[(carb­oxy­meth­yl)sulfan­yl]nicotinato ligand, see: Wang & Feng (2010 ▶). For related compounds, see: Jiang et al. (2012 ▶). For metal complexes with 2-mercaptonanicotinate ligands, see: Humphrey et al. (2006 ▶); Sun et al. (2011 ▶).

Experimental

Crystal data

[Cu(C8H5NO4S)(H2O)]·3H2O M = 346.82 Monoclinic, a = 9.940 (7) Å b = 16.639 (9) Å c = 7.876 (4) Å β = 96.28 (5)° V = 1294.8 (13) Å3 Z = 4 Mo Kα radiation μ = 1.88 mm−1 T = 296 K 0.25 × 0.09 × 0.06 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.812, T max = 0.892 20324 measured reflections 2973 independent reflections 2331 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.085 S = 1.04 2973 reflections 172 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813009604/xu5692sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813009604/xu5692Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813009604/xu5692Isup3.cdx Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C8H5NO4S)(H2O)]·3H2OF(000) = 708
Mr = 346.82Dx = 1.779 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3501 reflections
a = 9.940 (7) Åθ = 2.1–27.6°
b = 16.639 (9) ŵ = 1.88 mm1
c = 7.876 (4) ÅT = 296 K
β = 96.28 (5)°Plate, blue
V = 1294.8 (13) Å30.25 × 0.09 × 0.06 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer2973 independent reflections
Radiation source: fine-focus sealed tube2331 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.054
ω scansθmax = 27.6°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −11→12
Tmin = 0.812, Tmax = 0.892k = −21→21
20324 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.085H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0455P)2 + 0.2317P] where P = (Fo2 + 2Fc2)/3
2973 reflections(Δ/σ)max = 0.001
172 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu11.10928 (3)0.455426 (15)0.48878 (4)0.02469 (11)
S10.96122 (7)0.21713 (3)0.44052 (8)0.03032 (16)
O10.97500 (18)0.37850 (10)0.3866 (2)0.0338 (4)
O1W1.2932 (2)0.39085 (12)0.4498 (3)0.0473 (5)
H1WA1.27870.34690.40370.057*
H1WB1.34190.41410.38450.057*
O20.7893 (2)0.45444 (10)0.3972 (3)0.0369 (4)
O31.0779 (2)0.08898 (11)0.2128 (2)0.0374 (4)
O40.89346 (19)0.01319 (10)0.2319 (2)0.0328 (4)
N10.7301 (2)0.17934 (12)0.2526 (3)0.0341 (5)
C10.5606 (3)0.27286 (16)0.1366 (4)0.0398 (7)
H1A0.47680.28170.07450.048*
C20.7636 (3)0.32137 (14)0.2965 (3)0.0267 (5)
C30.6384 (3)0.33602 (16)0.2060 (4)0.0348 (6)
H3A0.60680.38850.19190.042*
C40.6114 (3)0.19624 (16)0.1627 (4)0.0393 (7)
H4A0.56000.15360.11470.047*
C50.8059 (3)0.24081 (14)0.3179 (3)0.0260 (5)
C60.8489 (3)0.38985 (13)0.3664 (3)0.0268 (5)
C70.9514 (3)0.10887 (14)0.4500 (3)0.0319 (6)
H7A1.01780.08970.54030.038*
H7B0.86260.09380.47940.038*
C80.9757 (3)0.06765 (14)0.2838 (3)0.0286 (5)
O2W0.6123 (3)−0.00071 (16)0.2997 (4)0.0759 (8)
H2WA0.6385−0.02440.39070.091*
H2WB0.67740.02990.28860.091*
O3W0.3765 (3)0.07734 (18)0.3764 (4)0.0831 (9)
H3WA0.30480.05890.33290.100*
H3WB0.43640.04910.34240.100*
O4W0.2538 (3)0.24845 (18)0.2749 (5)0.1001 (11)
H4WA0.27660.22800.18810.120*
H4WB0.16990.23620.26910.120*
U11U22U33U12U13U23
Cu10.02945 (19)0.01710 (15)0.02766 (18)0.00031 (11)0.00377 (12)0.00057 (11)
S10.0364 (4)0.0231 (3)0.0307 (4)0.0012 (3)0.0001 (3)−0.0052 (2)
O10.0335 (11)0.0208 (8)0.0472 (12)−0.0032 (7)0.0043 (9)−0.0036 (7)
O1W0.0429 (12)0.0403 (11)0.0603 (14)0.0085 (9)0.0123 (10)−0.0024 (9)
O20.0382 (11)0.0238 (9)0.0469 (12)0.0011 (8)−0.0026 (9)−0.0080 (8)
O30.0434 (12)0.0363 (10)0.0337 (10)−0.0079 (9)0.0093 (9)−0.0118 (8)
O40.0412 (11)0.0248 (8)0.0330 (10)−0.0010 (8)0.0066 (8)−0.0051 (7)
N10.0417 (14)0.0242 (10)0.0357 (13)−0.0065 (9)0.0016 (10)−0.0041 (9)
C10.0335 (16)0.0393 (15)0.0444 (17)−0.0048 (12)−0.0052 (13)−0.0017 (12)
C20.0320 (14)0.0234 (12)0.0254 (13)−0.0021 (10)0.0056 (10)−0.0014 (9)
C30.0357 (16)0.0275 (13)0.0410 (16)−0.0008 (11)0.0027 (12)0.0011 (11)
C40.0424 (17)0.0338 (14)0.0403 (16)−0.0121 (12)−0.0012 (13)−0.0045 (12)
C50.0308 (14)0.0242 (11)0.0238 (12)−0.0016 (10)0.0066 (10)−0.0016 (9)
C60.0398 (16)0.0188 (11)0.0221 (12)−0.0042 (10)0.0039 (11)0.0023 (9)
C70.0499 (17)0.0225 (12)0.0234 (13)0.0016 (11)0.0039 (12)−0.0010 (9)
C80.0388 (15)0.0202 (11)0.0263 (13)0.0065 (10)0.0015 (11)−0.0008 (9)
O2W0.0679 (18)0.0680 (17)0.097 (2)−0.0153 (14)0.0337 (15)−0.0023 (15)
O3W0.0590 (18)0.0867 (19)0.098 (2)−0.0033 (15)−0.0178 (15)−0.0172 (17)
O4W0.069 (2)0.090 (2)0.150 (3)−0.0265 (17)0.048 (2)−0.055 (2)
Cu1—O11.958 (2)N1—C51.340 (3)
Cu1—O2i1.9682 (19)C1—C41.379 (4)
Cu1—O3ii1.9687 (19)C1—C31.382 (4)
Cu1—O4iii1.9836 (19)C1—H1A0.9300
Cu1—O1W2.171 (2)C2—C31.386 (4)
Cu1—Cu1i2.6524 (15)C2—C51.410 (3)
S1—C51.773 (3)C2—C61.489 (3)
S1—C71.806 (3)C3—H3A0.9300
O1—C61.261 (3)C4—H4A0.9300
O1W—H1WA0.8228C7—C81.521 (3)
O1W—H1WB0.8384C7—H7A0.9700
O2—C61.263 (3)C7—H7B0.9700
O2—Cu1i1.9682 (19)O2W—H2WA0.8345
O3—C81.263 (3)O2W—H2WB0.8359
O3—Cu1iv1.9687 (19)O3W—H3WA0.8165
O4—C81.258 (3)O3W—H3WB0.8253
O4—Cu1v1.9836 (19)O4W—H4WA0.8176
N1—C41.337 (4)O4W—H4WB0.8547
O1—Cu1—O2i167.93 (8)C3—C2—C5117.9 (2)
O1—Cu1—O3ii87.44 (9)C3—C2—C6119.9 (2)
O2i—Cu1—O3ii90.03 (9)C5—C2—C6122.2 (2)
O1—Cu1—O4iii90.75 (9)C1—C3—C2120.1 (2)
O2i—Cu1—O4iii89.31 (9)C1—C3—H3A119.9
O3ii—Cu1—O4iii168.14 (8)C2—C3—H3A119.9
O1—Cu1—O1W99.49 (9)N1—C4—C1124.1 (3)
O2i—Cu1—O1W92.56 (9)N1—C4—H4A117.9
O3ii—Cu1—O1W99.18 (9)C1—C4—H4A117.9
O4iii—Cu1—O1W92.69 (9)N1—C5—C2122.1 (2)
O1—Cu1—Cu1i82.33 (7)N1—C5—S1117.35 (19)
O2i—Cu1—Cu1i85.74 (7)C2—C5—S1120.48 (19)
O3ii—Cu1—Cu1i86.50 (7)O1—C6—O2125.7 (2)
O4iii—Cu1—Cu1i81.64 (7)O1—C6—C2116.7 (2)
O1W—Cu1—Cu1i174.09 (6)O2—C6—C2117.5 (2)
C5—S1—C7101.32 (12)C8—C7—S1113.56 (17)
C6—O1—Cu1125.29 (16)C8—C7—H7A108.9
Cu1—O1W—H1WA113.2S1—C7—H7A108.9
Cu1—O1W—H1WB114.3C8—C7—H7B108.9
H1WA—O1W—H1WB103.0S1—C7—H7B108.9
C6—O2—Cu1i120.56 (18)H7A—C7—H7B107.7
C8—O3—Cu1iv120.36 (16)O4—C8—O3125.7 (2)
C8—O4—Cu1v125.43 (17)O4—C8—C7116.5 (2)
C4—N1—C5118.0 (2)O3—C8—C7117.8 (2)
C4—C1—C3117.6 (3)H2WA—O2W—H2WB101.8
C4—C1—H1A121.2H3WA—O3W—H3WB106.2
C3—C1—H1A121.2H4WA—O4W—H4WB102.4
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O4Wvi0.821.932.747 (4)174
O1W—H1WB···O2Wiii0.842.112.899 (4)156
O2W—H2WA···O3Wvii0.832.052.843 (5)157
O2W—H2WB···O40.842.262.911 (4)135
O2W—H2WB···N10.842.563.253 (4)141
O3W—H3WA···O3viii0.822.403.110 (4)146
O3W—H3WB···O2W0.832.002.803 (5)165
O4W—H4WB···S1viii0.852.623.356 (4)146
Table 1

Selected bond lengths (Å)

Cu1—O11.958 (2)
Cu1—O2i 1.9682 (19)
Cu1—O3ii 1.9687 (19)
Cu1—O4iii 1.9836 (19)
Cu1—O1W 2.171 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H1WA⋯O4W iv 0.821.932.747 (4)174
O1W—H1WB⋯O2W iii 0.842.112.899 (4)156
O2W—H2WA⋯O3W v 0.832.052.843 (5)157
O2W—H2WB⋯O40.842.262.911 (4)135
O2W—H2WB⋯N10.842.563.253 (4)141
O3W—H3WA⋯O3vi 0.822.403.110 (4)146
O3W—H3WB⋯O2W 0.832.002.803 (5)165
O4W—H4WB⋯S1vi 0.852.623.356 (4)146

Symmetry codes: (iii) ; (iv) ; (v) ; (vi) .

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