Literature DB >> 21579199

2-(4-Chloro-benzo-yl)-1-(diamino-methyl-ene)hydrazinium chloride monohydrate.

V M Chernyshev, A V Chernysheva, E V Tarasova, V V Ivanov, Z A Starikova.   

Abstract

In the cation of the title compound, C(8)H(10)ClN(4)O(+)·Cl(-)·H(2)O, the guanidinium group is planar (maximum deviation = 0.0001 Å) and nearly perpendicular to carboxamide group, making a dihedral angle of 87.0 (3)°. The N atoms of the guanidine fragment have a planar trigonal configuration and the N atom of the carboxamide group adopts a pyramidal configuration. In the crystal structure, inter-molecular N-H⋯O, N-H⋯Cl and O-H⋯Cl hydrogen bonds link the cations, anions and water mol-ecules into layers parallel to the bc plane.

Entities:  

Year:  2010        PMID: 21579199      PMCID: PMC2979199          DOI: 10.1107/S1600536810014108

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Kolev & Petrova (2003 ▶). For amino­guanidine structures, see: Bharatam et al. (2004 ▶); Koskinen et al. (1997 ▶); Hammerl et al. (2005 ▶); Macháčková et al. (2007 ▶); Murugavel et al. (2009a ▶,b ▶). For the preparation of guanyl hydrazides, see: Grinstein & Chipen (1961 ▶). For the application of guanyl hydrazides in the synthesis of 3-substituted 5-amino-1,2,4-triazoles, see: Dolzhenko et al. (2009 ▶).

Experimental

Crystal data

C8H10ClN4OCl−·H2O M = 267.12 Monoclinic, a = 19.349 (4) Å b = 4.3563 (9) Å c = 14.516 (3) Å β = 102.360 (3)° V = 1195.2 (4) Å3 Z = 4 Mo Kα radiation μ = 0.54 mm−1 T = 100 K 0.40 × 0.30 × 0.15 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.814, T max = 0.924 9756 measured reflections 2330 independent reflections 2099 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.142 S = 1.17 2330 reflections 145 parameters H-atom parameters constrained Δρmax = 0.79 e Å−3 Δρmin = −0.41 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶), publCIF (Westrip, 2010 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810014108/cv2710sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810014108/cv2710Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H10ClN4O+·Cl·H2OF(000) = 552
Mr = 267.12Dx = 1.484 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 195 reflections
a = 19.349 (4) Åθ = 3–25°
b = 4.3563 (9) ŵ = 0.54 mm1
c = 14.516 (3) ÅT = 100 K
β = 102.360 (3)°Plate, colourless
V = 1195.2 (4) Å30.40 × 0.30 × 0.15 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2330 independent reflections
Radiation source: fine-focus sealed tube2099 reflections with I > 2σ(I)
graphiteRint = 0.034
ω scansθmax = 26.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −23→23
Tmin = 0.814, Tmax = 0.924k = −5→5
9756 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: difference Fourier map
wR(F2) = 0.142H-atom parameters constrained
S = 1.17w = 1/[σ2(Fo2) + (0.P)2 + 7.6548P] where P = (Fo2 + 2Fc2)/3
2330 reflections(Δ/σ)max < 0.001
145 parametersΔρmax = 0.79 e Å3
0 restraintsΔρmin = −0.41 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.04674 (6)0.7630 (4)0.43499 (8)0.0378 (3)
Cl20.61291 (5)0.8080 (2)0.16436 (7)0.0176 (2)
O10.23490 (15)0.4393 (7)0.1141 (2)0.0206 (6)
N10.30500 (17)0.8203 (8)0.1875 (2)0.0167 (7)
H10.31680.94100.23870.020*
N20.36010 (18)0.7335 (8)0.1466 (2)0.0168 (7)
H20.39040.58130.16930.020*
N30.32072 (18)1.0675 (8)0.0221 (2)0.0170 (7)
H3B0.29011.15790.05240.020*
H3A0.32701.1318−0.03440.020*
N40.41145 (18)0.7296 (8)0.0186 (2)0.0191 (8)
H4B0.43900.56900.04160.023*
H4A0.41560.8225−0.03540.023*
C10.3636 (2)0.8462 (9)0.0616 (3)0.0151 (8)
C20.2468 (2)0.6400 (10)0.1752 (3)0.0167 (8)
C30.1974 (2)0.6938 (10)0.2392 (3)0.0189 (9)
C40.1303 (2)0.5694 (12)0.2146 (3)0.0255 (10)
H40.11660.46780.15730.031*
C50.0832 (2)0.5933 (12)0.2738 (3)0.0288 (11)
H50.03790.51120.25640.035*
C60.1048 (2)0.7415 (12)0.3591 (3)0.0248 (10)
C70.1710 (2)0.8685 (12)0.3853 (3)0.0294 (11)
H70.18430.97060.44260.035*
C80.2176 (2)0.8438 (12)0.3260 (3)0.0253 (10)
H80.26270.92730.34370.030*
O1W0.48997 (16)0.3347 (7)0.1577 (2)0.0256 (7)
H1W0.50360.14840.16250.038*
H2W0.52830.43820.16770.038*
U11U22U33U12U13U23
Cl10.0308 (6)0.0615 (9)0.0261 (6)0.0026 (6)0.0171 (5)−0.0009 (6)
Cl20.0268 (5)0.0130 (4)0.0146 (5)0.0001 (4)0.0079 (4)0.0004 (4)
O10.0231 (15)0.0225 (16)0.0159 (14)0.0020 (13)0.0038 (11)−0.0030 (13)
N10.0226 (17)0.0160 (17)0.0134 (16)0.0018 (15)0.0078 (13)−0.0013 (14)
N20.0253 (18)0.0142 (17)0.0126 (16)0.0030 (14)0.0079 (13)0.0017 (13)
N30.0267 (18)0.0169 (17)0.0094 (15)0.0041 (15)0.0083 (13)0.0026 (14)
N40.0297 (19)0.0139 (17)0.0172 (17)0.0031 (15)0.0125 (14)0.0020 (14)
C10.022 (2)0.0111 (19)0.0118 (18)−0.0043 (16)0.0037 (15)−0.0046 (15)
C20.023 (2)0.017 (2)0.0103 (18)0.0039 (17)0.0025 (15)0.0039 (16)
C30.023 (2)0.022 (2)0.0126 (19)0.0048 (18)0.0052 (16)0.0013 (17)
C40.024 (2)0.035 (3)0.017 (2)0.000 (2)0.0056 (17)−0.011 (2)
C50.022 (2)0.038 (3)0.029 (2)−0.002 (2)0.0102 (18)−0.002 (2)
C60.024 (2)0.037 (3)0.016 (2)0.007 (2)0.0109 (17)0.0046 (19)
C70.032 (2)0.042 (3)0.016 (2)0.001 (2)0.0092 (18)−0.006 (2)
C80.024 (2)0.037 (3)0.016 (2)−0.004 (2)0.0059 (17)−0.0025 (19)
O1W0.0256 (16)0.0157 (15)0.0359 (18)0.0004 (13)0.0076 (13)0.0033 (14)
Cl1—C61.736 (4)C2—C31.488 (5)
O1—C21.232 (5)C3—C41.381 (6)
N1—C21.352 (5)C3—C81.398 (6)
N1—N21.379 (4)C4—C51.384 (6)
N1—H10.8999C4—H40.9300
N2—C11.343 (5)C5—C61.380 (7)
N2—H20.9001C5—H50.9300
N3—C11.321 (5)C6—C71.373 (7)
N3—H3B0.9002C7—C81.377 (6)
N3—H3A0.9000C7—H70.9300
N4—C11.324 (5)C8—H80.9300
N4—H4B0.8999O1W—H1W0.8517
N4—H4A0.9002O1W—H2W0.8542
C2—N1—N2118.8 (3)C4—C3—C2118.1 (4)
C2—N1—H1120.3C8—C3—C2122.8 (4)
N2—N1—H1115.6C3—C4—C5121.2 (4)
C1—N2—N1119.4 (3)C3—C4—H4119.4
C1—N2—H2116.6C5—C4—H4119.4
N1—N2—H2123.2C6—C5—C4118.6 (4)
C1—N3—H3B121.8C6—C5—H5120.7
C1—N3—H3A115.4C4—C5—H5120.7
H3B—N3—H3A122.7C7—C6—C5121.5 (4)
C1—N4—H4B122.8C7—C6—Cl1119.7 (3)
C1—N4—H4A116.1C5—C6—Cl1118.8 (4)
H4B—N4—H4A121.1C6—C7—C8119.5 (4)
N3—C1—N4120.9 (4)C6—C7—H7120.2
N3—C1—N2121.0 (4)C8—C7—H7120.2
N4—C1—N2118.2 (4)C7—C8—C3120.3 (4)
O1—C2—N1122.0 (4)C7—C8—H8119.8
O1—C2—C3121.0 (4)C3—C8—H8119.8
N1—C2—C3117.1 (4)H1W—O1W—H2W104.3
C4—C3—C8118.9 (4)
C2—N1—N2—C194.5 (4)C2—C3—C4—C5175.8 (4)
N1—N2—C1—N38.8 (6)C3—C4—C5—C6−0.8 (8)
N1—N2—C1—N4−171.3 (3)C4—C5—C6—C71.1 (8)
N2—N1—C2—O1−15.4 (6)C4—C5—C6—Cl1−178.3 (4)
N2—N1—C2—C3164.5 (3)C5—C6—C7—C8−1.1 (8)
O1—C2—C3—C4−15.6 (6)Cl1—C6—C7—C8178.3 (4)
N1—C2—C3—C4164.5 (4)C6—C7—C8—C30.8 (8)
O1—C2—C3—C8159.5 (4)C4—C3—C8—C7−0.5 (7)
N1—C2—C3—C8−20.5 (6)C2—C3—C8—C7−175.5 (4)
C8—C3—C4—C50.5 (7)
D—H···AD—HH···AD···AD—H···A
N1—H1···Cl2i0.902.363.194 (4)154
N2—H2···O1W0.902.243.031 (4)146
N2—H2···Cl2ii0.902.713.260 (4)121
N3—H3B···O1iii0.901.962.848 (3)167
N3—H3A···Cl2iv0.902.433.280 (4)157
N4—H4B···O1W0.902.042.834 (4)147
N4—H4A···Cl2iv0.902.443.286 (4)156
O1W—H1W···Cl2v0.852.583.292 (4)142
O1W—H2W···Cl20.852.303.134 (4)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯Cl2i0.902.363.194 (4)154
N2—H2⋯O1W0.902.243.031 (4)146
N2—H2⋯Cl2ii0.902.713.260 (4)121
N3—H3B⋯O1iii0.901.962.848 (3)167
N3—H3A⋯Cl2iv0.902.433.280 (4)157
N4—H4B⋯O1W0.902.042.834 (4)147
N4—H4A⋯Cl2iv0.902.443.286 (4)156
O1W—H1W⋯Cl2v0.852.583.292 (4)142
O1W—H2W⋯Cl20.852.303.134 (4)164

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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1.  A short history of SHELX.

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2.  Amino-guanidinium hydrogen fumarate.

Authors:  Swaminathan Murugavel; Gnanavelu Ganesh; Arunachalathevar Subbiah Pandi; Subbiah Govindarajan; Rajendran Selvakumar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-18

3.  Amino-guanidinium hydrogen succinate.

Authors:  S Murugavel; P S Kannan; A Subbiah Pandi; S Govindarajan; R Selvakumar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-04

4.  Structure validation in chemical crystallography.

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  4 in total

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