Literature DB >> 21582207

Amino-guanidinium hydrogen fumarate.

Swaminathan Murugavel, Gnanavelu Ganesh, Arunachalathevar Subbiah Pandi, Subbiah Govindarajan, Rajendran Selvakumar.   

Abstract

The title compound, CH(7)N(4) (+)·C(4)H(3)O(4) (-), is a molecular salt in which the amino-guanidinium cations and fumarate monoanions are close to planar, with maximum deviations of 0.011 (1) and 0.177 (1) Å, respectively. The crystal packing is stabilized by inter-molecular N-H⋯O and O-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582207      PMCID: PMC2968477          DOI: 10.1107/S1600536809004553

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Adams (1977 ▶); Akella & Keszler (1994 ▶); Mullen & Hellner (1978 ▶). For biological applications, see: Makita et al. (1995 ▶); Brownlee et al. (1986 ▶).

Experimental

Crystal data

CH7N4C4H3O4 M = 190.17 Monoclinic, a = 6.3869 (3) Å b = 19.8731 (10) Å c = 7.0482 (4) Å β = 114.688 (3)° V = 812.84 (8) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.26 × 0.15 × 0.15 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.966, T max = 0.976 10713 measured reflections 2340 independent reflections 1824 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.132 S = 1.04 2340 reflections 146 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809004553/wm2220sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809004553/wm2220Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
CH7N4+·C4H3O4F(000) = 400
Mr = 190.17Dx = 1.554 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1824 reflections
a = 6.3869 (3) Åθ = 2–29.9°
b = 19.8731 (10) ŵ = 0.13 mm1
c = 7.0482 (4) ÅT = 293 K
β = 114.688 (3)°Block, colourless
V = 812.84 (8) Å30.26 × 0.15 × 0.15 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2340 independent reflections
Radiation source: fine-focus sealed tube1824 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 10.0 pixels mm-1θmax = 29.9°, θmin = 2.1°
ω scansh = −8→7
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −24→27
Tmin = 0.966, Tmax = 0.976l = −9→9
10713 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0756P)2 + 0.1408P] where P = (Fo2 + 2Fc2)/3
2340 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
H11B0.243 (3)0.4484 (12)0.254 (3)0.057 (5)*
H120.573 (3)0.3932 (11)0.302 (3)0.056 (5)*
H13A0.861 (4)0.3941 (12)0.204 (3)0.072 (6)*
C11.12336 (19)0.84396 (5)0.68336 (19)0.0281 (3)
C20.9984 (2)0.78049 (5)0.68320 (19)0.0274 (2)
H21.07380.73960.69530.033*
C30.7863 (2)0.78034 (6)0.6666 (2)0.0292 (3)
H30.71250.82120.65950.035*
C40.6603 (2)0.71704 (5)0.65888 (19)0.0279 (3)
O61.04931 (17)0.89803 (5)0.71551 (19)0.0466 (3)
O71.30209 (15)0.83829 (4)0.64654 (17)0.0362 (2)
O80.45191 (15)0.72255 (4)0.64769 (17)0.0374 (2)
H80.41890.76250.64650.056*
O90.74557 (17)0.66199 (4)0.66416 (19)0.0434 (3)
H10A0.521 (3)0.5783 (9)0.214 (3)0.046 (5)*
H10B0.747 (4)0.5370 (10)0.245 (3)0.057 (5)*
H11A0.221 (3)0.5225 (10)0.224 (3)0.053 (5)*
C50.5133 (2)0.48405 (6)0.25398 (18)0.0277 (3)
N100.6094 (2)0.54110 (5)0.23653 (19)0.0350 (3)
N110.3028 (2)0.48299 (6)0.2428 (2)0.0412 (3)
N120.6265 (2)0.42625 (5)0.2812 (2)0.0361 (3)
N130.8519 (2)0.42556 (6)0.2974 (2)0.0431 (3)
H13B0.935 (4)0.4125 (10)0.424 (3)0.061 (6)*
U11U22U33U12U13U23
C10.0233 (5)0.0217 (5)0.0413 (6)−0.0015 (4)0.0153 (5)0.0003 (4)
C20.0253 (5)0.0198 (5)0.0400 (6)−0.0004 (4)0.0166 (5)0.0010 (4)
C30.0270 (6)0.0179 (5)0.0477 (7)−0.0010 (4)0.0206 (5)−0.0004 (4)
C40.0264 (5)0.0200 (5)0.0412 (6)−0.0018 (4)0.0180 (5)0.0000 (4)
O60.0395 (5)0.0226 (4)0.0891 (8)−0.0035 (4)0.0382 (6)−0.0077 (5)
O70.0291 (4)0.0264 (4)0.0620 (6)−0.0027 (3)0.0279 (4)0.0003 (4)
O80.0280 (4)0.0228 (4)0.0683 (7)−0.0027 (3)0.0272 (4)−0.0004 (4)
O90.0390 (5)0.0196 (4)0.0796 (7)0.0023 (3)0.0328 (5)0.0019 (4)
C50.0301 (6)0.0208 (5)0.0345 (6)0.0007 (4)0.0158 (5)0.0002 (4)
N100.0341 (6)0.0206 (5)0.0553 (7)−0.0007 (4)0.0238 (5)0.0025 (4)
N110.0350 (6)0.0254 (5)0.0713 (9)0.0000 (5)0.0304 (6)0.0024 (5)
N120.0353 (6)0.0193 (5)0.0599 (7)0.0021 (4)0.0260 (5)0.0052 (4)
N130.0345 (6)0.0348 (6)0.0638 (9)0.0076 (5)0.0244 (6)0.0025 (6)
C1—O61.2325 (14)C5—N101.3190 (15)
C1—O71.2770 (14)C5—N121.3278 (15)
C1—C21.4922 (15)N10—H10A0.905 (18)
C2—C31.3105 (16)N10—H10B0.86 (2)
C2—H20.9300N11—H11B0.80 (2)
C3—C41.4820 (15)N11—H11A0.92 (2)
C3—H30.9300N12—N131.3960 (16)
C4—O91.2159 (14)N12—H120.78 (2)
C4—O81.3044 (14)N13—H13A0.93 (2)
O8—H80.8200N13—H13B0.87 (2)
C5—N111.3136 (17)
O6—C1—O7123.96 (10)N11—C5—N12118.46 (11)
O6—C1—C2119.40 (10)N10—C5—N12120.71 (11)
O7—C1—C2116.64 (10)C5—N10—H10A115.9 (12)
C3—C2—C1122.32 (10)C5—N10—H10B114.5 (14)
C3—C2—H2118.8H10A—N10—H10B129.6 (19)
C1—C2—H2118.8C5—N11—H11B121.4 (15)
C2—C3—C4122.04 (10)C5—N11—H11A120.0 (12)
C2—C3—H3119.0H11B—N11—H11A119 (2)
C4—C3—H3119.0C5—N12—N13120.06 (11)
O9—C4—O8120.67 (10)C5—N12—H12120.1 (15)
O9—C4—C3122.22 (10)N13—N12—H12119.5 (15)
O8—C4—C3117.11 (10)N12—N13—H13A108.3 (15)
C4—O8—H8109.5N12—N13—H13B104.9 (14)
N11—C5—N10120.83 (11)H13A—N13—H13B109.7 (19)
O6—C1—C2—C316.50 (19)C2—C3—C4—O8178.28 (11)
O7—C1—C2—C3−162.59 (12)N11—C5—N12—N13−178.90 (13)
C1—C2—C3—C4177.74 (11)N10—C5—N12—N131.8 (2)
C2—C3—C4—O9−1.2 (2)
D—H···AD—HH···AD···AD—H···A
O8—H8···O7i0.821.682.489 (1)168
N10—H10A···O7ii0.91 (2)2.09 (2)2.993 (1)177 (2)
N11—H11A···O6ii0.92 (2)1.91 (2)2.827 (2)173 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O8—H8⋯O7i0.821.682.489 (1)168
N10—H10A⋯O7ii0.91 (2)2.09 (2)2.993 (1)177 (2)
N11—H11A⋯O6ii0.92 (2)1.91 (2)2.827 (2)173 (2)

Symmetry codes: (i) ; (ii) .

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