Literature DB >> 21582126

Amino-guanidinium hydrogen succinate.

S Murugavel, P S Kannan, A Subbiah Pandi, S Govindarajan, R Selvakumar.   

Abstract

The title compound, CH(7)N(4) (+)·C(4)H(5)O(4) (-), is a molecular salt containing discrete amino-guanidinium and succinate ions. The amino-guanidinium cation is nearly planar, with a maximum deviation of 0.035 (1) Å. The dihedral angle between the amino-guanidinium cation and the succinate anion is 3.35 (6)°. The crystal packing exhibits inter-molecular N-H⋯O and O-H⋯·O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582126      PMCID: PMC2968605          DOI: 10.1107/S1600536809003626

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Adams (1977 ▶); Mullen & Hellner (1978 ▶); Akella & Keszler (1994 ▶). For biological applications of amino­guanadine, see: Makita et al. (1995 ▶); Brownlee et al. (1986 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

CH7N4C4H5O4 M = 192.19 Monoclinic, a = 15.071 (5) Å b = 6.565 (2) Å c = 18.152 (5) Å β = 109.733 (5)° V = 1690.5 (9) Å3 Z = 8 Mo Kα radiation μ = 0.13 mm−1 T = 293 (2) K 0.25 × 0.16 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.968, T max = 0.980 11302 measured reflections 2773 independent reflections 2107 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.135 S = 1.05 2773 reflections 146 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809003626/lx2087sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003626/lx2087Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
CH7N4+·C4H5O4F(000) = 816
Mr = 192.19Dx = 1.510 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71069 Å
Hall symbol: -C 2ycCell parameters from 2773 reflections
a = 15.071 (5) Åθ = 2.4–31.4°
b = 6.565 (2) ŵ = 0.13 mm1
c = 18.152 (5) ÅT = 293 K
β = 109.733 (5)°Block, colourless
V = 1690.5 (9) Å30.25 × 0.16 × 0.16 mm
Z = 8
Bruker APEXII CCD diffractometer2773 independent reflections
Radiation source: fine-focus sealed tube2107 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 10.0 pixels mm-1θmax = 31.4°, θmin = 2.4°
ω scansh = −22→21
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −9→9
Tmin = 0.968, Tmax = 0.980l = −25→26
11302 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0746P)2 + 0.4733P] where P = (Fo2 + 2Fc2)/3
2773 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
H12A0.1707 (12)1.015 (3)0.2850 (10)0.053 (5)*
H12B0.1337 (11)0.802 (3)0.2512 (9)0.043 (4)*
H13A0.3357 (16)1.149 (3)0.4112 (13)0.090 (7)*
H13B0.2620 (13)1.136 (3)0.4466 (12)0.073 (6)*
H10A0.1961 (13)0.509 (3)0.3165 (11)0.055 (5)*
H10B0.2701 (11)0.531 (2)0.3943 (10)0.050 (4)*
H110.3229 (11)0.826 (2)0.4490 (9)0.047 (4)*
C10.54873 (7)0.08831 (15)0.67511 (6)0.0289 (2)
C20.47896 (7)0.20438 (15)0.61002 (6)0.0306 (2)
H2A0.41580.16890.60830.037*
H2B0.48530.16280.56070.037*
C30.49064 (7)0.43218 (15)0.61797 (6)0.0281 (2)
H3A0.55420.46760.62090.034*
H3B0.48260.47440.66660.034*
C40.42163 (7)0.54741 (15)0.55112 (6)0.0291 (2)
C50.22849 (7)0.78408 (16)0.34760 (6)0.0282 (2)
N100.23172 (8)0.58414 (15)0.35140 (6)0.0381 (3)
N110.28683 (7)0.88965 (14)0.40661 (6)0.0368 (2)
N120.16935 (7)0.87957 (16)0.28669 (6)0.0379 (3)
N130.27963 (9)1.10237 (16)0.40542 (7)0.0446 (3)
O60.54679 (6)−0.10939 (12)0.66765 (5)0.0436 (2)
H60.5057−0.14140.62650.065*
O70.60494 (6)0.17027 (12)0.73220 (5)0.0386 (2)
O80.42768 (6)0.74200 (11)0.55212 (5)0.0395 (2)
O90.36190 (7)0.45581 (13)0.49819 (5)0.0489 (3)
U11U22U33U12U13U23
C10.0314 (5)0.0199 (4)0.0270 (5)−0.0002 (4)−0.0011 (4)0.0023 (3)
C20.0343 (5)0.0190 (4)0.0269 (5)0.0002 (4)−0.0052 (4)0.0028 (3)
C30.0326 (5)0.0185 (4)0.0239 (4)0.0009 (3)−0.0028 (4)0.0012 (3)
C40.0355 (5)0.0195 (4)0.0239 (4)0.0026 (4)−0.0012 (4)0.0013 (3)
C50.0296 (5)0.0241 (4)0.0242 (4)0.0005 (4)0.0005 (4)−0.0018 (3)
N100.0454 (6)0.0221 (4)0.0325 (5)0.0001 (4)−0.0058 (4)−0.0020 (4)
N110.0443 (5)0.0223 (4)0.0285 (4)0.0002 (4)−0.0076 (4)−0.0024 (3)
N120.0426 (5)0.0261 (5)0.0294 (5)0.0009 (4)−0.0082 (4)0.0004 (4)
N130.0525 (7)0.0224 (4)0.0443 (6)−0.0012 (4)−0.0030 (5)−0.0061 (4)
O60.0503 (5)0.0181 (3)0.0396 (5)0.0004 (3)−0.0147 (4)0.0026 (3)
O70.0420 (5)0.0250 (4)0.0317 (4)−0.0003 (3)−0.0097 (3)0.0007 (3)
O80.0485 (5)0.0181 (3)0.0347 (4)0.0009 (3)−0.0085 (3)0.0027 (3)
O90.0592 (6)0.0258 (4)0.0348 (4)0.0000 (4)−0.0195 (4)−0.0018 (3)
C1—O71.2200 (13)C5—N121.3207 (13)
C1—O61.3043 (13)C5—N111.3285 (13)
C1—C21.4978 (13)N10—H10A0.840 (19)
C2—C31.5071 (15)N10—H10B0.871 (17)
C2—H2A0.9700N11—N131.4003 (15)
C2—H2B0.9700N11—H110.884 (17)
C3—C41.5080 (13)N12—H12A0.891 (19)
C3—H3A0.9700N12—H12B0.852 (16)
C3—H3B0.9700N13—H13A0.87 (2)
C4—O91.2293 (13)N13—H13B0.90 (2)
C4—O81.2804 (12)O6—H60.8200
C5—N101.3144 (15)
O7—C1—O6120.79 (9)O8—C4—C3117.56 (9)
O7—C1—C2123.16 (9)N10—C5—N12121.37 (10)
O6—C1—C2116.06 (8)N10—C5—N11118.42 (10)
C1—C2—C3113.65 (8)N12—C5—N11120.21 (10)
C1—C2—H2A108.8C5—N10—H10A123.2 (12)
C3—C2—H2A108.8C5—N10—H10B116.7 (11)
C1—C2—H2B108.8H10A—N10—H10B119.9 (16)
C3—C2—H2B108.8C5—N11—N13118.76 (9)
H2A—C2—H2B107.7C5—N11—H11120.0 (10)
C2—C3—C4113.22 (8)N13—N11—H11120.6 (10)
C2—C3—H3A108.9C5—N12—H12A119.1 (11)
C4—C3—H3A108.9C5—N12—H12B115.2 (11)
C2—C3—H3B108.9H12A—N12—H12B125.7 (16)
C4—C3—H3B108.9N11—N13—H13A106.3 (15)
H3A—C3—H3B107.7N11—N13—H13B106.1 (13)
O9—C4—O8121.94 (9)H13A—N13—H13B111 (2)
O9—C4—C3120.50 (9)C1—O6—H6109.5
O7—C1—C2—C35.34 (16)C2—C3—C4—O8−178.55 (10)
O6—C1—C2—C3−174.44 (10)N10—C5—N11—N13−175.87 (12)
C1—C2—C3—C4178.57 (9)N12—C5—N11—N134.49 (17)
C2—C3—C4—O91.74 (16)
D—H···AD—HH···AD···AD—H···A
N10—H10B···O90.87 (2)1.99 (2)2.851 (1)171 (2)
N11—H11···O80.88 (2)2.07 (2)2.939 (1)166 (1)
N12—H12B···O6i0.85 (2)2.07 (2)2.921 (1)178 (2)
N10—H10A···O7i0.84 (2)2.05 (2)2.886 (1)178 (2)
O6—H6···O8ii0.821.652.456 (1)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N10—H10B⋯O90.87 (2)1.99 (2)2.851 (1)171 (2)
N11—H11⋯O80.88 (2)2.07 (2)2.939 (1)166 (1)
N12—H12B⋯O6i0.85 (2)2.07 (2)2.921 (1)178 (2)
N10—H10A⋯O7i0.84 (2)2.05 (2)2.886 (1)178 (2)
O6—H6⋯O8ii0.821.652.456 (1)167

Symmetry codes: (i) ; (ii) .

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