| Literature DB >> 21582126 |
S Murugavel, P S Kannan, A Subbiah Pandi, S Govindarajan, R Selvakumar.
Abstract
The title compound, CH(7)N(4) (+)·C(4)H(5)O(4) (-), is a molecular salt containing discrete amino-guanidinium and succinate ions. The amino-guanidinium cation is nearly planar, with a maximum deviation of 0.035 (1) Å. The dihedral angle between the amino-guanidinium cation and the succinate anion is 3.35 (6)°. The crystal packing exhibits inter-molecular N-H⋯O and O-H⋯·O hydrogen bonds.Entities:
Year: 2009 PMID: 21582126 PMCID: PMC2968605 DOI: 10.1107/S1600536809003626
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| CH7N4+·C4H5O4− | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2773 reflections |
| θ = 2.4–31.4° | |
| µ = 0.13 mm−1 | |
| β = 109.733 (5)° | Block, colourless |
| 0.25 × 0.16 × 0.16 mm | |
| Bruker APEXII CCD diffractometer | 2773 independent reflections |
| Radiation source: fine-focus sealed tube | 2107 reflections with |
| graphite | |
| Detector resolution: 10.0 pixels mm-1 | θmax = 31.4°, θmin = 2.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 11302 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2773 reflections | (Δ/σ)max < 0.001 |
| 146 parameters | Δρmax = 0.37 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| H12A | 0.1707 (12) | 1.015 (3) | 0.2850 (10) | 0.053 (5)* | |
| H12B | 0.1337 (11) | 0.802 (3) | 0.2512 (9) | 0.043 (4)* | |
| H13A | 0.3357 (16) | 1.149 (3) | 0.4112 (13) | 0.090 (7)* | |
| H13B | 0.2620 (13) | 1.136 (3) | 0.4466 (12) | 0.073 (6)* | |
| H10A | 0.1961 (13) | 0.509 (3) | 0.3165 (11) | 0.055 (5)* | |
| H10B | 0.2701 (11) | 0.531 (2) | 0.3943 (10) | 0.050 (4)* | |
| H11 | 0.3229 (11) | 0.826 (2) | 0.4490 (9) | 0.047 (4)* | |
| C1 | 0.54873 (7) | 0.08831 (15) | 0.67511 (6) | 0.0289 (2) | |
| C2 | 0.47896 (7) | 0.20438 (15) | 0.61002 (6) | 0.0306 (2) | |
| H2A | 0.4158 | 0.1689 | 0.6083 | 0.037* | |
| H2B | 0.4853 | 0.1628 | 0.5607 | 0.037* | |
| C3 | 0.49064 (7) | 0.43218 (15) | 0.61797 (6) | 0.0281 (2) | |
| H3A | 0.5542 | 0.4676 | 0.6209 | 0.034* | |
| H3B | 0.4826 | 0.4744 | 0.6666 | 0.034* | |
| C4 | 0.42163 (7) | 0.54741 (15) | 0.55112 (6) | 0.0291 (2) | |
| C5 | 0.22849 (7) | 0.78408 (16) | 0.34760 (6) | 0.0282 (2) | |
| N10 | 0.23172 (8) | 0.58414 (15) | 0.35140 (6) | 0.0381 (3) | |
| N11 | 0.28683 (7) | 0.88965 (14) | 0.40661 (6) | 0.0368 (2) | |
| N12 | 0.16935 (7) | 0.87957 (16) | 0.28669 (6) | 0.0379 (3) | |
| N13 | 0.27963 (9) | 1.10237 (16) | 0.40542 (7) | 0.0446 (3) | |
| O6 | 0.54679 (6) | −0.10939 (12) | 0.66765 (5) | 0.0436 (2) | |
| H6 | 0.5057 | −0.1414 | 0.6265 | 0.065* | |
| O7 | 0.60494 (6) | 0.17027 (12) | 0.73220 (5) | 0.0386 (2) | |
| O8 | 0.42768 (6) | 0.74200 (11) | 0.55212 (5) | 0.0395 (2) | |
| O9 | 0.36190 (7) | 0.45581 (13) | 0.49819 (5) | 0.0489 (3) |
| C1 | 0.0314 (5) | 0.0199 (4) | 0.0270 (5) | −0.0002 (4) | −0.0011 (4) | 0.0023 (3) |
| C2 | 0.0343 (5) | 0.0190 (4) | 0.0269 (5) | 0.0002 (4) | −0.0052 (4) | 0.0028 (3) |
| C3 | 0.0326 (5) | 0.0185 (4) | 0.0239 (4) | 0.0009 (3) | −0.0028 (4) | 0.0012 (3) |
| C4 | 0.0355 (5) | 0.0195 (4) | 0.0239 (4) | 0.0026 (4) | −0.0012 (4) | 0.0013 (3) |
| C5 | 0.0296 (5) | 0.0241 (4) | 0.0242 (4) | 0.0005 (4) | 0.0005 (4) | −0.0018 (3) |
| N10 | 0.0454 (6) | 0.0221 (4) | 0.0325 (5) | 0.0001 (4) | −0.0058 (4) | −0.0020 (4) |
| N11 | 0.0443 (5) | 0.0223 (4) | 0.0285 (4) | 0.0002 (4) | −0.0076 (4) | −0.0024 (3) |
| N12 | 0.0426 (5) | 0.0261 (5) | 0.0294 (5) | 0.0009 (4) | −0.0082 (4) | 0.0004 (4) |
| N13 | 0.0525 (7) | 0.0224 (4) | 0.0443 (6) | −0.0012 (4) | −0.0030 (5) | −0.0061 (4) |
| O6 | 0.0503 (5) | 0.0181 (3) | 0.0396 (5) | 0.0004 (3) | −0.0147 (4) | 0.0026 (3) |
| O7 | 0.0420 (5) | 0.0250 (4) | 0.0317 (4) | −0.0003 (3) | −0.0097 (3) | 0.0007 (3) |
| O8 | 0.0485 (5) | 0.0181 (3) | 0.0347 (4) | 0.0009 (3) | −0.0085 (3) | 0.0027 (3) |
| O9 | 0.0592 (6) | 0.0258 (4) | 0.0348 (4) | 0.0000 (4) | −0.0195 (4) | −0.0018 (3) |
| C1—O7 | 1.2200 (13) | C5—N12 | 1.3207 (13) |
| C1—O6 | 1.3043 (13) | C5—N11 | 1.3285 (13) |
| C1—C2 | 1.4978 (13) | N10—H10A | 0.840 (19) |
| C2—C3 | 1.5071 (15) | N10—H10B | 0.871 (17) |
| C2—H2A | 0.9700 | N11—N13 | 1.4003 (15) |
| C2—H2B | 0.9700 | N11—H11 | 0.884 (17) |
| C3—C4 | 1.5080 (13) | N12—H12A | 0.891 (19) |
| C3—H3A | 0.9700 | N12—H12B | 0.852 (16) |
| C3—H3B | 0.9700 | N13—H13A | 0.87 (2) |
| C4—O9 | 1.2293 (13) | N13—H13B | 0.90 (2) |
| C4—O8 | 1.2804 (12) | O6—H6 | 0.8200 |
| C5—N10 | 1.3144 (15) | ||
| O7—C1—O6 | 120.79 (9) | O8—C4—C3 | 117.56 (9) |
| O7—C1—C2 | 123.16 (9) | N10—C5—N12 | 121.37 (10) |
| O6—C1—C2 | 116.06 (8) | N10—C5—N11 | 118.42 (10) |
| C1—C2—C3 | 113.65 (8) | N12—C5—N11 | 120.21 (10) |
| C1—C2—H2A | 108.8 | C5—N10—H10A | 123.2 (12) |
| C3—C2—H2A | 108.8 | C5—N10—H10B | 116.7 (11) |
| C1—C2—H2B | 108.8 | H10A—N10—H10B | 119.9 (16) |
| C3—C2—H2B | 108.8 | C5—N11—N13 | 118.76 (9) |
| H2A—C2—H2B | 107.7 | C5—N11—H11 | 120.0 (10) |
| C2—C3—C4 | 113.22 (8) | N13—N11—H11 | 120.6 (10) |
| C2—C3—H3A | 108.9 | C5—N12—H12A | 119.1 (11) |
| C4—C3—H3A | 108.9 | C5—N12—H12B | 115.2 (11) |
| C2—C3—H3B | 108.9 | H12A—N12—H12B | 125.7 (16) |
| C4—C3—H3B | 108.9 | N11—N13—H13A | 106.3 (15) |
| H3A—C3—H3B | 107.7 | N11—N13—H13B | 106.1 (13) |
| O9—C4—O8 | 121.94 (9) | H13A—N13—H13B | 111 (2) |
| O9—C4—C3 | 120.50 (9) | C1—O6—H6 | 109.5 |
| O7—C1—C2—C3 | 5.34 (16) | C2—C3—C4—O8 | −178.55 (10) |
| O6—C1—C2—C3 | −174.44 (10) | N10—C5—N11—N13 | −175.87 (12) |
| C1—C2—C3—C4 | 178.57 (9) | N12—C5—N11—N13 | 4.49 (17) |
| C2—C3—C4—O9 | 1.74 (16) |
| H··· | ||||
| N10—H10B···O9 | 0.87 (2) | 1.99 (2) | 2.851 (1) | 171 (2) |
| N11—H11···O8 | 0.88 (2) | 2.07 (2) | 2.939 (1) | 166 (1) |
| N12—H12B···O6i | 0.85 (2) | 2.07 (2) | 2.921 (1) | 178 (2) |
| N10—H10A···O7i | 0.84 (2) | 2.05 (2) | 2.886 (1) | 178 (2) |
| O6—H6···O8ii | 0.82 | 1.65 | 2.456 (1) | 167 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N10—H10 | 0.87 (2) | 1.99 (2) | 2.851 (1) | 171 (2) |
| N11—H11⋯O8 | 0.88 (2) | 2.07 (2) | 2.939 (1) | 166 (1) |
| N12—H12 | 0.85 (2) | 2.07 (2) | 2.921 (1) | 178 (2) |
| N10—H10 | 0.84 (2) | 2.05 (2) | 2.886 (1) | 178 (2) |
| O6—H6⋯O8ii | 0.82 | 1.65 | 2.456 (1) | 167 |
Symmetry codes: (i) ; (ii) .