Literature DB >> 21578963

2-Iodo-3-meth-oxy-6-methyl-pyridine.

Wenbo Guo, Xueqin Liu, Long Li, Dongsheng Deng.   

Abstract

The title compound, C(7)H(8)INO, which crystallizes with three independent mol-ecules in the asymmetric unit, was prepared by the reaction of 3-meth-oxy-6-methyl-pyridine with KI and I(2) in tetra-hydro-furan solution. In the crystal structure, the three independent mol-ecules are arranged in a similar orientation with the three polar meth-oxy groups aligned on one side and the three non-polar methyl groups on the other side. The three mol-ecules, excluding methyl H atoms, are essentially planar, with r.m.s. deviations of 0.0141 (1), 0.0081 (1) and 0.0066 (2)Å. The three pyridine rings make dihedral angles of 58.09 (3) 66.64 (4) and 71.5 (3)°. The crystal structure features rather weak inter-molecular C-H⋯O hydrogen bonds, which link two mol-ecules into dimers, and short I⋯N contacts [4.046 (3) Å].

Entities:  

Year:  2009        PMID: 21578963      PMCID: PMC2971865          DOI: 10.1107/S1600536809050739

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For CC bond formation reactions, see: Vlad & Horvath (2002 ▶). For related structures, see: Bunker et al. (2009 ▶); Tahir et al. (2009 ▶).

Experimental

Crystal data

C7H8INO M = 249.04 Triclinic, a = 7.7974 (9) Å b = 10.8302 (12) Å c = 16.2898 (18) Å α = 106.093 (1)° β = 90.633 (1)° γ = 103.636 (1)° V = 1280.2 (2) Å3 Z = 6 Mo Kα radiation μ = 3.69 mm−1 T = 296 K 0.20 × 0.14 × 0.13 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.526, T max = 0.646 9886 measured reflections 4737 independent reflections 3719 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.062 S = 1.01 4737 reflections 278 parameters H-atom parameters constrained Δρmax = 0.56 e Å−3 Δρmin = −0.68 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809050739/bq2179sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809050739/bq2179Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H8INOZ = 6
Mr = 249.04F(000) = 708
Triclinic, P1Dx = 1.938 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7974 (9) ÅCell parameters from 3296 reflections
b = 10.8302 (12) Åθ = 2.7–23.1°
c = 16.2898 (18) ŵ = 3.69 mm1
α = 106.093 (1)°T = 296 K
β = 90.633 (1)°Block, colorless
γ = 103.636 (1)°0.20 × 0.14 × 0.13 mm
V = 1280.2 (2) Å3
Bruker APEXII CCD diffractometer4737 independent reflections
Radiation source: fine-focus sealed tube3719 reflections with I > 2σ(I)
graphiteRint = 0.026
phi and ω scansθmax = 25.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.526, Tmax = 0.646k = −12→13
9886 measured reflectionsl = −19→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H-atom parameters constrained
wR(F2) = 0.062w = 1/[σ2(Fo2) + (0.0183P)2 + 0.8733P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.001
4737 reflectionsΔρmax = 0.56 e Å3
278 parametersΔρmin = −0.68 e Å3
0 restraintsExtinction correction: SHELXS97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0067 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2655 (6)0.5314 (4)0.5640 (3)0.0522 (10)
C20.3438 (6)0.6096 (5)0.5130 (3)0.0581 (11)
C30.3160 (7)0.5495 (6)0.4251 (3)0.0776 (15)
H30.36330.59570.38700.093*
C40.2179 (7)0.4212 (6)0.3958 (3)0.0801 (15)
H40.20100.37970.33710.096*
C50.1440 (6)0.3525 (5)0.4509 (3)0.0652 (13)
C60.0322 (8)0.2131 (5)0.4196 (3)0.0905 (17)
H6A0.08960.15500.43800.136*
H6B0.01670.18660.35810.136*
H6C−0.08130.20840.44250.136*
C70.5208 (8)0.8131 (5)0.4975 (4)0.0900 (17)
H7A0.59240.76530.46000.135*
H7B0.59380.89610.53210.135*
H7C0.43110.82940.46390.135*
C80.5213 (6)0.3742 (4)0.0739 (2)0.0479 (10)
C90.6383 (6)0.4983 (4)0.0899 (3)0.0500 (10)
C100.5793 (7)0.6050 (4)0.1397 (3)0.0627 (12)
H100.65210.69060.15410.075*
C110.4127 (7)0.5816 (5)0.1669 (3)0.0671 (13)
H110.37250.65210.20040.081*
C120.3034 (6)0.4552 (5)0.1456 (3)0.0596 (11)
C130.1181 (7)0.4251 (5)0.1713 (3)0.0791 (15)
H13A0.03640.41200.12330.119*
H13B0.10290.49790.21760.119*
H13C0.09590.34600.18940.119*
C140.9152 (7)0.6345 (4)0.0738 (3)0.0765 (15)
H14A0.85910.69080.05270.115*
H14B1.02160.62760.04580.115*
H14C0.94380.67150.13450.115*
C150.1107 (5)0.9067 (4)0.2665 (2)0.0450 (9)
C160.2909 (5)0.9519 (4)0.2630 (3)0.0483 (10)
C170.3429 (6)1.0324 (4)0.2107 (3)0.0624 (12)
H170.46271.06600.20630.075*
C180.2179 (7)1.0628 (4)0.1653 (3)0.0646 (12)
H180.25281.11830.13080.077*
C190.0416 (6)1.0116 (4)0.1705 (3)0.0594 (11)
C20−0.1023 (7)1.0386 (6)0.1207 (4)0.0880 (17)
H20A−0.18290.95610.09030.132*
H20B−0.05051.08400.08070.132*
H20C−0.16521.09280.15960.132*
C210.5866 (6)0.9547 (5)0.3028 (4)0.0871 (17)
H21A0.60980.92760.24360.131*
H21B0.64990.91510.33510.131*
H21C0.62481.04950.32470.131*
I10.30556 (5)0.61072 (3)0.698542 (19)0.07157 (13)
I20.60344 (4)0.20520 (3)0.00399 (2)0.06819 (12)
I30.01400 (4)0.78330 (3)0.344715 (19)0.05933 (11)
N10.1683 (5)0.4079 (4)0.5349 (2)0.0568 (9)
N20.3602 (5)0.3508 (3)0.0991 (2)0.0538 (9)
N3−0.0123 (4)0.9329 (3)0.2220 (2)0.0526 (9)
O10.4377 (4)0.7353 (3)0.5523 (2)0.0727 (9)
O20.7978 (4)0.5059 (3)0.05666 (19)0.0619 (8)
O30.3999 (4)0.9124 (3)0.3106 (2)0.0648 (8)
U11U22U33U12U13U23
C10.059 (3)0.060 (3)0.043 (2)0.024 (2)0.006 (2)0.016 (2)
C20.058 (3)0.071 (3)0.058 (3)0.027 (2)0.010 (2)0.028 (2)
C30.080 (4)0.103 (4)0.060 (3)0.028 (3)0.011 (3)0.036 (3)
C40.096 (4)0.098 (4)0.043 (3)0.029 (4)0.001 (3)0.012 (3)
C50.065 (3)0.071 (3)0.056 (3)0.024 (3)−0.006 (2)0.005 (2)
C60.106 (4)0.082 (4)0.069 (3)0.022 (3)−0.012 (3)0.000 (3)
C70.091 (4)0.091 (4)0.104 (4)0.014 (3)0.018 (3)0.061 (4)
C80.062 (3)0.040 (2)0.045 (2)0.017 (2)−0.005 (2)0.0143 (18)
C90.061 (3)0.042 (2)0.046 (2)0.013 (2)−0.008 (2)0.0104 (19)
C100.081 (3)0.043 (2)0.060 (3)0.016 (2)0.002 (3)0.008 (2)
C110.092 (4)0.058 (3)0.058 (3)0.034 (3)0.009 (3)0.014 (2)
C120.065 (3)0.069 (3)0.056 (3)0.028 (3)0.005 (2)0.026 (2)
C130.076 (4)0.100 (4)0.074 (3)0.035 (3)0.017 (3)0.035 (3)
C140.079 (4)0.053 (3)0.079 (3)−0.005 (3)0.003 (3)0.008 (3)
C150.046 (2)0.035 (2)0.050 (2)0.0075 (18)0.0084 (19)0.0084 (18)
C160.045 (2)0.039 (2)0.058 (3)0.0087 (19)0.004 (2)0.0093 (19)
C170.052 (3)0.047 (3)0.083 (3)0.003 (2)0.017 (2)0.017 (2)
C180.068 (3)0.052 (3)0.077 (3)0.006 (2)0.015 (3)0.032 (2)
C190.069 (3)0.050 (3)0.058 (3)0.011 (2)0.002 (2)0.017 (2)
C200.083 (4)0.095 (4)0.098 (4)0.016 (3)−0.008 (3)0.054 (3)
C210.047 (3)0.090 (4)0.128 (5)0.012 (3)0.003 (3)0.041 (4)
I10.0894 (3)0.0652 (2)0.04841 (18)0.00163 (17)0.00875 (16)0.01222 (15)
I20.0630 (2)0.03952 (17)0.0968 (3)0.01431 (14)0.00303 (17)0.01007 (16)
I30.05512 (19)0.0623 (2)0.0677 (2)0.01301 (14)0.01072 (14)0.03120 (15)
N10.064 (2)0.057 (2)0.050 (2)0.0183 (19)0.0019 (18)0.0131 (18)
N20.057 (2)0.056 (2)0.057 (2)0.0195 (18)0.0023 (18)0.0244 (18)
N30.049 (2)0.045 (2)0.061 (2)0.0090 (16)0.0021 (17)0.0147 (17)
O10.079 (2)0.066 (2)0.076 (2)0.0091 (18)0.0111 (18)0.0331 (18)
O20.0599 (19)0.0423 (16)0.0701 (19)0.0027 (14)0.0029 (16)0.0033 (14)
O30.0402 (16)0.069 (2)0.087 (2)0.0107 (15)0.0047 (15)0.0270 (17)
C1—N11.323 (5)C12—N21.348 (5)
C1—C21.392 (6)C12—C131.496 (6)
C1—I12.110 (4)C13—H13A0.9600
C2—O11.355 (5)C13—H13B0.9600
C2—C31.390 (6)C13—H13C0.9600
C3—C41.366 (7)C14—O21.426 (5)
C3—H30.9300C14—H14A0.9600
C4—C51.368 (7)C14—H14B0.9600
C4—H40.9300C14—H14C0.9600
C5—N11.324 (5)C15—N31.324 (5)
C5—C61.497 (7)C15—C161.382 (5)
C6—H6A0.9600C15—I32.114 (4)
C6—H6B0.9600C16—O31.359 (5)
C6—H6C0.9600C16—C171.380 (6)
C7—O11.449 (5)C17—C181.369 (6)
C7—H7A0.9600C17—H170.9300
C7—H7B0.9600C18—C191.369 (6)
C7—H7C0.9600C18—H180.9300
C8—N21.315 (5)C19—N31.357 (5)
C8—C91.389 (5)C19—C201.506 (6)
C8—I22.115 (4)C20—H20A0.9600
C9—O21.356 (5)C20—H20B0.9600
C9—C101.394 (6)C20—H20C0.9600
C10—C111.367 (6)C21—O31.438 (5)
C10—H100.9300C21—H21A0.9600
C11—C121.379 (6)C21—H21B0.9600
C11—H110.9300C21—H21C0.9600
N1—C1—C2125.0 (4)H13A—C13—H13B109.5
N1—C1—I1116.1 (3)C12—C13—H13C109.5
C2—C1—I1118.9 (3)H13A—C13—H13C109.5
O1—C2—C3126.1 (4)H13B—C13—H13C109.5
O1—C2—C1118.2 (4)O2—C14—H14A109.5
C3—C2—C1115.6 (5)O2—C14—H14B109.5
C4—C3—C2118.8 (5)H14A—C14—H14B109.5
C4—C3—H3120.6O2—C14—H14C109.5
C2—C3—H3120.6H14A—C14—H14C109.5
C3—C4—C5121.4 (5)H14B—C14—H14C109.5
C3—C4—H4119.3N3—C15—C16124.5 (4)
C5—C4—H4119.3N3—C15—I3115.2 (3)
N1—C5—C4120.8 (5)C16—C15—I3120.3 (3)
N1—C5—C6117.3 (5)O3—C16—C17126.2 (4)
C4—C5—C6122.0 (5)O3—C16—C15117.2 (4)
C5—C6—H6A109.5C17—C16—C15116.6 (4)
C5—C6—H6B109.5C18—C17—C16119.8 (4)
H6A—C6—H6B109.5C18—C17—H17120.1
C5—C6—H6C109.5C16—C17—H17120.1
H6A—C6—H6C109.5C19—C18—C17120.2 (4)
H6B—C6—H6C109.5C19—C18—H18119.9
O1—C7—H7A109.5C17—C18—H18119.9
O1—C7—H7B109.5N3—C19—C18120.8 (4)
H7A—C7—H7B109.5N3—C19—C20116.4 (4)
O1—C7—H7C109.5C18—C19—C20122.8 (4)
H7A—C7—H7C109.5C19—C20—H20A109.5
H7B—C7—H7C109.5C19—C20—H20B109.5
N2—C8—C9125.6 (4)H20A—C20—H20B109.5
N2—C8—I2115.6 (3)C19—C20—H20C109.5
C9—C8—I2118.8 (3)H20A—C20—H20C109.5
O2—C9—C8118.2 (4)H20B—C20—H20C109.5
O2—C9—C10125.8 (4)O3—C21—H21A109.5
C8—C9—C10116.0 (4)O3—C21—H21B109.5
C11—C10—C9118.9 (4)H21A—C21—H21B109.5
C11—C10—H10120.6O3—C21—H21C109.5
C9—C10—H10120.6H21A—C21—H21C109.5
C10—C11—C12121.0 (4)H21B—C21—H21C109.5
C10—C11—H11119.5C1—N1—C5118.3 (4)
C12—C11—H11119.5C8—N2—C12117.8 (4)
N2—C12—C11120.6 (4)C15—N3—C19118.0 (4)
N2—C12—C13116.3 (4)C2—O1—C7116.9 (4)
C11—C12—C13123.1 (4)C9—O2—C14117.1 (3)
C12—C13—H13A109.5C16—O3—C21116.5 (4)
C12—C13—H13B109.5
N1—C1—C2—O1179.0 (4)C15—C16—C17—C18−0.4 (6)
I1—C1—C2—O1−2.2 (5)C16—C17—C18—C19−1.1 (7)
N1—C1—C2—C3−0.6 (7)C17—C18—C19—N31.5 (7)
I1—C1—C2—C3178.2 (3)C17—C18—C19—C20−178.5 (5)
O1—C2—C3—C4179.9 (5)C2—C1—N1—C50.8 (6)
C1—C2—C3—C4−0.5 (7)I1—C1—N1—C5−178.0 (3)
C2—C3—C4—C51.5 (8)C4—C5—N1—C10.1 (7)
C3—C4—C5—N1−1.3 (8)C6—C5—N1—C1−179.5 (4)
C3—C4—C5—C6178.4 (5)C9—C8—N2—C12−1.1 (6)
N2—C8—C9—O2−177.6 (4)I2—C8—N2—C12178.5 (3)
I2—C8—C9—O22.8 (5)C11—C12—N2—C8−1.1 (6)
N2—C8—C9—C102.5 (6)C13—C12—N2—C8178.6 (4)
I2—C8—C9—C10−177.2 (3)C16—C15—N3—C19−1.5 (6)
O2—C9—C10—C11178.5 (4)I3—C15—N3—C19−180.0 (3)
C8—C9—C10—C11−1.6 (6)C18—C19—N3—C15−0.3 (6)
C9—C10—C11—C12−0.4 (7)C20—C19—N3—C15179.8 (4)
C10—C11—C12—N21.8 (7)C3—C2—O1—C7−1.8 (7)
C10—C11—C12—C13−177.9 (4)C1—C2—O1—C7178.7 (4)
N3—C15—C16—O3−177.8 (3)C8—C9—O2—C14179.8 (4)
I3—C15—C16—O30.7 (5)C10—C9—O2—C14−0.3 (6)
N3—C15—C16—C171.8 (6)C17—C16—O3—C21−2.6 (6)
I3—C15—C16—C17−179.7 (3)C15—C16—O3—C21177.0 (4)
O3—C16—C17—C18179.1 (4)
D—H···AD—HH···AD···AD—H···A
C14—H14B···O2i0.962.563.429 (6)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C14—H14B⋯O2i 0.962.563.429 (6)151

Symmetry code: (i) .

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