| Literature DB >> 21578963 |
Wenbo Guo, Xueqin Liu, Long Li, Dongsheng Deng.
Abstract
The title compound, C(7)H(8)INO, which crystallizes with three independent mol-ecules in the asymmetric unit, was prepared by the reaction of 3-meth-oxy-6-methyl-pyridine with KI and I(2) in tetra-hydro-furan solution. In the crystal structure, the three independent mol-ecules are arranged in a similar orientation with the three polar meth-oxy groups aligned on one side and the three non-polar methyl groups on the other side. The three mol-ecules, excluding methyl H atoms, are essentially planar, with r.m.s. deviations of 0.0141 (1), 0.0081 (1) and 0.0066 (2)Å. The three pyridine rings make dihedral angles of 58.09 (3) 66.64 (4) and 71.5 (3)°. The crystal structure features rather weak inter-molecular C-H⋯O hydrogen bonds, which link two mol-ecules into dimers, and short I⋯N contacts [4.046 (3) Å].Entities:
Year: 2009 PMID: 21578963 PMCID: PMC2971865 DOI: 10.1107/S1600536809050739
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H8INO | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3296 reflections | |
| θ = 2.7–23.1° | |
| µ = 3.69 mm−1 | |
| α = 106.093 (1)° | |
| β = 90.633 (1)° | Block, colorless |
| γ = 103.636 (1)° | 0.20 × 0.14 × 0.13 mm |
| Bruker APEXII CCD diffractometer | 4737 independent reflections |
| Radiation source: fine-focus sealed tube | 3719 reflections with |
| graphite | |
| phi and ω scans | θmax = 25.5°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 9886 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 4737 reflections | Δρmax = 0.56 e Å−3 |
| 278 parameters | Δρmin = −0.68 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0067 (3) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.2655 (6) | 0.5314 (4) | 0.5640 (3) | 0.0522 (10) | |
| C2 | 0.3438 (6) | 0.6096 (5) | 0.5130 (3) | 0.0581 (11) | |
| C3 | 0.3160 (7) | 0.5495 (6) | 0.4251 (3) | 0.0776 (15) | |
| H3 | 0.3633 | 0.5957 | 0.3870 | 0.093* | |
| C4 | 0.2179 (7) | 0.4212 (6) | 0.3958 (3) | 0.0801 (15) | |
| H4 | 0.2010 | 0.3797 | 0.3371 | 0.096* | |
| C5 | 0.1440 (6) | 0.3525 (5) | 0.4509 (3) | 0.0652 (13) | |
| C6 | 0.0322 (8) | 0.2131 (5) | 0.4196 (3) | 0.0905 (17) | |
| H6A | 0.0896 | 0.1550 | 0.4380 | 0.136* | |
| H6B | 0.0167 | 0.1866 | 0.3581 | 0.136* | |
| H6C | −0.0813 | 0.2084 | 0.4425 | 0.136* | |
| C7 | 0.5208 (8) | 0.8131 (5) | 0.4975 (4) | 0.0900 (17) | |
| H7A | 0.5924 | 0.7653 | 0.4600 | 0.135* | |
| H7B | 0.5938 | 0.8961 | 0.5321 | 0.135* | |
| H7C | 0.4311 | 0.8294 | 0.4639 | 0.135* | |
| C8 | 0.5213 (6) | 0.3742 (4) | 0.0739 (2) | 0.0479 (10) | |
| C9 | 0.6383 (6) | 0.4983 (4) | 0.0899 (3) | 0.0500 (10) | |
| C10 | 0.5793 (7) | 0.6050 (4) | 0.1397 (3) | 0.0627 (12) | |
| H10 | 0.6521 | 0.6906 | 0.1541 | 0.075* | |
| C11 | 0.4127 (7) | 0.5816 (5) | 0.1669 (3) | 0.0671 (13) | |
| H11 | 0.3725 | 0.6521 | 0.2004 | 0.081* | |
| C12 | 0.3034 (6) | 0.4552 (5) | 0.1456 (3) | 0.0596 (11) | |
| C13 | 0.1181 (7) | 0.4251 (5) | 0.1713 (3) | 0.0791 (15) | |
| H13A | 0.0364 | 0.4120 | 0.1233 | 0.119* | |
| H13B | 0.1029 | 0.4979 | 0.2176 | 0.119* | |
| H13C | 0.0959 | 0.3460 | 0.1894 | 0.119* | |
| C14 | 0.9152 (7) | 0.6345 (4) | 0.0738 (3) | 0.0765 (15) | |
| H14A | 0.8591 | 0.6908 | 0.0527 | 0.115* | |
| H14B | 1.0216 | 0.6276 | 0.0458 | 0.115* | |
| H14C | 0.9438 | 0.6715 | 0.1345 | 0.115* | |
| C15 | 0.1107 (5) | 0.9067 (4) | 0.2665 (2) | 0.0450 (9) | |
| C16 | 0.2909 (5) | 0.9519 (4) | 0.2630 (3) | 0.0483 (10) | |
| C17 | 0.3429 (6) | 1.0324 (4) | 0.2107 (3) | 0.0624 (12) | |
| H17 | 0.4627 | 1.0660 | 0.2063 | 0.075* | |
| C18 | 0.2179 (7) | 1.0628 (4) | 0.1653 (3) | 0.0646 (12) | |
| H18 | 0.2528 | 1.1183 | 0.1308 | 0.077* | |
| C19 | 0.0416 (6) | 1.0116 (4) | 0.1705 (3) | 0.0594 (11) | |
| C20 | −0.1023 (7) | 1.0386 (6) | 0.1207 (4) | 0.0880 (17) | |
| H20A | −0.1829 | 0.9561 | 0.0903 | 0.132* | |
| H20B | −0.0505 | 1.0840 | 0.0807 | 0.132* | |
| H20C | −0.1652 | 1.0928 | 0.1596 | 0.132* | |
| C21 | 0.5866 (6) | 0.9547 (5) | 0.3028 (4) | 0.0871 (17) | |
| H21A | 0.6098 | 0.9276 | 0.2436 | 0.131* | |
| H21B | 0.6499 | 0.9151 | 0.3351 | 0.131* | |
| H21C | 0.6248 | 1.0495 | 0.3247 | 0.131* | |
| I1 | 0.30556 (5) | 0.61072 (3) | 0.698542 (19) | 0.07157 (13) | |
| I2 | 0.60344 (4) | 0.20520 (3) | 0.00399 (2) | 0.06819 (12) | |
| I3 | 0.01400 (4) | 0.78330 (3) | 0.344715 (19) | 0.05933 (11) | |
| N1 | 0.1683 (5) | 0.4079 (4) | 0.5349 (2) | 0.0568 (9) | |
| N2 | 0.3602 (5) | 0.3508 (3) | 0.0991 (2) | 0.0538 (9) | |
| N3 | −0.0123 (4) | 0.9329 (3) | 0.2220 (2) | 0.0526 (9) | |
| O1 | 0.4377 (4) | 0.7353 (3) | 0.5523 (2) | 0.0727 (9) | |
| O2 | 0.7978 (4) | 0.5059 (3) | 0.05666 (19) | 0.0619 (8) | |
| O3 | 0.3999 (4) | 0.9124 (3) | 0.3106 (2) | 0.0648 (8) |
| C1 | 0.059 (3) | 0.060 (3) | 0.043 (2) | 0.024 (2) | 0.006 (2) | 0.016 (2) |
| C2 | 0.058 (3) | 0.071 (3) | 0.058 (3) | 0.027 (2) | 0.010 (2) | 0.028 (2) |
| C3 | 0.080 (4) | 0.103 (4) | 0.060 (3) | 0.028 (3) | 0.011 (3) | 0.036 (3) |
| C4 | 0.096 (4) | 0.098 (4) | 0.043 (3) | 0.029 (4) | 0.001 (3) | 0.012 (3) |
| C5 | 0.065 (3) | 0.071 (3) | 0.056 (3) | 0.024 (3) | −0.006 (2) | 0.005 (2) |
| C6 | 0.106 (4) | 0.082 (4) | 0.069 (3) | 0.022 (3) | −0.012 (3) | 0.000 (3) |
| C7 | 0.091 (4) | 0.091 (4) | 0.104 (4) | 0.014 (3) | 0.018 (3) | 0.061 (4) |
| C8 | 0.062 (3) | 0.040 (2) | 0.045 (2) | 0.017 (2) | −0.005 (2) | 0.0143 (18) |
| C9 | 0.061 (3) | 0.042 (2) | 0.046 (2) | 0.013 (2) | −0.008 (2) | 0.0104 (19) |
| C10 | 0.081 (3) | 0.043 (2) | 0.060 (3) | 0.016 (2) | 0.002 (3) | 0.008 (2) |
| C11 | 0.092 (4) | 0.058 (3) | 0.058 (3) | 0.034 (3) | 0.009 (3) | 0.014 (2) |
| C12 | 0.065 (3) | 0.069 (3) | 0.056 (3) | 0.028 (3) | 0.005 (2) | 0.026 (2) |
| C13 | 0.076 (4) | 0.100 (4) | 0.074 (3) | 0.035 (3) | 0.017 (3) | 0.035 (3) |
| C14 | 0.079 (4) | 0.053 (3) | 0.079 (3) | −0.005 (3) | 0.003 (3) | 0.008 (3) |
| C15 | 0.046 (2) | 0.035 (2) | 0.050 (2) | 0.0075 (18) | 0.0084 (19) | 0.0084 (18) |
| C16 | 0.045 (2) | 0.039 (2) | 0.058 (3) | 0.0087 (19) | 0.004 (2) | 0.0093 (19) |
| C17 | 0.052 (3) | 0.047 (3) | 0.083 (3) | 0.003 (2) | 0.017 (2) | 0.017 (2) |
| C18 | 0.068 (3) | 0.052 (3) | 0.077 (3) | 0.006 (2) | 0.015 (3) | 0.032 (2) |
| C19 | 0.069 (3) | 0.050 (3) | 0.058 (3) | 0.011 (2) | 0.002 (2) | 0.017 (2) |
| C20 | 0.083 (4) | 0.095 (4) | 0.098 (4) | 0.016 (3) | −0.008 (3) | 0.054 (3) |
| C21 | 0.047 (3) | 0.090 (4) | 0.128 (5) | 0.012 (3) | 0.003 (3) | 0.041 (4) |
| I1 | 0.0894 (3) | 0.0652 (2) | 0.04841 (18) | 0.00163 (17) | 0.00875 (16) | 0.01222 (15) |
| I2 | 0.0630 (2) | 0.03952 (17) | 0.0968 (3) | 0.01431 (14) | 0.00303 (17) | 0.01007 (16) |
| I3 | 0.05512 (19) | 0.0623 (2) | 0.0677 (2) | 0.01301 (14) | 0.01072 (14) | 0.03120 (15) |
| N1 | 0.064 (2) | 0.057 (2) | 0.050 (2) | 0.0183 (19) | 0.0019 (18) | 0.0131 (18) |
| N2 | 0.057 (2) | 0.056 (2) | 0.057 (2) | 0.0195 (18) | 0.0023 (18) | 0.0244 (18) |
| N3 | 0.049 (2) | 0.045 (2) | 0.061 (2) | 0.0090 (16) | 0.0021 (17) | 0.0147 (17) |
| O1 | 0.079 (2) | 0.066 (2) | 0.076 (2) | 0.0091 (18) | 0.0111 (18) | 0.0331 (18) |
| O2 | 0.0599 (19) | 0.0423 (16) | 0.0701 (19) | 0.0027 (14) | 0.0029 (16) | 0.0033 (14) |
| O3 | 0.0402 (16) | 0.069 (2) | 0.087 (2) | 0.0107 (15) | 0.0047 (15) | 0.0270 (17) |
| C1—N1 | 1.323 (5) | C12—N2 | 1.348 (5) |
| C1—C2 | 1.392 (6) | C12—C13 | 1.496 (6) |
| C1—I1 | 2.110 (4) | C13—H13A | 0.9600 |
| C2—O1 | 1.355 (5) | C13—H13B | 0.9600 |
| C2—C3 | 1.390 (6) | C13—H13C | 0.9600 |
| C3—C4 | 1.366 (7) | C14—O2 | 1.426 (5) |
| C3—H3 | 0.9300 | C14—H14A | 0.9600 |
| C4—C5 | 1.368 (7) | C14—H14B | 0.9600 |
| C4—H4 | 0.9300 | C14—H14C | 0.9600 |
| C5—N1 | 1.324 (5) | C15—N3 | 1.324 (5) |
| C5—C6 | 1.497 (7) | C15—C16 | 1.382 (5) |
| C6—H6A | 0.9600 | C15—I3 | 2.114 (4) |
| C6—H6B | 0.9600 | C16—O3 | 1.359 (5) |
| C6—H6C | 0.9600 | C16—C17 | 1.380 (6) |
| C7—O1 | 1.449 (5) | C17—C18 | 1.369 (6) |
| C7—H7A | 0.9600 | C17—H17 | 0.9300 |
| C7—H7B | 0.9600 | C18—C19 | 1.369 (6) |
| C7—H7C | 0.9600 | C18—H18 | 0.9300 |
| C8—N2 | 1.315 (5) | C19—N3 | 1.357 (5) |
| C8—C9 | 1.389 (5) | C19—C20 | 1.506 (6) |
| C8—I2 | 2.115 (4) | C20—H20A | 0.9600 |
| C9—O2 | 1.356 (5) | C20—H20B | 0.9600 |
| C9—C10 | 1.394 (6) | C20—H20C | 0.9600 |
| C10—C11 | 1.367 (6) | C21—O3 | 1.438 (5) |
| C10—H10 | 0.9300 | C21—H21A | 0.9600 |
| C11—C12 | 1.379 (6) | C21—H21B | 0.9600 |
| C11—H11 | 0.9300 | C21—H21C | 0.9600 |
| N1—C1—C2 | 125.0 (4) | H13A—C13—H13B | 109.5 |
| N1—C1—I1 | 116.1 (3) | C12—C13—H13C | 109.5 |
| C2—C1—I1 | 118.9 (3) | H13A—C13—H13C | 109.5 |
| O1—C2—C3 | 126.1 (4) | H13B—C13—H13C | 109.5 |
| O1—C2—C1 | 118.2 (4) | O2—C14—H14A | 109.5 |
| C3—C2—C1 | 115.6 (5) | O2—C14—H14B | 109.5 |
| C4—C3—C2 | 118.8 (5) | H14A—C14—H14B | 109.5 |
| C4—C3—H3 | 120.6 | O2—C14—H14C | 109.5 |
| C2—C3—H3 | 120.6 | H14A—C14—H14C | 109.5 |
| C3—C4—C5 | 121.4 (5) | H14B—C14—H14C | 109.5 |
| C3—C4—H4 | 119.3 | N3—C15—C16 | 124.5 (4) |
| C5—C4—H4 | 119.3 | N3—C15—I3 | 115.2 (3) |
| N1—C5—C4 | 120.8 (5) | C16—C15—I3 | 120.3 (3) |
| N1—C5—C6 | 117.3 (5) | O3—C16—C17 | 126.2 (4) |
| C4—C5—C6 | 122.0 (5) | O3—C16—C15 | 117.2 (4) |
| C5—C6—H6A | 109.5 | C17—C16—C15 | 116.6 (4) |
| C5—C6—H6B | 109.5 | C18—C17—C16 | 119.8 (4) |
| H6A—C6—H6B | 109.5 | C18—C17—H17 | 120.1 |
| C5—C6—H6C | 109.5 | C16—C17—H17 | 120.1 |
| H6A—C6—H6C | 109.5 | C19—C18—C17 | 120.2 (4) |
| H6B—C6—H6C | 109.5 | C19—C18—H18 | 119.9 |
| O1—C7—H7A | 109.5 | C17—C18—H18 | 119.9 |
| O1—C7—H7B | 109.5 | N3—C19—C18 | 120.8 (4) |
| H7A—C7—H7B | 109.5 | N3—C19—C20 | 116.4 (4) |
| O1—C7—H7C | 109.5 | C18—C19—C20 | 122.8 (4) |
| H7A—C7—H7C | 109.5 | C19—C20—H20A | 109.5 |
| H7B—C7—H7C | 109.5 | C19—C20—H20B | 109.5 |
| N2—C8—C9 | 125.6 (4) | H20A—C20—H20B | 109.5 |
| N2—C8—I2 | 115.6 (3) | C19—C20—H20C | 109.5 |
| C9—C8—I2 | 118.8 (3) | H20A—C20—H20C | 109.5 |
| O2—C9—C8 | 118.2 (4) | H20B—C20—H20C | 109.5 |
| O2—C9—C10 | 125.8 (4) | O3—C21—H21A | 109.5 |
| C8—C9—C10 | 116.0 (4) | O3—C21—H21B | 109.5 |
| C11—C10—C9 | 118.9 (4) | H21A—C21—H21B | 109.5 |
| C11—C10—H10 | 120.6 | O3—C21—H21C | 109.5 |
| C9—C10—H10 | 120.6 | H21A—C21—H21C | 109.5 |
| C10—C11—C12 | 121.0 (4) | H21B—C21—H21C | 109.5 |
| C10—C11—H11 | 119.5 | C1—N1—C5 | 118.3 (4) |
| C12—C11—H11 | 119.5 | C8—N2—C12 | 117.8 (4) |
| N2—C12—C11 | 120.6 (4) | C15—N3—C19 | 118.0 (4) |
| N2—C12—C13 | 116.3 (4) | C2—O1—C7 | 116.9 (4) |
| C11—C12—C13 | 123.1 (4) | C9—O2—C14 | 117.1 (3) |
| C12—C13—H13A | 109.5 | C16—O3—C21 | 116.5 (4) |
| C12—C13—H13B | 109.5 | ||
| N1—C1—C2—O1 | 179.0 (4) | C15—C16—C17—C18 | −0.4 (6) |
| I1—C1—C2—O1 | −2.2 (5) | C16—C17—C18—C19 | −1.1 (7) |
| N1—C1—C2—C3 | −0.6 (7) | C17—C18—C19—N3 | 1.5 (7) |
| I1—C1—C2—C3 | 178.2 (3) | C17—C18—C19—C20 | −178.5 (5) |
| O1—C2—C3—C4 | 179.9 (5) | C2—C1—N1—C5 | 0.8 (6) |
| C1—C2—C3—C4 | −0.5 (7) | I1—C1—N1—C5 | −178.0 (3) |
| C2—C3—C4—C5 | 1.5 (8) | C4—C5—N1—C1 | 0.1 (7) |
| C3—C4—C5—N1 | −1.3 (8) | C6—C5—N1—C1 | −179.5 (4) |
| C3—C4—C5—C6 | 178.4 (5) | C9—C8—N2—C12 | −1.1 (6) |
| N2—C8—C9—O2 | −177.6 (4) | I2—C8—N2—C12 | 178.5 (3) |
| I2—C8—C9—O2 | 2.8 (5) | C11—C12—N2—C8 | −1.1 (6) |
| N2—C8—C9—C10 | 2.5 (6) | C13—C12—N2—C8 | 178.6 (4) |
| I2—C8—C9—C10 | −177.2 (3) | C16—C15—N3—C19 | −1.5 (6) |
| O2—C9—C10—C11 | 178.5 (4) | I3—C15—N3—C19 | −180.0 (3) |
| C8—C9—C10—C11 | −1.6 (6) | C18—C19—N3—C15 | −0.3 (6) |
| C9—C10—C11—C12 | −0.4 (7) | C20—C19—N3—C15 | 179.8 (4) |
| C10—C11—C12—N2 | 1.8 (7) | C3—C2—O1—C7 | −1.8 (7) |
| C10—C11—C12—C13 | −177.9 (4) | C1—C2—O1—C7 | 178.7 (4) |
| N3—C15—C16—O3 | −177.8 (3) | C8—C9—O2—C14 | 179.8 (4) |
| I3—C15—C16—O3 | 0.7 (5) | C10—C9—O2—C14 | −0.3 (6) |
| N3—C15—C16—C17 | 1.8 (6) | C17—C16—O3—C21 | −2.6 (6) |
| I3—C15—C16—C17 | −179.7 (3) | C15—C16—O3—C21 | 177.0 (4) |
| O3—C16—C17—C18 | 179.1 (4) |
| H··· | ||||
| C14—H14B···O2i | 0.96 | 2.56 | 3.429 (6) | 151 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C14—H14 | 0.96 | 2.56 | 3.429 (6) | 151 |
Symmetry code: (i) .