| Literature DB >> 21581671 |
Kevin D Bunker, Neal W Sach, Seiji Nukui, Arnold L Rheingold, Alex Yanovsky.
Abstract
The reaction of 3-amino-5-bromo-pyridine with N-iodo-succinimide in the presence of acetic acid produces the title compound, C(5)H(4)BrIN, with an iodo substituent in position 2 of the pyridine ring. The crystal structure features rather weak inter-molecular N-H⋯N hydrogen bonds linking the mol-ecules into chains along the z axis of the crystal.Entities:
Year: 2008 PMID: 21581671 PMCID: PMC2967947 DOI: 10.1107/S1600536808040452
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H4BrIN2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2536 reflections |
| θ = 2.7–25.3° | |
| µ = 9.53 mm−1 | |
| β = 90.152 (5)° | Plate, colourless |
| 0.40 × 0.33 × 0.04 mm | |
| Bruker APEXII CCD diffractometer | 1251 independent reflections |
| Radiation source: fine-focus sealed tube | 1086 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.3°, θmin = 2.2° |
| Absorption correction: analytical ( | |
| 3783 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1251 reflections | (Δ/σ)max = 0.003 |
| 82 parameters | Δρmax = 1.33 e Å−3 |
| 0 restraints | Δρmin = −0.92 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| I1 | 0.18405 (10) | 0.37509 (3) | 0.48761 (3) | 0.02516 (17) | |
| Br1 | −0.56202 (16) | 0.01782 (4) | 0.28399 (5) | 0.0266 (2) | |
| N2 | −0.0278 (15) | 0.3306 (4) | 0.2326 (4) | 0.0298 (13) | |
| H2A | −0.0808 | 0.3282 | 0.1617 | 0.036* | |
| H2B | 0.0760 | 0.3769 | 0.2589 | 0.036* | |
| N1 | −0.1133 (14) | 0.1994 (4) | 0.4858 (4) | 0.0264 (13) | |
| C2 | −0.2684 (18) | 0.1278 (4) | 0.4470 (6) | 0.0264 (15) | |
| H2 | −0.3243 | 0.0815 | 0.4965 | 0.032* | |
| C1 | −0.0390 (15) | 0.2637 (5) | 0.4165 (5) | 0.0242 (14) | |
| C5 | −0.1071 (15) | 0.2622 (5) | 0.3019 (5) | 0.0227 (14) | |
| C3 | −0.3480 (16) | 0.1208 (4) | 0.3350 (5) | 0.0221 (14) | |
| C4 | −0.2713 (15) | 0.1878 (4) | 0.2636 (5) | 0.0213 (14) | |
| H4 | −0.3303 | 0.1834 | 0.1874 | 0.026* |
| I1 | 0.0244 (3) | 0.0324 (3) | 0.0187 (3) | −0.00094 (16) | −0.00522 (18) | −0.00340 (17) |
| Br1 | 0.0285 (4) | 0.0274 (4) | 0.0238 (4) | −0.0007 (3) | −0.0039 (3) | −0.0027 (3) |
| N2 | 0.044 (4) | 0.029 (3) | 0.016 (3) | −0.002 (3) | −0.008 (3) | −0.001 (2) |
| N1 | 0.035 (3) | 0.030 (3) | 0.015 (3) | 0.002 (2) | −0.005 (2) | 0.002 (2) |
| C2 | 0.035 (4) | 0.024 (4) | 0.020 (3) | 0.000 (3) | −0.007 (3) | 0.002 (3) |
| C1 | 0.017 (3) | 0.036 (4) | 0.020 (3) | 0.004 (3) | −0.006 (3) | −0.008 (3) |
| C5 | 0.017 (3) | 0.035 (4) | 0.016 (3) | 0.006 (3) | −0.001 (2) | −0.002 (3) |
| C3 | 0.021 (4) | 0.027 (4) | 0.018 (3) | 0.005 (3) | −0.001 (3) | −0.001 (3) |
| C4 | 0.021 (3) | 0.033 (4) | 0.011 (3) | 0.007 (3) | −0.005 (2) | −0.006 (3) |
| I1—C1 | 2.102 (7) | C2—C3 | 1.390 (9) |
| Br1—C3 | 1.894 (7) | C2—H2 | 0.9500 |
| N2—C5 | 1.371 (9) | C1—C5 | 1.407 (9) |
| N2—H2A | 0.8800 | C5—C4 | 1.393 (9) |
| N2—H2B | 0.8800 | C3—C4 | 1.368 (9) |
| N1—C1 | 1.320 (9) | C4—H4 | 0.9500 |
| N1—C2 | 1.342 (9) | ||
| C5—N2—H2A | 120.0 | N2—C5—C4 | 121.8 (5) |
| C5—N2—H2B | 120.0 | N2—C5—C1 | 122.6 (6) |
| H2A—N2—H2B | 120.0 | C4—C5—C1 | 115.6 (6) |
| C1—N1—C2 | 119.3 (5) | C4—C3—C2 | 119.9 (6) |
| N1—C2—C3 | 120.6 (6) | C4—C3—Br1 | 121.1 (5) |
| N1—C2—H2 | 119.7 | C2—C3—Br1 | 119.0 (5) |
| C3—C2—H2 | 119.7 | C3—C4—C5 | 120.4 (6) |
| N1—C1—C5 | 124.2 (6) | C3—C4—H4 | 119.8 |
| N1—C1—I1 | 116.0 (4) | C5—C4—H4 | 119.8 |
| C5—C1—I1 | 119.8 (5) |
| H··· | ||||
| N2—H2A···N1i | 0.88 | 2.16 | 3.025 (8) | 166 |
| N2—H2B···I1 | 0.88 | 2.79 | 3.259 (5) | 115 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.88 | 2.16 | 3.025 (8) | 166 |
| N2—H2 | 0.88 | 2.79 | 3.259 (5) | 115 |
Symmetry code: (i) .