Literature DB >> 21581671

3-Amino-5-bromo-2-iodo-pyridine.

Kevin D Bunker, Neal W Sach, Seiji Nukui, Arnold L Rheingold, Alex Yanovsky.   

Abstract

The reaction of 3-amino-5-bromo-pyridine with N-iodo-succinimide in the presence of acetic acid produces the title compound, C(5)H(4)BrIN, with an iodo substituent in position 2 of the pyridine ring. The crystal structure features rather weak inter-molecular N-H⋯N hydrogen bonds linking the mol-ecules into chains along the z axis of the crystal.

Entities:  

Year:  2008        PMID: 21581671      PMCID: PMC2967947          DOI: 10.1107/S1600536808040452

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures of ortho-iodo­anilines, see: McWilliam et al. (2001 ▶); Sandor & Foxman (2000 ▶); Parkin et al. (2005 ▶).

Experimental

Crystal data

C5H4BrIN2 M = 298.90 Monoclinic, a = 4.0983 (12) Å b = 15.172 (4) Å c = 12.038 (3) Å β = 90.152 (5)° V = 748.5 (3) Å3 Z = 4 Mo Kα radiation μ = 9.53 mm−1 T = 100 (2) K 0.40 × 0.33 × 0.04 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.234, T max = 0.557 3783 measured reflections 1251 independent reflections 1086 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.082 S = 1.05 1251 reflections 82 parameters H-atom parameters constrained Δρmax = 1.33 e Å−3 Δρmin = −0.92 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808040452/rz2275sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808040452/rz2275Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H4BrIN2F(000) = 544
Mr = 298.90Dx = 2.652 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2536 reflections
a = 4.0983 (12) Åθ = 2.7–25.3°
b = 15.172 (4) ŵ = 9.53 mm1
c = 12.038 (3) ÅT = 100 K
β = 90.152 (5)°Plate, colourless
V = 748.5 (3) Å30.40 × 0.33 × 0.04 mm
Z = 4
Bruker APEXII CCD diffractometer1251 independent reflections
Radiation source: fine-focus sealed tube1086 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 25.3°, θmin = 2.2°
Absorption correction: analytical (SADABS; Bruker, 2001)h = −4→1
Tmin = 0.234, Tmax = 0.557k = −17→18
3783 measured reflectionsl = −10→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.037P)2 + 2.524P] where P = (Fo2 + 2Fc2)/3
1251 reflections(Δ/σ)max = 0.003
82 parametersΔρmax = 1.33 e Å3
0 restraintsΔρmin = −0.92 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.18405 (10)0.37509 (3)0.48761 (3)0.02516 (17)
Br1−0.56202 (16)0.01782 (4)0.28399 (5)0.0266 (2)
N2−0.0278 (15)0.3306 (4)0.2326 (4)0.0298 (13)
H2A−0.08080.32820.16170.036*
H2B0.07600.37690.25890.036*
N1−0.1133 (14)0.1994 (4)0.4858 (4)0.0264 (13)
C2−0.2684 (18)0.1278 (4)0.4470 (6)0.0264 (15)
H2−0.32430.08150.49650.032*
C1−0.0390 (15)0.2637 (5)0.4165 (5)0.0242 (14)
C5−0.1071 (15)0.2622 (5)0.3019 (5)0.0227 (14)
C3−0.3480 (16)0.1208 (4)0.3350 (5)0.0221 (14)
C4−0.2713 (15)0.1878 (4)0.2636 (5)0.0213 (14)
H4−0.33030.18340.18740.026*
U11U22U33U12U13U23
I10.0244 (3)0.0324 (3)0.0187 (3)−0.00094 (16)−0.00522 (18)−0.00340 (17)
Br10.0285 (4)0.0274 (4)0.0238 (4)−0.0007 (3)−0.0039 (3)−0.0027 (3)
N20.044 (4)0.029 (3)0.016 (3)−0.002 (3)−0.008 (3)−0.001 (2)
N10.035 (3)0.030 (3)0.015 (3)0.002 (2)−0.005 (2)0.002 (2)
C20.035 (4)0.024 (4)0.020 (3)0.000 (3)−0.007 (3)0.002 (3)
C10.017 (3)0.036 (4)0.020 (3)0.004 (3)−0.006 (3)−0.008 (3)
C50.017 (3)0.035 (4)0.016 (3)0.006 (3)−0.001 (2)−0.002 (3)
C30.021 (4)0.027 (4)0.018 (3)0.005 (3)−0.001 (3)−0.001 (3)
C40.021 (3)0.033 (4)0.011 (3)0.007 (3)−0.005 (2)−0.006 (3)
I1—C12.102 (7)C2—C31.390 (9)
Br1—C31.894 (7)C2—H20.9500
N2—C51.371 (9)C1—C51.407 (9)
N2—H2A0.8800C5—C41.393 (9)
N2—H2B0.8800C3—C41.368 (9)
N1—C11.320 (9)C4—H40.9500
N1—C21.342 (9)
C5—N2—H2A120.0N2—C5—C4121.8 (5)
C5—N2—H2B120.0N2—C5—C1122.6 (6)
H2A—N2—H2B120.0C4—C5—C1115.6 (6)
C1—N1—C2119.3 (5)C4—C3—C2119.9 (6)
N1—C2—C3120.6 (6)C4—C3—Br1121.1 (5)
N1—C2—H2119.7C2—C3—Br1119.0 (5)
C3—C2—H2119.7C3—C4—C5120.4 (6)
N1—C1—C5124.2 (6)C3—C4—H4119.8
N1—C1—I1116.0 (4)C5—C4—H4119.8
C5—C1—I1119.8 (5)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N1i0.882.163.025 (8)166
N2—H2B···I10.882.793.259 (5)115
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯N1i0.882.163.025 (8)166
N2—H2B⋯I10.882.793.259 (5)115

Symmetry code: (i) .

  2 in total

1.  Triclinic and orthorhombic polymorphs of 2-iodo-4-nitroaniline: interplay of hydrogen bonds, nitro...I interactions and aromatic pi-pi-stacking interactions.

Authors:  S A McWilliam; J M Skakle; J N Low; J L Wardell; S J Garden; A C Pinto; J C Torres; C Glidewell
Journal:  Acta Crystallogr C       Date:  2001-08-09       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  1 in total

1.  2-Iodo-3-meth-oxy-6-methyl-pyridine.

Authors:  Wenbo Guo; Xueqin Liu; Long Li; Dongsheng Deng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28
  1 in total

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