Literature DB >> 21578892

2-[(4-Hydroxy-phen-yl)diazen-yl]benzoic acid-N,N'-bis-(4-pyridylmeth-yl)oxamide (2/1).

Hadi D Arman, Tyler Miller, Pavel Poplaukhin, Edward R T Tiekink.   

Abstract

The asymmetric unit of the title co-crystal, 2C(13)H(10)N(2)O(3)·C(14)H(14)N(4)O(2), comprises one mol-ecule of 2-(4-hydroxy-phenyl-diazen-yl)benzoic acid and half of an N,N'-bis-(4-pyridylmeth-yl)oxamide mol-ecule as the latter is disposed about an inversion centre. The most notable feature of the crystal structure is the formation of supra-molecular chains arising from hydr-oxy-pyridine O-H⋯N contacts and amide-hydr-oxy C-H⋯O contacts. These give rise to 40-membered {⋯OH⋯NNC(4)OH⋯NC(4)NC(2)NH}(2) synthons, generating supra-molecular chains along [01]. The chains are connected into a two-dimensional array via C-H⋯π inter-actions. Layers, with a step-ladder topology, are consolidated into the crystal structure via further C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21578892      PMCID: PMC2971824          DOI: 10.1107/S1600536809049228

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the co-crystallization of active pharmaceutical agents and a discussion on the definition of a co-crystal, see: Shan & Zaworotko (2008 ▶); Zukerman-Schpector & Tiekink (2008 ▶). For hydrogen-bonding considerations, see: Etter (1990 ▶). For related studies on co-crystal formation, see: Broker & Tiekink (2007 ▶); Broker et al. (2008 ▶); Ellis et al. (2009 ▶). For a related salt with 2-(4-hydroxy­phenyl­diazen­yl)n class="Chemical">benzoic acid, see: Corlette & Tiekink (2009 ▶). For related structures, see: Lee & Wang (2007 ▶); Qian & Huang (2005 ▶). For co-crystals of N,N′-bis­(4-pyridylmeth­yl)oxamide, see: Wilhelm et al. (2008 ▶).

Experimental

Crystal data

2C13H10N2O3·C14H14N4O2 M = 754.75 Triclinic, a = 5.523 (3) Å b = 11.132 (4) Å c = 15.066 (7) Å α = 72.748 (16)° β = 88.92 (2)° γ = 79.43 (2)° V = 869.0 (7) Å3 Z = 1 Mo Kα radiation μ = 0.10 mm−1 T = 98 K 0.55 × 0.31 × 0.20 mm

Data collection

Rigaku AFC12K/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.821, T max = 1 6882 measured reflections 3945 independent reflections 3477 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.143 S = 1.08 3945 reflections 262 parameters 3 restraints H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and DIAMOND Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809049228/hg2597sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809049228/hg2597Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C13H10N2O3·C14H14N4O2Z = 1
Mr = 754.75F(000) = 394
Triclinic, P1Dx = 1.442 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71069 Å
a = 5.523 (3) ÅCell parameters from 3695 reflections
b = 11.132 (4) Åθ = 2.0–40.6°
c = 15.066 (7) ŵ = 0.10 mm1
α = 72.748 (16)°T = 98 K
β = 88.92 (2)°Block, red
γ = 79.43 (2)°0.55 × 0.31 × 0.20 mm
V = 869.0 (7) Å3
Rigaku AFC12K/SATURN724 diffractometer3945 independent reflections
Radiation source: fine-focus sealed tube3477 reflections with I > 2σ(I)
graphiteRint = 0.033
ω scansθmax = 27.5°, θmin = 2.0°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −6→7
Tmin = 0.821, Tmax = 1k = −14→14
6882 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0675P)2 + 0.3418P] where P = (Fo2 + 2Fc2)/3
3945 reflections(Δ/σ)max < 0.001
262 parametersΔρmax = 0.32 e Å3
3 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.0476 (2)−0.00128 (11)0.38418 (8)0.0287 (3)
O20.7677 (2)0.68650 (12)0.51985 (8)0.0293 (3)
O30.5687 (2)0.83724 (11)0.40195 (8)0.0264 (3)
H1O0.58730.86730.34460.040*
O40.0094 (2)1.33786 (11)−0.01572 (8)0.0298 (3)
H2O0.05241.3892−0.06380.045*
N10.8421 (3)0.48340 (13)0.16157 (9)0.0268 (3)
N20.7290 (2)0.10782 (13)0.44396 (9)0.0238 (3)
H1N0.67000.11790.49650.029*
N30.7538 (2)0.87835 (12)0.24039 (9)0.0222 (3)
N40.7707 (2)0.94258 (12)0.15667 (9)0.0230 (3)
C10.6793 (3)0.27688 (14)0.28993 (10)0.0216 (3)
C20.5771 (3)0.32819 (15)0.19998 (11)0.0267 (3)
H20.44920.29400.18050.032*
C30.6641 (3)0.42965 (16)0.13916 (11)0.0299 (4)
H30.59300.46310.07780.036*
C40.9377 (3)0.43484 (15)0.24874 (11)0.0264 (3)
H41.06280.47230.26660.032*
C50.8634 (3)0.33260 (15)0.31435 (11)0.0252 (3)
H50.93760.30110.37520.030*
C60.5892 (3)0.16366 (15)0.35621 (11)0.0244 (3)
H6A0.41500.19140.36930.029*
H6B0.59440.09660.32500.029*
C70.9439 (3)0.02757 (14)0.44999 (10)0.0221 (3)
C80.9611 (3)0.71595 (14)0.37441 (10)0.0208 (3)
C90.9623 (3)0.78081 (14)0.27915 (10)0.0212 (3)
C101.1625 (3)0.74920 (15)0.22689 (11)0.0258 (3)
H101.16360.79290.16240.031*
C111.3589 (3)0.65398 (16)0.26952 (12)0.0279 (4)
H111.49540.63300.23410.034*
C121.3583 (3)0.58874 (15)0.36356 (12)0.0265 (3)
H121.49320.52290.39220.032*
C131.1604 (3)0.61987 (15)0.41561 (11)0.0237 (3)
H131.16060.57530.48000.028*
C140.7599 (3)0.74462 (14)0.43795 (10)0.0222 (3)
C150.5672 (3)1.03918 (14)0.11805 (10)0.0224 (3)
C160.3394 (3)1.05976 (15)0.15929 (11)0.0233 (3)
H160.31151.00470.21860.028*
C170.1561 (3)1.16005 (15)0.11346 (11)0.0251 (3)
H170.00181.17370.14140.030*
C180.1956 (3)1.24225 (15)0.02580 (11)0.0238 (3)
C190.4230 (3)1.22184 (16)−0.01495 (11)0.0263 (3)
H190.45201.2777−0.07380.032*
C200.6053 (3)1.12046 (15)0.03040 (11)0.0252 (3)
H200.75821.10570.00180.030*
U11U22U33U12U13U23
O10.0295 (6)0.0338 (6)0.0211 (6)0.0007 (5)0.0015 (5)−0.0098 (5)
O20.0308 (6)0.0344 (6)0.0189 (6)−0.0012 (5)0.0003 (5)−0.0055 (5)
O30.0263 (6)0.0291 (6)0.0201 (5)0.0010 (5)0.0023 (4)−0.0057 (5)
O40.0258 (6)0.0295 (6)0.0262 (6)−0.0009 (5)−0.0010 (5)0.0011 (5)
N10.0282 (7)0.0257 (6)0.0233 (7)−0.0017 (5)0.0007 (5)−0.0045 (5)
N20.0236 (7)0.0273 (6)0.0176 (6)−0.0007 (5)0.0000 (5)−0.0048 (5)
N30.0253 (7)0.0217 (6)0.0183 (6)−0.0034 (5)−0.0022 (5)−0.0044 (5)
N40.0268 (7)0.0230 (6)0.0194 (6)−0.0057 (5)−0.0020 (5)−0.0059 (5)
C10.0209 (7)0.0220 (7)0.0210 (7)0.0009 (5)0.0006 (6)−0.0080 (6)
C20.0292 (8)0.0264 (7)0.0245 (8)−0.0034 (6)−0.0056 (6)−0.0085 (6)
C30.0388 (9)0.0290 (8)0.0190 (7)−0.0020 (7)−0.0059 (6)−0.0049 (6)
C40.0223 (7)0.0269 (7)0.0280 (8)−0.0019 (6)−0.0033 (6)−0.0066 (6)
C50.0237 (8)0.0273 (7)0.0212 (7)−0.0008 (6)−0.0038 (6)−0.0045 (6)
C60.0237 (7)0.0269 (7)0.0207 (7)−0.0029 (6)−0.0025 (6)−0.0053 (6)
C70.0233 (7)0.0217 (7)0.0212 (8)−0.0055 (6)0.0013 (6)−0.0054 (6)
C80.0211 (7)0.0209 (7)0.0211 (7)−0.0044 (5)−0.0010 (6)−0.0071 (6)
C90.0226 (7)0.0206 (7)0.0204 (7)−0.0044 (6)−0.0025 (6)−0.0059 (6)
C100.0289 (8)0.0261 (7)0.0205 (7)−0.0036 (6)0.0026 (6)−0.0054 (6)
C110.0249 (8)0.0308 (8)0.0290 (8)−0.0035 (6)0.0046 (6)−0.0114 (7)
C120.0231 (8)0.0269 (7)0.0277 (8)0.0003 (6)−0.0043 (6)−0.0079 (6)
C130.0249 (8)0.0254 (7)0.0204 (7)−0.0045 (6)−0.0031 (6)−0.0064 (6)
C140.0252 (8)0.0222 (7)0.0198 (7)−0.0052 (6)−0.0013 (6)−0.0067 (6)
C150.0267 (8)0.0228 (7)0.0186 (7)−0.0059 (6)−0.0023 (6)−0.0063 (6)
C160.0253 (8)0.0247 (7)0.0197 (7)−0.0073 (6)−0.0008 (6)−0.0045 (6)
C170.0222 (7)0.0274 (7)0.0248 (8)−0.0061 (6)0.0004 (6)−0.0055 (6)
C180.0246 (8)0.0238 (7)0.0226 (7)−0.0045 (6)−0.0042 (6)−0.0059 (6)
C190.0290 (8)0.0281 (8)0.0186 (7)−0.0058 (6)0.0002 (6)−0.0016 (6)
C200.0256 (8)0.0290 (8)0.0201 (7)−0.0046 (6)0.0003 (6)−0.0063 (6)
O1—C71.2304 (19)C6—H6B0.9900
O2—C141.2088 (19)C7—C7i1.542 (3)
O3—C141.3276 (19)C8—C131.393 (2)
O3—H1O0.8402C8—C91.403 (2)
O4—C181.3450 (19)C8—C141.505 (2)
O4—H2O0.8401C9—C101.398 (2)
N1—C31.337 (2)C10—C111.383 (2)
N1—C41.340 (2)C10—H100.9500
N2—C71.335 (2)C11—C121.387 (2)
N2—C61.451 (2)C11—H110.9500
N2—H1N0.8801C12—C131.386 (2)
N3—N41.2632 (19)C12—H120.9500
N3—C91.427 (2)C13—H130.9500
N4—C151.403 (2)C15—C201.399 (2)
C1—C21.390 (2)C15—C161.404 (2)
C1—C51.391 (2)C16—C171.379 (2)
C1—C61.516 (2)C16—H160.9500
C2—C31.384 (2)C17—C181.405 (2)
C2—H20.9500C17—H170.9500
C3—H30.9500C18—C191.398 (2)
C4—C51.389 (2)C19—C201.381 (2)
C4—H40.9500C19—H190.9500
C5—H50.9500C20—H200.9500
C6—H6A0.9900
C14—O3—H1O108.7C10—C9—N3123.07 (14)
C18—O4—H2O112.5C8—C9—N3116.96 (13)
C3—N1—C4116.75 (14)C11—C10—C9119.74 (15)
C7—N2—C6120.86 (13)C11—C10—H10120.1
C7—N2—H1N116.6C9—C10—H10120.1
C6—N2—H1N122.1C10—C11—C12120.63 (15)
N4—N3—C9115.26 (13)C10—C11—H11119.7
N3—N4—C15115.72 (13)C12—C11—H11119.7
C2—C1—C5117.49 (14)C13—C12—C11119.81 (15)
C2—C1—C6119.45 (14)C13—C12—H12120.1
C5—C1—C6123.05 (14)C11—C12—H12120.1
C3—C2—C1119.17 (16)C12—C13—C8120.65 (15)
C3—C2—H2120.4C12—C13—H13119.7
C1—C2—H2120.4C8—C13—H13119.7
N1—C3—C2123.90 (15)O2—C14—O3119.58 (14)
N1—C3—H3118.0O2—C14—C8122.19 (14)
C2—C3—H3118.0O3—C14—C8118.23 (13)
N1—C4—C5123.41 (16)C20—C15—N4114.33 (14)
N1—C4—H4118.3C20—C15—C16119.49 (14)
C5—C4—H4118.3N4—C15—C16126.18 (14)
C4—C5—C1119.28 (15)C17—C16—C15119.85 (15)
C4—C5—H5120.4C17—C16—H16120.1
C1—C5—H5120.4C15—C16—H16120.1
N2—C6—C1114.78 (14)C16—C17—C18120.54 (15)
N2—C6—H6A108.6C16—C17—H17119.7
C1—C6—H6A108.6C18—C17—H17119.7
N2—C6—H6B108.6O4—C18—C19122.69 (14)
C1—C6—H6B108.6O4—C18—C17117.82 (14)
H6A—C6—H6B107.5C19—C18—C17119.49 (14)
O1—C7—N2125.14 (15)C20—C19—C18119.95 (15)
O1—C7—C7i121.86 (17)C20—C19—H19120.0
N2—C7—C7i112.99 (16)C18—C19—H19120.0
C13—C8—C9119.19 (14)C19—C20—C15120.66 (15)
C13—C8—C14116.22 (14)C19—C20—H20119.7
C9—C8—C14124.57 (14)C15—C20—H20119.7
C10—C9—C8119.98 (14)
C9—N3—N4—C15−179.67 (12)C9—C10—C11—C120.5 (3)
C5—C1—C2—C30.9 (2)C10—C11—C12—C13−0.6 (3)
C6—C1—C2—C3−178.53 (14)C11—C12—C13—C80.2 (2)
C4—N1—C3—C2−0.5 (2)C9—C8—C13—C120.3 (2)
C1—C2—C3—N1−0.5 (3)C14—C8—C13—C12−178.21 (14)
C3—N1—C4—C50.9 (2)C13—C8—C14—O2−1.2 (2)
N1—C4—C5—C1−0.5 (2)C9—C8—C14—O2−179.56 (15)
C2—C1—C5—C4−0.5 (2)C13—C8—C14—O3178.70 (14)
C6—C1—C5—C4178.93 (14)C9—C8—C14—O30.3 (2)
C7—N2—C6—C1−79.82 (19)N3—N4—C15—C20171.10 (13)
C2—C1—C6—N2172.60 (14)N3—N4—C15—C16−8.5 (2)
C5—C1—C6—N2−6.8 (2)C20—C15—C16—C17−0.4 (2)
C6—N2—C7—O13.7 (2)N4—C15—C16—C17179.19 (15)
C6—N2—C7—C7i−176.57 (15)C15—C16—C17—C18−0.2 (2)
C13—C8—C9—C10−0.4 (2)C16—C17—C18—O4179.60 (14)
C14—C8—C9—C10178.01 (14)C16—C17—C18—C190.0 (2)
C13—C8—C9—N3180.00 (13)O4—C18—C19—C20−178.74 (15)
C14—C8—C9—N3−1.6 (2)C17—C18—C19—C200.9 (2)
N4—N3—C9—C10−5.8 (2)C18—C19—C20—C15−1.5 (2)
N4—N3—C9—C8173.84 (13)N4—C15—C20—C19−178.39 (14)
C8—C9—C10—C110.0 (2)C16—C15—C20—C191.2 (2)
N3—C9—C10—C11179.58 (15)
D—H···AD—HH···AD···AD—H···A
O3—H1o···N30.841.792.568 (2)154
N2—H1n···O3ii0.882.112.966 (2)163
O4—H2o···N1iii0.841.882.720 (2)173
C5—H5···O2iv0.952.343.187 (3)148
C6—H6a···O2ii0.992.543.265 (3)130
C2—H2···Cg(3)v0.952.763.542 (3)140
C4—H4···Cg(2)0.952.873.684 (3)145
C11—H11···Cg(1)vi0.952.963.642 (3)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H1o⋯N30.841.792.568 (2)154
N2—H1n⋯O3i 0.882.112.966 (2)163
O4—H2o⋯N1ii 0.841.882.720 (2)173
C5—H5⋯O2iii 0.952.343.187 (3)148
C6—H6a⋯O2i 0.992.543.265 (3)130
C2—H2⋯Cg(3)iv 0.952.763.542 (3)140
C4—H4⋯Cg(2)0.952.873.684 (3)145
C11—H11⋯Cg(1)v 0.952.963.642 (3)130

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) . Cg(1), Cg(2) and Cg(3) are the centroids of the N1,C2–C5, C8–C13 and C15–C20 rings, respectively.

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  The role of cocrystals in pharmaceutical science.

Authors:  Ning Shan; Michael J Zaworotko
Journal:  Drug Discov Today       Date:  2008-04-22       Impact factor: 7.851

3.  Hydrogen-bonded supramolecule of N,N'-bis(4-pyridylmethyl)oxalamide and a zigzag chain structure of catena-poly[[[dichloridocobalt(II)]-mu-N,N'-bis(4-pyridylmethyl)oxalamide-kappa2N4:N4'] hemihydrate].

Authors:  Gene-Hsiang Lee; Hsin-Ta Wang
Journal:  Acta Crystallogr C       Date:  2007-04-21       Impact factor: 1.172

4.  Pressure-induced polymerization of diiodobutadiyne in assembled cocrystals.

Authors:  Christopher Wilhelm; Stephen A Boyd; Samrat Chawda; Frank W Fowler; Nancy S Goroff; Gary P Halada; Clare P Grey; Joseph W Lauher; Liang Luo; C David Martin; John B Parise; Cathy Tarabrella; Jeffrey A Webb
Journal:  J Am Chem Soc       Date:  2008-03-12       Impact factor: 15.419

  4 in total
  3 in total

1.  4-(Dimethyl-amino)pyridinium 2-(4-hydroxy-phenyl-diazen-yl)benzoate.

Authors:  Hadi D Arman; Tyler Miller; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28

2.  The 1:2 co-crystal formed between N,N'-bis(pyridin-4-ylmeth-yl)ethanedi-amide and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study.

Authors:  Sang Loon Tan; Edward R T Tiekink
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2020-01-01

3.  A 2:1 co-crystal of 2-methyl-benzoic acid and N,N'-bis-(pyridin-4-ylmeth-yl)ethanedi-amide: crystal structure and Hirshfeld surface analysis.

Authors:  Sabrina Syed; Mukesh M Jotani; Siti Nadiah Abdul Halim; Edward R T Tiekink
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-02-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.