| Literature DB >> 21578892 |
Hadi D Arman, Tyler Miller, Pavel Poplaukhin, Edward R T Tiekink.
Abstract
The asymmetric unit of the title co-crystal, 2C(13)H(10)N(2)O(3)·C(14)H(14)N(4)O(2), comprises one mol-ecule of 2-(4-hydroxy-phenyl-diazen-yl)benzoic acid and half of an N,N'-bis-(4-pyridylmeth-yl)oxamide mol-ecule as the latter is disposed about an inversion centre. The most notable feature of the crystal structure is the formation of supra-molecular chains arising from hydr-oxy-pyridine O-H⋯N contacts and amide-hydr-oxy C-H⋯O contacts. These give rise to 40-membered {⋯OH⋯NNC(4)OH⋯NC(4)NC(2)NH}(2) synthons, generating supra-molecular chains along [01]. The chains are connected into a two-dimensional array via C-H⋯π inter-actions. Layers, with a step-ladder topology, are consolidated into the crystal structure via further C-H⋯π inter-actions.Entities:
Year: 2009 PMID: 21578892 PMCID: PMC2971824 DOI: 10.1107/S1600536809049228
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C13H10N2O3·C14H14N4O2 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3695 reflections | |
| θ = 2.0–40.6° | |
| µ = 0.10 mm−1 | |
| α = 72.748 (16)° | |
| β = 88.92 (2)° | Block, red |
| γ = 79.43 (2)° | 0.55 × 0.31 × 0.20 mm |
| Rigaku AFC12K/SATURN724 diffractometer | 3945 independent reflections |
| Radiation source: fine-focus sealed tube | 3477 reflections with |
| graphite | |
| ω scans | θmax = 27.5°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 6882 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3945 reflections | (Δ/σ)max < 0.001 |
| 262 parameters | Δρmax = 0.32 e Å−3 |
| 3 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 1.0476 (2) | −0.00128 (11) | 0.38418 (8) | 0.0287 (3) | |
| O2 | 0.7677 (2) | 0.68650 (12) | 0.51985 (8) | 0.0293 (3) | |
| O3 | 0.5687 (2) | 0.83724 (11) | 0.40195 (8) | 0.0264 (3) | |
| H1O | 0.5873 | 0.8673 | 0.3446 | 0.040* | |
| O4 | 0.0094 (2) | 1.33786 (11) | −0.01572 (8) | 0.0298 (3) | |
| H2O | 0.0524 | 1.3892 | −0.0638 | 0.045* | |
| N1 | 0.8421 (3) | 0.48340 (13) | 0.16157 (9) | 0.0268 (3) | |
| N2 | 0.7290 (2) | 0.10782 (13) | 0.44396 (9) | 0.0238 (3) | |
| H1N | 0.6700 | 0.1179 | 0.4965 | 0.029* | |
| N3 | 0.7538 (2) | 0.87835 (12) | 0.24039 (9) | 0.0222 (3) | |
| N4 | 0.7707 (2) | 0.94258 (12) | 0.15667 (9) | 0.0230 (3) | |
| C1 | 0.6793 (3) | 0.27688 (14) | 0.28993 (10) | 0.0216 (3) | |
| C2 | 0.5771 (3) | 0.32819 (15) | 0.19998 (11) | 0.0267 (3) | |
| H2 | 0.4492 | 0.2940 | 0.1805 | 0.032* | |
| C3 | 0.6641 (3) | 0.42965 (16) | 0.13916 (11) | 0.0299 (4) | |
| H3 | 0.5930 | 0.4631 | 0.0778 | 0.036* | |
| C4 | 0.9377 (3) | 0.43484 (15) | 0.24874 (11) | 0.0264 (3) | |
| H4 | 1.0628 | 0.4723 | 0.2666 | 0.032* | |
| C5 | 0.8634 (3) | 0.33260 (15) | 0.31435 (11) | 0.0252 (3) | |
| H5 | 0.9376 | 0.3011 | 0.3752 | 0.030* | |
| C6 | 0.5892 (3) | 0.16366 (15) | 0.35621 (11) | 0.0244 (3) | |
| H6A | 0.4150 | 0.1914 | 0.3693 | 0.029* | |
| H6B | 0.5944 | 0.0966 | 0.3250 | 0.029* | |
| C7 | 0.9439 (3) | 0.02757 (14) | 0.44999 (10) | 0.0221 (3) | |
| C8 | 0.9611 (3) | 0.71595 (14) | 0.37441 (10) | 0.0208 (3) | |
| C9 | 0.9623 (3) | 0.78081 (14) | 0.27915 (10) | 0.0212 (3) | |
| C10 | 1.1625 (3) | 0.74920 (15) | 0.22689 (11) | 0.0258 (3) | |
| H10 | 1.1636 | 0.7929 | 0.1624 | 0.031* | |
| C11 | 1.3589 (3) | 0.65398 (16) | 0.26952 (12) | 0.0279 (4) | |
| H11 | 1.4954 | 0.6330 | 0.2341 | 0.034* | |
| C12 | 1.3583 (3) | 0.58874 (15) | 0.36356 (12) | 0.0265 (3) | |
| H12 | 1.4932 | 0.5229 | 0.3922 | 0.032* | |
| C13 | 1.1604 (3) | 0.61987 (15) | 0.41561 (11) | 0.0237 (3) | |
| H13 | 1.1606 | 0.5753 | 0.4800 | 0.028* | |
| C14 | 0.7599 (3) | 0.74462 (14) | 0.43795 (10) | 0.0222 (3) | |
| C15 | 0.5672 (3) | 1.03918 (14) | 0.11805 (10) | 0.0224 (3) | |
| C16 | 0.3394 (3) | 1.05976 (15) | 0.15929 (11) | 0.0233 (3) | |
| H16 | 0.3115 | 1.0047 | 0.2186 | 0.028* | |
| C17 | 0.1561 (3) | 1.16005 (15) | 0.11346 (11) | 0.0251 (3) | |
| H17 | 0.0018 | 1.1737 | 0.1414 | 0.030* | |
| C18 | 0.1956 (3) | 1.24225 (15) | 0.02580 (11) | 0.0238 (3) | |
| C19 | 0.4230 (3) | 1.22184 (16) | −0.01495 (11) | 0.0263 (3) | |
| H19 | 0.4520 | 1.2777 | −0.0738 | 0.032* | |
| C20 | 0.6053 (3) | 1.12046 (15) | 0.03040 (11) | 0.0252 (3) | |
| H20 | 0.7582 | 1.1057 | 0.0018 | 0.030* |
| O1 | 0.0295 (6) | 0.0338 (6) | 0.0211 (6) | 0.0007 (5) | 0.0015 (5) | −0.0098 (5) |
| O2 | 0.0308 (6) | 0.0344 (6) | 0.0189 (6) | −0.0012 (5) | 0.0003 (5) | −0.0055 (5) |
| O3 | 0.0263 (6) | 0.0291 (6) | 0.0201 (5) | 0.0010 (5) | 0.0023 (4) | −0.0057 (5) |
| O4 | 0.0258 (6) | 0.0295 (6) | 0.0262 (6) | −0.0009 (5) | −0.0010 (5) | 0.0011 (5) |
| N1 | 0.0282 (7) | 0.0257 (6) | 0.0233 (7) | −0.0017 (5) | 0.0007 (5) | −0.0045 (5) |
| N2 | 0.0236 (7) | 0.0273 (6) | 0.0176 (6) | −0.0007 (5) | 0.0000 (5) | −0.0048 (5) |
| N3 | 0.0253 (7) | 0.0217 (6) | 0.0183 (6) | −0.0034 (5) | −0.0022 (5) | −0.0044 (5) |
| N4 | 0.0268 (7) | 0.0230 (6) | 0.0194 (6) | −0.0057 (5) | −0.0020 (5) | −0.0059 (5) |
| C1 | 0.0209 (7) | 0.0220 (7) | 0.0210 (7) | 0.0009 (5) | 0.0006 (6) | −0.0080 (6) |
| C2 | 0.0292 (8) | 0.0264 (7) | 0.0245 (8) | −0.0034 (6) | −0.0056 (6) | −0.0085 (6) |
| C3 | 0.0388 (9) | 0.0290 (8) | 0.0190 (7) | −0.0020 (7) | −0.0059 (6) | −0.0049 (6) |
| C4 | 0.0223 (7) | 0.0269 (7) | 0.0280 (8) | −0.0019 (6) | −0.0033 (6) | −0.0066 (6) |
| C5 | 0.0237 (8) | 0.0273 (7) | 0.0212 (7) | −0.0008 (6) | −0.0038 (6) | −0.0045 (6) |
| C6 | 0.0237 (7) | 0.0269 (7) | 0.0207 (7) | −0.0029 (6) | −0.0025 (6) | −0.0053 (6) |
| C7 | 0.0233 (7) | 0.0217 (7) | 0.0212 (8) | −0.0055 (6) | 0.0013 (6) | −0.0054 (6) |
| C8 | 0.0211 (7) | 0.0209 (7) | 0.0211 (7) | −0.0044 (5) | −0.0010 (6) | −0.0071 (6) |
| C9 | 0.0226 (7) | 0.0206 (7) | 0.0204 (7) | −0.0044 (6) | −0.0025 (6) | −0.0059 (6) |
| C10 | 0.0289 (8) | 0.0261 (7) | 0.0205 (7) | −0.0036 (6) | 0.0026 (6) | −0.0054 (6) |
| C11 | 0.0249 (8) | 0.0308 (8) | 0.0290 (8) | −0.0035 (6) | 0.0046 (6) | −0.0114 (7) |
| C12 | 0.0231 (8) | 0.0269 (7) | 0.0277 (8) | 0.0003 (6) | −0.0043 (6) | −0.0079 (6) |
| C13 | 0.0249 (8) | 0.0254 (7) | 0.0204 (7) | −0.0045 (6) | −0.0031 (6) | −0.0064 (6) |
| C14 | 0.0252 (8) | 0.0222 (7) | 0.0198 (7) | −0.0052 (6) | −0.0013 (6) | −0.0067 (6) |
| C15 | 0.0267 (8) | 0.0228 (7) | 0.0186 (7) | −0.0059 (6) | −0.0023 (6) | −0.0063 (6) |
| C16 | 0.0253 (8) | 0.0247 (7) | 0.0197 (7) | −0.0073 (6) | −0.0008 (6) | −0.0045 (6) |
| C17 | 0.0222 (7) | 0.0274 (7) | 0.0248 (8) | −0.0061 (6) | 0.0004 (6) | −0.0055 (6) |
| C18 | 0.0246 (8) | 0.0238 (7) | 0.0226 (7) | −0.0045 (6) | −0.0042 (6) | −0.0059 (6) |
| C19 | 0.0290 (8) | 0.0281 (8) | 0.0186 (7) | −0.0058 (6) | 0.0002 (6) | −0.0016 (6) |
| C20 | 0.0256 (8) | 0.0290 (8) | 0.0201 (7) | −0.0046 (6) | 0.0003 (6) | −0.0063 (6) |
| O1—C7 | 1.2304 (19) | C6—H6B | 0.9900 |
| O2—C14 | 1.2088 (19) | C7—C7i | 1.542 (3) |
| O3—C14 | 1.3276 (19) | C8—C13 | 1.393 (2) |
| O3—H1O | 0.8402 | C8—C9 | 1.403 (2) |
| O4—C18 | 1.3450 (19) | C8—C14 | 1.505 (2) |
| O4—H2O | 0.8401 | C9—C10 | 1.398 (2) |
| N1—C3 | 1.337 (2) | C10—C11 | 1.383 (2) |
| N1—C4 | 1.340 (2) | C10—H10 | 0.9500 |
| N2—C7 | 1.335 (2) | C11—C12 | 1.387 (2) |
| N2—C6 | 1.451 (2) | C11—H11 | 0.9500 |
| N2—H1N | 0.8801 | C12—C13 | 1.386 (2) |
| N3—N4 | 1.2632 (19) | C12—H12 | 0.9500 |
| N3—C9 | 1.427 (2) | C13—H13 | 0.9500 |
| N4—C15 | 1.403 (2) | C15—C20 | 1.399 (2) |
| C1—C2 | 1.390 (2) | C15—C16 | 1.404 (2) |
| C1—C5 | 1.391 (2) | C16—C17 | 1.379 (2) |
| C1—C6 | 1.516 (2) | C16—H16 | 0.9500 |
| C2—C3 | 1.384 (2) | C17—C18 | 1.405 (2) |
| C2—H2 | 0.9500 | C17—H17 | 0.9500 |
| C3—H3 | 0.9500 | C18—C19 | 1.398 (2) |
| C4—C5 | 1.389 (2) | C19—C20 | 1.381 (2) |
| C4—H4 | 0.9500 | C19—H19 | 0.9500 |
| C5—H5 | 0.9500 | C20—H20 | 0.9500 |
| C6—H6A | 0.9900 | ||
| C14—O3—H1O | 108.7 | C10—C9—N3 | 123.07 (14) |
| C18—O4—H2O | 112.5 | C8—C9—N3 | 116.96 (13) |
| C3—N1—C4 | 116.75 (14) | C11—C10—C9 | 119.74 (15) |
| C7—N2—C6 | 120.86 (13) | C11—C10—H10 | 120.1 |
| C7—N2—H1N | 116.6 | C9—C10—H10 | 120.1 |
| C6—N2—H1N | 122.1 | C10—C11—C12 | 120.63 (15) |
| N4—N3—C9 | 115.26 (13) | C10—C11—H11 | 119.7 |
| N3—N4—C15 | 115.72 (13) | C12—C11—H11 | 119.7 |
| C2—C1—C5 | 117.49 (14) | C13—C12—C11 | 119.81 (15) |
| C2—C1—C6 | 119.45 (14) | C13—C12—H12 | 120.1 |
| C5—C1—C6 | 123.05 (14) | C11—C12—H12 | 120.1 |
| C3—C2—C1 | 119.17 (16) | C12—C13—C8 | 120.65 (15) |
| C3—C2—H2 | 120.4 | C12—C13—H13 | 119.7 |
| C1—C2—H2 | 120.4 | C8—C13—H13 | 119.7 |
| N1—C3—C2 | 123.90 (15) | O2—C14—O3 | 119.58 (14) |
| N1—C3—H3 | 118.0 | O2—C14—C8 | 122.19 (14) |
| C2—C3—H3 | 118.0 | O3—C14—C8 | 118.23 (13) |
| N1—C4—C5 | 123.41 (16) | C20—C15—N4 | 114.33 (14) |
| N1—C4—H4 | 118.3 | C20—C15—C16 | 119.49 (14) |
| C5—C4—H4 | 118.3 | N4—C15—C16 | 126.18 (14) |
| C4—C5—C1 | 119.28 (15) | C17—C16—C15 | 119.85 (15) |
| C4—C5—H5 | 120.4 | C17—C16—H16 | 120.1 |
| C1—C5—H5 | 120.4 | C15—C16—H16 | 120.1 |
| N2—C6—C1 | 114.78 (14) | C16—C17—C18 | 120.54 (15) |
| N2—C6—H6A | 108.6 | C16—C17—H17 | 119.7 |
| C1—C6—H6A | 108.6 | C18—C17—H17 | 119.7 |
| N2—C6—H6B | 108.6 | O4—C18—C19 | 122.69 (14) |
| C1—C6—H6B | 108.6 | O4—C18—C17 | 117.82 (14) |
| H6A—C6—H6B | 107.5 | C19—C18—C17 | 119.49 (14) |
| O1—C7—N2 | 125.14 (15) | C20—C19—C18 | 119.95 (15) |
| O1—C7—C7i | 121.86 (17) | C20—C19—H19 | 120.0 |
| N2—C7—C7i | 112.99 (16) | C18—C19—H19 | 120.0 |
| C13—C8—C9 | 119.19 (14) | C19—C20—C15 | 120.66 (15) |
| C13—C8—C14 | 116.22 (14) | C19—C20—H20 | 119.7 |
| C9—C8—C14 | 124.57 (14) | C15—C20—H20 | 119.7 |
| C10—C9—C8 | 119.98 (14) | ||
| C9—N3—N4—C15 | −179.67 (12) | C9—C10—C11—C12 | 0.5 (3) |
| C5—C1—C2—C3 | 0.9 (2) | C10—C11—C12—C13 | −0.6 (3) |
| C6—C1—C2—C3 | −178.53 (14) | C11—C12—C13—C8 | 0.2 (2) |
| C4—N1—C3—C2 | −0.5 (2) | C9—C8—C13—C12 | 0.3 (2) |
| C1—C2—C3—N1 | −0.5 (3) | C14—C8—C13—C12 | −178.21 (14) |
| C3—N1—C4—C5 | 0.9 (2) | C13—C8—C14—O2 | −1.2 (2) |
| N1—C4—C5—C1 | −0.5 (2) | C9—C8—C14—O2 | −179.56 (15) |
| C2—C1—C5—C4 | −0.5 (2) | C13—C8—C14—O3 | 178.70 (14) |
| C6—C1—C5—C4 | 178.93 (14) | C9—C8—C14—O3 | 0.3 (2) |
| C7—N2—C6—C1 | −79.82 (19) | N3—N4—C15—C20 | 171.10 (13) |
| C2—C1—C6—N2 | 172.60 (14) | N3—N4—C15—C16 | −8.5 (2) |
| C5—C1—C6—N2 | −6.8 (2) | C20—C15—C16—C17 | −0.4 (2) |
| C6—N2—C7—O1 | 3.7 (2) | N4—C15—C16—C17 | 179.19 (15) |
| C6—N2—C7—C7i | −176.57 (15) | C15—C16—C17—C18 | −0.2 (2) |
| C13—C8—C9—C10 | −0.4 (2) | C16—C17—C18—O4 | 179.60 (14) |
| C14—C8—C9—C10 | 178.01 (14) | C16—C17—C18—C19 | 0.0 (2) |
| C13—C8—C9—N3 | 180.00 (13) | O4—C18—C19—C20 | −178.74 (15) |
| C14—C8—C9—N3 | −1.6 (2) | C17—C18—C19—C20 | 0.9 (2) |
| N4—N3—C9—C10 | −5.8 (2) | C18—C19—C20—C15 | −1.5 (2) |
| N4—N3—C9—C8 | 173.84 (13) | N4—C15—C20—C19 | −178.39 (14) |
| C8—C9—C10—C11 | 0.0 (2) | C16—C15—C20—C19 | 1.2 (2) |
| N3—C9—C10—C11 | 179.58 (15) |
| H··· | ||||
| O3—H1o···N3 | 0.84 | 1.79 | 2.568 (2) | 154 |
| N2—H1n···O3ii | 0.88 | 2.11 | 2.966 (2) | 163 |
| O4—H2o···N1iii | 0.84 | 1.88 | 2.720 (2) | 173 |
| C5—H5···O2iv | 0.95 | 2.34 | 3.187 (3) | 148 |
| C6—H6a···O2ii | 0.99 | 2.54 | 3.265 (3) | 130 |
| C2—H2···Cg(3)v | 0.95 | 2.76 | 3.542 (3) | 140 |
| C4—H4···Cg(2) | 0.95 | 2.87 | 3.684 (3) | 145 |
| C11—H11···Cg(1)vi | 0.95 | 2.96 | 3.642 (3) | 130 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H1o⋯N3 | 0.84 | 1.79 | 2.568 (2) | 154 |
| N2—H1n⋯O3i | 0.88 | 2.11 | 2.966 (2) | 163 |
| O4—H2o⋯N1ii | 0.84 | 1.88 | 2.720 (2) | 173 |
| C5—H5⋯O2iii | 0.95 | 2.34 | 3.187 (3) | 148 |
| C6—H6a⋯O2i | 0.99 | 2.54 | 3.265 (3) | 130 |
| C2—H2⋯ | 0.95 | 2.76 | 3.542 (3) | 140 |
| C4—H4⋯ | 0.95 | 2.87 | 3.684 (3) | 145 |
| C11—H11⋯ | 0.95 | 2.96 | 3.642 (3) | 130 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) . Cg(1), Cg(2) and Cg(3) are the centroids of the N1,C2–C5, C8–C13 and C15–C20 rings, respectively.