| Literature DB >> 27006815 |
Sabrina Syed1, Mukesh M Jotani2, Siti Nadiah Abdul Halim1, Edward R T Tiekink3.
Abstract
The asymmetric unit of the title 2:1 co-crystal, 2C8H8O2·C14H14N4O2, comprises an acid mol-ecule in a general position and half a di-amide mol-ecule, the latter being located about a centre of inversion. In the acid, the carb-oxy-lic acid group is twisted out of the plane of the benzene ring to which it is attached [dihedral angle = 28.51 (8)°] and the carbonyl O atom and methyl group lie approximately to the same side of the mol-ecule [hy-droxy-O-C-C-C(H) torsion angle = -27.92 (17)°]. In the di-amide, the central C4N2O2 core is almost planar (r.m.s. deviation = 0.031 Å), and the pyridyl rings are perpendicular, lying to either side of the central plane [central residue/pyridyl dihedral angle = 88.60 (5)°]. In the mol-ecular packing, three-mol-ecule aggregates are formed via hy-droxy-O-H⋯N(pyrid-yl) hydrogen bonds. These are connected into a supra-molecular layer parallel to (12[Formula: see text]) via amide-N-H⋯O(carbon-yl) hydrogen bonds, as well as methyl-ene-C-H⋯O(amide) inter-actions. Significant π-π inter-actions occur between benzene/benzene, pyrid-yl/benzene and pyrid-yl/pyridyl rings within and between layers to consolidate the three-dimensional packing.Entities:
Keywords: Hirshfeld surface analysis; carboxylic acid; co-crystal; crystal structure; diamide; hydrogen bonding
Year: 2016 PMID: 27006815 PMCID: PMC4778829 DOI: 10.1107/S2056989016002735
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structures of the molecules comprising the title co-crystal showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level: (a) 2-methylbenzoic acid and (b) N,N′-bis(pyridin-4-ylmethyl)ethanediamide; unlabelled atoms in the diamide are generated by the symmetry operation (−1 − x, 2 − y, 1 − z).
Dihedral and torsion angles (°) for 2-methylbenzoic acid in the title co-crystal and in literature precedents
| Compound | CH—C—C—OH | C6/CO2 | CSD Refcode | Reference |
|---|---|---|---|---|
| Parent compound | 1.7 (2) | 1.5 (5) | OTOLIC02 | Thakur & Desiraju (2008 |
| 1:1 Co-crystal with CF_1 | 7.5 (2) | 8.04 (9) | WICZUF | Day |
| 1:1 Co-crystal with CF_2 | 4.25 (19) | 4.02 (12) | EXIBOD | Ebenezer |
| 1:1 Co-crystal with CF_3 | 27.4 (3) | 27.8 (2) | EXIZIR | Ebenezer |
| 1:1 Co-crystal with CF_4 | 23.0 (2) | 23.86 (8) | CEKLEL | Wales |
| Title co-crystal | −27.92 (18) | 28.51 (8) | – | This work |
Notes: (a) Refer to Scheme 2 for the chemical structures of coformers CF_1–CF_4. (b) Groom & Allen (2014 ▸).
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.87 (1) | 2.31 (1) | 2.7100 (16) | 108 (1) |
| O2—H2 | 0.85 (2) | 1.79 (2) | 2.6378 (16) | 178 (2) |
| N2—H2 | 0.87 (1) | 2.17 (1) | 2.8933 (15) | 140 (1) |
| C6—H3 | 0.99 | 2.48 | 3.3461 (18) | 146 |
Symmetry codes: (i) ; (ii) ; (iii) .
Selected geometric details (Å, °) for N,N′-bis(pyridin-4-ylmethyl)ethanediamide molecules and protonated forms
| Coformer | C4N2O2/N-ring | C(=O)—C(=O) | Refcode | Ref. |
|---|---|---|---|---|
| – | 74.90 (4) | 1.532 (2) | CICYOD01 | Lee (2010 |
| – | 68.83 (4); 70.89 (5) | 1.541 (3) | CICYOD | Lee & Wang (2007 |
| 80.46 (5); 83.35 (6) | 1.541 (3) | |||
| CF_5 | 87.37 (4) | 1.534 (2) | NAXMEG | Arman, Kaulgud |
| CF_6 | 79.86 (4) | 1.542 (2) | AJEZEV | Arman |
| CF_7 | 70.50 (4); 76.89 (4) | 1.52 (2) | CAJRAH | Nguyen |
| CF_8 | 73.38 (11) | 1.523 (7) | SEPSIP | Nguyen |
| CF_8 | 72.87 (9) | 1.514 (5) | SEPSIP01 | Nguyen |
| CF_9 | 75.83 (5) | 1.543 (3) | TIPGUW | Arman |
| 2-Methylbenzoic acid | 88.66 (4) | 1.5356 (19) | – | This work |
Notes: (a) Refer to Scheme 3 for the chemical structures of coformers, CF_5–CF_9; (b) Groom & Allen (2014 ▸); (c) molecule/dianion is centrosymmetric; (d) form I; (e) form II (two independent molecules); (f) 2:1 carboxylic acid/carboxylate diamide co-crystal/salt; (g) 1:1 dicarboxylic acid diamide co-crystal; (h) form I; (i) form II.
Figure 2Molecular packing in the title co-crystal: (a) three-molecule aggregate sustained by hydroxy-O—H⋯N(pyridyl) hydrogen bonds, (b) supramolecular layers whereby the aggregates in (a) are connected by amide-N—H⋯O(carbonyl) and methylene-C—H⋯O(amide) interactions, and (c) a view of the unit-cell contents shown in projection down the a axis, highlighting the intra- and inter-layer π–π interactions to consolidate a three-dimensional architecture. The O—H⋯N, N—H⋯O, C—H⋯O and π–π interactions are shown as orange, blue, green and purple dashed lines, respectively.
π–π Interactions (Å, °)
| Ring 1 | Ring 2 | Inter-centroid distance | Dihedral angle | Symmetry |
|---|---|---|---|---|
| N1,C1–C5 | N1,C1–C5 | 3.5980 (8) | 0 | − |
| N1,C1–C5 | C9–C14 | 3.7833 (9) | 4.63 (7) | 1 − |
| C9–C14 | C9–C14 | 3.8473 (8) | 0 | −1 − |
Figure 3Views of the Hirshfeld surfaces mapped over d norm: (a) acid and (b) diamide in the title 2:1 co-crystal. The contact points (red) are labelled to indicate the atoms participating in the intermolecular interactions.
Figure 4Hirshfeld surfaces mapped over d norm showing hydrogen bonds with neighbouring molecules with the reference molecule being the (a) acid and (b) diamide.
Figure 5The two-dimensional fingerprint plots for the (a) acid, (b) diamide, and (c) overall 2:1 co-crystal.
Major percentage contribution of the different intermolecular interactions to the Hirshfeld surfaces for the acid, diamide and 2:1 co-crystal
| Contact | Acid | Diamide | Co-crystal |
|---|---|---|---|
| H⋯H | 48.7 | 45.2 | 49.9 |
| O⋯H/H⋯O | 20.6 | 25.6 | 21.3 |
| C⋯H/H⋯C | 16.7 | 12.0 | 15.9 |
| N⋯H/H⋯N | 3.8 | 8.9 | 2.7 |
| C⋯C | 5.9 | 6.4 | 6.6 |
Figure 6The two-dimensional fingerprint plot for the title 2:1 co-crystal showing contributions from different contacts: (a) H⋯H, (b) O⋯H/H⋯O, (c) C⋯H/H⋯C, (d) N⋯H/H⋯N, and (e) C⋯C.
Figure 7Hirshfeld surfaces mapped over the shape index for (a) the acid and (b) the diamide, highlighting the regions involved in π–π stacking interactions.
Figure 8Hirshfeld surfaces mapped over curvedness for (a) the acid and (b) the diamide, highlighting the regions involved in π–π stacking interactions.
Enrichment ratios (ER) for the acid, diamide and co-crystal
| Interaction | Acid | Diamide | Co-crystal |
|---|---|---|---|
| H⋯H | 1.02 | 0.97 | 1.02 |
| O⋯H/H⋯O | 1.22 | 1.46 | 1.30 |
| C⋯C | 2.30 | 3.60 | 2.55 |
| C⋯H/H⋯C | 0.75 | 0.66 | 0.71 |
| N⋯H/H⋯N | 1.06 | 1.20 | 0.84 |
Experimental details
| Crystal data | |
| Chemical formula | C14H14N4O2·2C8H8O2 |
|
| 542.58 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 100 |
|
| 6.8948 (5), 9.7219 (5), 9.9621 (7) |
| α, β, γ (°) | 82.971 (5), 81.638 (6), 85.686 (5) |
|
| 654.58 (8) |
|
| 1 |
| Radiation type | Mo |
| μ (mm−1) | 0.10 |
| Crystal size (mm) | 0.21 × 0.15 × 0.10 |
| Data collection | |
| Diffractometer | Agilent Technologies SuperNova Dual diffractometer with an Atlas detector |
| Absorption correction | Multi-scan ( |
|
| 0.580, 1.000 |
| No. of measured, independent and observed [ | 15067, 2993, 2358 |
|
| 0.044 |
| (sin θ/λ)max (Å−1) | 0.650 |
| Refinement | |
|
| 0.041, 0.106, 1.06 |
| No. of reflections | 2993 |
| No. of parameters | 188 |
| No. of restraints | 2 |
| Δρmax, Δρmin (e Å−3) | 0.34, −0.23 |
Computer programs: CrysAlis PRO (Agilent, 2014 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| C14H14N4O2·2C8H8O2 | |
| Triclinic, | |
| Mo | |
| Cell parameters from 3840 reflections | |
| θ = 3.5–30.0° | |
| α = 82.971 (5)° | µ = 0.10 mm−1 |
| β = 81.638 (6)° | |
| γ = 85.686 (5)° | Prism, colourless |
| 0.21 × 0.15 × 0.10 mm |
| Agilent Technologies SuperNova Dual diffractometer with an Atlas detector | 2993 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 2358 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 27.5°, θmin = 3.0° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 15067 measured reflections |
| Refinement on | 2 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.34 e Å−3 | |
| 2993 reflections | Δρmin = −0.23 e Å−3 |
| 188 parameters |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | −0.26845 (15) | 1.04906 (10) | 0.41903 (10) | 0.0202 (2) | |
| N1 | 0.10595 (19) | 0.54943 (12) | 0.25502 (12) | 0.0194 (3) | |
| N2 | −0.34990 (18) | 0.85635 (11) | 0.56442 (12) | 0.0157 (3) | |
| H2N | −0.4483 (18) | 0.8165 (15) | 0.6161 (14) | 0.019* | |
| C1 | −0.0650 (2) | 0.71369 (13) | 0.45691 (14) | 0.0159 (3) | |
| C2 | 0.1324 (2) | 0.66915 (14) | 0.44690 (15) | 0.0183 (3) | |
| H2 | 0.2123 | 0.6945 | 0.5089 | 0.022* | |
| C3 | 0.2113 (2) | 0.58766 (14) | 0.34574 (15) | 0.0197 (3) | |
| H3 | 0.3461 | 0.5574 | 0.3403 | 0.024* | |
| C4 | −0.0837 (2) | 0.59250 (14) | 0.26467 (15) | 0.0205 (3) | |
| H4 | −0.1600 | 0.5661 | 0.2009 | 0.025* | |
| C5 | −0.1746 (2) | 0.67411 (14) | 0.36357 (15) | 0.0182 (3) | |
| H5 | −0.3100 | 0.7024 | 0.3672 | 0.022* | |
| C6 | −0.1494 (2) | 0.80107 (14) | 0.57005 (14) | 0.0165 (3) | |
| H3A | −0.1442 | 0.7438 | 0.6589 | 0.020* | |
| H3B | −0.0648 | 0.8796 | 0.5668 | 0.020* | |
| C7 | −0.3901 (2) | 0.97768 (13) | 0.49211 (14) | 0.0154 (3) | |
| O2 | 0.30435 (15) | 0.41238 (10) | 0.06130 (11) | 0.0200 (2) | |
| H2O | 0.242 (2) | 0.4581 (16) | 0.1233 (15) | 0.030* | |
| O3 | 0.50558 (15) | 0.34690 (10) | 0.21737 (10) | 0.0210 (2) | |
| C8 | 0.4571 (2) | 0.33987 (13) | 0.10547 (14) | 0.0160 (3) | |
| C9 | 0.5600 (2) | 0.24530 (13) | 0.00615 (14) | 0.0157 (3) | |
| C10 | 0.4507 (2) | 0.19550 (14) | −0.08313 (15) | 0.0183 (3) | |
| H10 | 0.3160 | 0.2250 | −0.0817 | 0.022* | |
| C11 | 0.5355 (2) | 0.10374 (14) | −0.17385 (15) | 0.0222 (3) | |
| H11 | 0.4586 | 0.0672 | −0.2314 | 0.027* | |
| C12 | 0.7337 (2) | 0.06622 (14) | −0.17932 (15) | 0.0220 (3) | |
| H12 | 0.7947 | 0.0059 | −0.2432 | 0.026* | |
| C13 | 0.8436 (2) | 0.11621 (14) | −0.09211 (15) | 0.0195 (3) | |
| H13 | 0.9800 | 0.0904 | −0.0983 | 0.023* | |
| C14 | 0.7595 (2) | 0.20349 (13) | 0.00468 (14) | 0.0166 (3) | |
| C15 | 0.8858 (2) | 0.24942 (15) | 0.09983 (16) | 0.0225 (3) | |
| H15A | 0.8762 | 0.3510 | 0.0945 | 0.034* | |
| H15B | 1.0226 | 0.2173 | 0.0735 | 0.034* | |
| H15C | 0.8409 | 0.2100 | 0.1935 | 0.034* |
| O1 | 0.0158 (5) | 0.0209 (5) | 0.0229 (6) | −0.0017 (4) | −0.0010 (4) | −0.0004 (4) |
| N1 | 0.0224 (7) | 0.0166 (6) | 0.0179 (6) | 0.0030 (5) | 0.0001 (5) | −0.0027 (5) |
| N2 | 0.0132 (6) | 0.0170 (6) | 0.0166 (6) | 0.0005 (4) | −0.0005 (5) | −0.0031 (4) |
| C1 | 0.0179 (7) | 0.0129 (6) | 0.0155 (7) | −0.0004 (5) | 0.0001 (6) | 0.0004 (5) |
| C2 | 0.0170 (7) | 0.0173 (6) | 0.0208 (7) | −0.0004 (5) | −0.0025 (6) | −0.0029 (5) |
| C3 | 0.0170 (7) | 0.0164 (6) | 0.0243 (8) | 0.0011 (5) | 0.0006 (6) | −0.0018 (6) |
| C4 | 0.0238 (8) | 0.0190 (7) | 0.0190 (7) | 0.0025 (6) | −0.0048 (6) | −0.0037 (6) |
| C5 | 0.0160 (7) | 0.0185 (7) | 0.0199 (7) | 0.0031 (5) | −0.0028 (6) | −0.0039 (5) |
| C6 | 0.0150 (7) | 0.0176 (6) | 0.0170 (7) | 0.0011 (5) | −0.0021 (6) | −0.0035 (5) |
| C7 | 0.0176 (8) | 0.0158 (6) | 0.0137 (7) | −0.0006 (5) | −0.0019 (6) | −0.0058 (5) |
| O2 | 0.0177 (6) | 0.0225 (5) | 0.0196 (5) | 0.0044 (4) | −0.0008 (4) | −0.0067 (4) |
| O3 | 0.0239 (6) | 0.0232 (5) | 0.0156 (5) | 0.0019 (4) | −0.0012 (4) | −0.0042 (4) |
| C8 | 0.0154 (7) | 0.0151 (6) | 0.0163 (7) | −0.0020 (5) | 0.0015 (6) | −0.0005 (5) |
| C9 | 0.0174 (7) | 0.0144 (6) | 0.0140 (7) | −0.0017 (5) | 0.0009 (6) | 0.0001 (5) |
| C10 | 0.0166 (7) | 0.0197 (7) | 0.0180 (7) | 0.0005 (5) | −0.0023 (6) | −0.0008 (5) |
| C11 | 0.0283 (9) | 0.0211 (7) | 0.0185 (8) | −0.0015 (6) | −0.0062 (6) | −0.0039 (6) |
| C12 | 0.0296 (9) | 0.0182 (7) | 0.0172 (7) | 0.0046 (6) | −0.0005 (6) | −0.0045 (6) |
| C13 | 0.0198 (8) | 0.0186 (7) | 0.0183 (7) | 0.0028 (6) | 0.0004 (6) | −0.0008 (5) |
| C14 | 0.0185 (7) | 0.0140 (6) | 0.0163 (7) | −0.0021 (5) | 0.0000 (6) | 0.0001 (5) |
| C15 | 0.0173 (8) | 0.0259 (7) | 0.0251 (8) | −0.0003 (6) | −0.0024 (6) | −0.0075 (6) |
| O1—C7 | 1.2252 (17) | O2—C8 | 1.3217 (17) |
| N1—C4 | 1.3364 (19) | O2—H2O | 0.853 (9) |
| N1—C3 | 1.3401 (19) | O3—C8 | 1.2205 (17) |
| N2—C7 | 1.3371 (17) | C8—C9 | 1.4994 (18) |
| N2—C6 | 1.4510 (18) | C9—C10 | 1.396 (2) |
| N2—H2N | 0.874 (9) | C9—C14 | 1.403 (2) |
| C1—C5 | 1.385 (2) | C10—C11 | 1.385 (2) |
| C1—C2 | 1.390 (2) | C10—H10 | 0.9500 |
| C1—C6 | 1.5166 (18) | C11—C12 | 1.383 (2) |
| C2—C3 | 1.3820 (19) | C11—H11 | 0.9500 |
| C2—H2 | 0.9500 | C12—C13 | 1.384 (2) |
| C3—H3 | 0.9500 | C12—H12 | 0.9500 |
| C4—C5 | 1.3892 (19) | C13—C14 | 1.3964 (19) |
| C4—H4 | 0.9500 | C13—H13 | 0.9500 |
| C5—H5 | 0.9500 | C14—C15 | 1.503 (2) |
| C6—H3A | 0.9900 | C15—H15A | 0.9800 |
| C6—H3B | 0.9900 | C15—H15B | 0.9800 |
| C7—C7i | 1.536 (3) | C15—H15C | 0.9800 |
| C4—N1—C3 | 117.67 (12) | C8—O2—H2O | 110.8 (13) |
| C7—N2—C6 | 121.54 (12) | O3—C8—O2 | 123.13 (12) |
| C7—N2—H2N | 117.2 (11) | O3—C8—C9 | 123.68 (13) |
| C6—N2—H2N | 120.9 (11) | O2—C8—C9 | 113.16 (12) |
| C5—C1—C2 | 117.97 (13) | C10—C9—C14 | 120.20 (12) |
| C5—C1—C6 | 123.56 (13) | C10—C9—C8 | 118.28 (13) |
| C2—C1—C6 | 118.47 (13) | C14—C9—C8 | 121.48 (12) |
| C3—C2—C1 | 119.31 (14) | C11—C10—C9 | 121.07 (14) |
| C3—C2—H2 | 120.3 | C11—C10—H10 | 119.5 |
| C1—C2—H2 | 120.3 | C9—C10—H10 | 119.5 |
| N1—C3—C2 | 122.93 (14) | C12—C11—C10 | 118.97 (14) |
| N1—C3—H3 | 118.5 | C12—C11—H11 | 120.5 |
| C2—C3—H3 | 118.5 | C10—C11—H11 | 120.5 |
| N1—C4—C5 | 123.05 (14) | C11—C12—C13 | 120.28 (13) |
| N1—C4—H4 | 118.5 | C11—C12—H12 | 119.9 |
| C5—C4—H4 | 118.5 | C13—C12—H12 | 119.9 |
| C1—C5—C4 | 119.07 (13) | C12—C13—C14 | 121.79 (14) |
| C1—C5—H5 | 120.5 | C12—C13—H13 | 119.1 |
| C4—C5—H5 | 120.5 | C14—C13—H13 | 119.1 |
| N2—C6—C1 | 115.06 (12) | C13—C14—C9 | 117.56 (13) |
| N2—C6—H3A | 108.5 | C13—C14—C15 | 119.00 (13) |
| C1—C6—H3A | 108.5 | C9—C14—C15 | 123.43 (12) |
| N2—C6—H3B | 108.5 | C14—C15—H15A | 109.5 |
| C1—C6—H3B | 108.5 | C14—C15—H15B | 109.5 |
| H3A—C6—H3B | 107.5 | H15A—C15—H15B | 109.5 |
| O1—C7—N2 | 125.26 (13) | C14—C15—H15C | 109.5 |
| O1—C7—C7i | 121.45 (15) | H15A—C15—H15C | 109.5 |
| N2—C7—C7i | 113.29 (15) | H15B—C15—H15C | 109.5 |
| C5—C1—C2—C3 | −0.2 (2) | O2—C8—C9—C10 | −27.92 (17) |
| C6—C1—C2—C3 | 179.02 (12) | O3—C8—C9—C14 | −27.8 (2) |
| C4—N1—C3—C2 | −0.3 (2) | O2—C8—C9—C14 | 154.08 (12) |
| C1—C2—C3—N1 | 0.4 (2) | C14—C9—C10—C11 | 0.4 (2) |
| C3—N1—C4—C5 | 0.0 (2) | C8—C9—C10—C11 | −177.60 (12) |
| C2—C1—C5—C4 | −0.1 (2) | C9—C10—C11—C12 | −2.8 (2) |
| C6—C1—C5—C4 | −179.24 (12) | C10—C11—C12—C13 | 2.1 (2) |
| N1—C4—C5—C1 | 0.2 (2) | C11—C12—C13—C14 | 0.9 (2) |
| C7—N2—C6—C1 | −87.65 (15) | C12—C13—C14—C9 | −3.3 (2) |
| C5—C1—C6—N2 | −7.47 (19) | C12—C13—C14—C15 | 177.62 (13) |
| C2—C1—C6—N2 | 173.38 (12) | C10—C9—C14—C13 | 2.56 (19) |
| C6—N2—C7—O1 | 4.4 (2) | C8—C9—C14—C13 | −179.48 (12) |
| C6—N2—C7—C7i | −175.86 (13) | C10—C9—C14—C15 | −178.36 (13) |
| O3—C8—C9—C10 | 150.23 (14) | C8—C9—C14—C15 | −0.4 (2) |
| H··· | ||||
| N2—H2 | 0.87 (1) | 2.31 (1) | 2.7100 (16) | 108 (1) |
| O2—H2 | 0.85 (2) | 1.79 (2) | 2.6378 (16) | 178 (2) |
| N2—H2 | 0.87 (1) | 2.17 (1) | 2.8933 (15) | 140 (1) |
| C6—H3 | 0.99 | 2.48 | 3.3461 (18) | 146 |