| Literature DB >> 21578807 |
Muhammad Nadeem Arshad, Muhammad Zia-Ur-Rehman, Islam Ullah Khan.
Abstract
In the title compound, C(13)H(13)NO(5)S, the thia-zine ring adopts a distorted half-chair conformation. Intra-molecular O-H⋯O and C-H⋯O hydrogen bonds give rise to two six-membered hydrogen bonded rings. In the crystal, mol-ecules are linked through weak inter-molecular C-H⋯O hydrogen bonds, resulting in a zigzag chain lying along the c axis.Entities:
Year: 2009 PMID: 21578807 PMCID: PMC2971956 DOI: 10.1107/S160053680904673X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H13NO5S | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2ac | Cell parameters from 1619 reflections |
| θ = 3.1–21.7° | |
| µ = 0.26 mm−1 | |
| Needle, colourless | |
| 0.45 × 0.11 × 0.07 mm |
| Bruker APEXII CCD area-detector diffractometer | 2808 independent reflections |
| Radiation source: fine-focus sealed tube | 1763 reflections with |
| graphite | |
| φ and ω scans | θmax = 28.3°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 8404 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2808 reflections | Δρmax = 0.18 e Å−3 |
| 183 parameters | Δρmin = −0.23 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 1046 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.07 (11) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | −0.11229 (6) | 0.28643 (12) | 0.49624 (9) | 0.0550 (3) | |
| O1 | −0.12270 (18) | 0.1530 (4) | 0.5634 (3) | 0.0733 (9) | |
| O2 | −0.19486 (15) | 0.4041 (3) | 0.4937 (3) | 0.0714 (8) | |
| O3 | 0.18469 (19) | 0.0795 (3) | 0.4129 (2) | 0.0669 (9) | |
| H3O | 0.2303 | 0.0963 | 0.4571 | 0.100* | |
| O4 | 0.26461 (18) | 0.2122 (3) | 0.5724 (2) | 0.0658 (8) | |
| O5 | 0.16238 (19) | 0.3843 (3) | 0.6600 (2) | 0.0612 (7) | |
| N1 | 0.0004 (2) | 0.3754 (3) | 0.5229 (2) | 0.0490 (9) | |
| C1 | −0.0885 (3) | 0.2109 (4) | 0.3733 (3) | 0.0487 (10) | |
| C2 | −0.1708 (3) | 0.1997 (5) | 0.3013 (4) | 0.0647 (12) | |
| H2 | −0.2396 | 0.2360 | 0.3168 | 0.078* | |
| C3 | −0.1488 (4) | 0.1344 (5) | 0.2074 (4) | 0.0737 (13) | |
| H3A | −0.2034 | 0.1247 | 0.1590 | 0.088* | |
| C4 | −0.0462 (4) | 0.0828 (5) | 0.1837 (4) | 0.0721 (12) | |
| H4 | −0.0319 | 0.0406 | 0.1191 | 0.087* | |
| C5 | 0.0348 (3) | 0.0935 (5) | 0.2553 (3) | 0.0602 (12) | |
| H5 | 0.1032 | 0.0564 | 0.2391 | 0.072* | |
| C6 | 0.0156 (3) | 0.1588 (4) | 0.3509 (3) | 0.0468 (9) | |
| C7 | 0.1002 (3) | 0.1766 (4) | 0.4281 (3) | 0.0467 (9) | |
| C8 | 0.0945 (2) | 0.2785 (4) | 0.5071 (4) | 0.0450 (9) | |
| C9 | 0.1819 (3) | 0.2889 (4) | 0.5819 (3) | 0.0502 (9) | |
| C10 | 0.2475 (4) | 0.3995 (6) | 0.7344 (4) | 0.0867 (14) | |
| H10A | 0.3070 | 0.4555 | 0.7042 | 0.130* | |
| H10B | 0.2706 | 0.2951 | 0.7557 | 0.130* | |
| H10C | 0.2218 | 0.4579 | 0.7930 | 0.130* | |
| C11 | 0.0106 (3) | 0.5495 (4) | 0.5090 (3) | 0.0595 (10) | |
| H11A | 0.0695 | 0.5878 | 0.5513 | 0.071* | |
| H11B | −0.0548 | 0.6004 | 0.5331 | 0.071* | |
| C12 | 0.0304 (4) | 0.5986 (7) | 0.4006 (5) | 0.1008 (19) | |
| H12 | 0.0732 | 0.5271 | 0.3642 | 0.121* | |
| C13 | 0.0036 (6) | 0.7061 (11) | 0.3530 (7) | 0.161 (3) | |
| H13A | −0.0395 | 0.7845 | 0.3826 | 0.194* | |
| H13B | 0.0249 | 0.7154 | 0.2848 | 0.194* |
| S1 | 0.0376 (4) | 0.0683 (6) | 0.0593 (6) | 0.0050 (4) | 0.0069 (5) | 0.0078 (7) |
| O1 | 0.0553 (15) | 0.088 (2) | 0.076 (2) | −0.0060 (14) | 0.0169 (15) | 0.0296 (19) |
| O2 | 0.0418 (12) | 0.0919 (19) | 0.080 (2) | 0.0220 (12) | 0.0017 (16) | −0.0075 (19) |
| O3 | 0.0477 (15) | 0.0674 (19) | 0.086 (3) | 0.0147 (14) | −0.0021 (13) | −0.0186 (15) |
| O4 | 0.0474 (14) | 0.0682 (17) | 0.082 (2) | 0.0146 (13) | −0.0103 (13) | −0.0130 (18) |
| O5 | 0.0537 (14) | 0.0741 (19) | 0.0557 (19) | 0.0121 (13) | −0.0078 (13) | −0.0097 (16) |
| N1 | 0.0439 (14) | 0.0501 (18) | 0.053 (3) | 0.0077 (13) | 0.0021 (12) | 0.0005 (16) |
| C1 | 0.046 (2) | 0.037 (2) | 0.064 (3) | −0.0039 (16) | −0.0024 (18) | 0.006 (2) |
| C2 | 0.055 (2) | 0.055 (3) | 0.084 (4) | 0.005 (2) | −0.012 (2) | −0.001 (3) |
| C3 | 0.074 (3) | 0.072 (3) | 0.075 (4) | 0.001 (2) | −0.025 (2) | −0.010 (3) |
| C4 | 0.092 (3) | 0.064 (3) | 0.060 (3) | −0.005 (2) | −0.011 (3) | −0.016 (2) |
| C5 | 0.057 (2) | 0.052 (3) | 0.072 (4) | −0.0030 (18) | 0.001 (2) | −0.013 (2) |
| C6 | 0.0473 (19) | 0.039 (2) | 0.054 (3) | −0.0024 (15) | −0.0026 (18) | −0.0014 (19) |
| C7 | 0.0384 (18) | 0.043 (2) | 0.059 (3) | 0.0018 (15) | 0.0066 (18) | 0.0058 (19) |
| C8 | 0.0376 (15) | 0.0445 (19) | 0.053 (3) | 0.0037 (15) | 0.005 (2) | 0.001 (2) |
| C9 | 0.048 (2) | 0.046 (2) | 0.057 (3) | 0.0034 (18) | 0.0015 (19) | 0.005 (2) |
| C10 | 0.077 (2) | 0.113 (4) | 0.070 (3) | 0.024 (3) | −0.031 (2) | −0.027 (3) |
| C11 | 0.061 (2) | 0.050 (2) | 0.068 (3) | 0.0065 (17) | −0.002 (2) | 0.001 (2) |
| C12 | 0.093 (4) | 0.070 (4) | 0.139 (6) | 0.008 (3) | 0.010 (3) | 0.036 (4) |
| C13 | 0.211 (9) | 0.131 (7) | 0.142 (7) | −0.031 (6) | −0.035 (6) | 0.050 (5) |
| S1—O2 | 1.423 (2) | C4—C5 | 1.375 (5) |
| S1—O1 | 1.424 (3) | C4—H4 | 0.9300 |
| S1—N1 | 1.625 (3) | C5—C6 | 1.380 (5) |
| S1—C1 | 1.746 (4) | C5—H5 | 0.9300 |
| O3—C7 | 1.343 (4) | C6—C7 | 1.462 (5) |
| O3—H3O | 0.8200 | C7—C8 | 1.338 (5) |
| O4—C9 | 1.218 (4) | C8—C9 | 1.461 (5) |
| O5—C9 | 1.315 (4) | C10—H10A | 0.9600 |
| O5—C10 | 1.440 (5) | C10—H10B | 0.9600 |
| N1—C8 | 1.438 (4) | C10—H10C | 0.9600 |
| N1—C11 | 1.473 (4) | C11—C12 | 1.490 (7) |
| C1—C2 | 1.390 (5) | C11—H11A | 0.9700 |
| C1—C6 | 1.396 (5) | C11—H11B | 0.9700 |
| C2—C3 | 1.366 (6) | C12—C13 | 1.142 (8) |
| C2—H2 | 0.9300 | C12—H12 | 0.9300 |
| C3—C4 | 1.380 (6) | C13—H13A | 0.9300 |
| C3—H3A | 0.9300 | C13—H13B | 0.9300 |
| O2—S1—O1 | 119.46 (17) | C1—C6—C7 | 119.4 (3) |
| O2—S1—N1 | 108.03 (15) | C8—C7—O3 | 122.7 (3) |
| O1—S1—N1 | 107.87 (16) | C8—C7—C6 | 123.7 (3) |
| O2—S1—C1 | 110.57 (18) | O3—C7—C6 | 113.5 (3) |
| O1—S1—C1 | 107.1 (2) | C7—C8—N1 | 120.8 (3) |
| N1—S1—C1 | 102.48 (15) | C7—C8—C9 | 120.7 (3) |
| C7—O3—H3O | 109.5 | N1—C8—C9 | 118.4 (3) |
| C9—O5—C10 | 116.0 (3) | O4—C9—O5 | 123.6 (3) |
| C8—N1—C11 | 118.1 (3) | O4—C9—C8 | 121.9 (4) |
| C8—N1—S1 | 114.3 (2) | O5—C9—C8 | 114.4 (3) |
| C11—N1—S1 | 120.1 (2) | O5—C10—H10A | 109.5 |
| C2—C1—C6 | 121.4 (4) | O5—C10—H10B | 109.5 |
| C2—C1—S1 | 121.2 (3) | H10A—C10—H10B | 109.5 |
| C6—C1—S1 | 117.5 (3) | O5—C10—H10C | 109.5 |
| C3—C2—C1 | 118.8 (4) | H10A—C10—H10C | 109.5 |
| C3—C2—H2 | 120.6 | H10B—C10—H10C | 109.5 |
| C1—C2—H2 | 120.6 | N1—C11—C12 | 113.8 (4) |
| C2—C3—C4 | 120.7 (4) | N1—C11—H11A | 108.8 |
| C2—C3—H3A | 119.7 | C12—C11—H11A | 108.8 |
| C4—C3—H3A | 119.7 | N1—C11—H11B | 108.8 |
| C5—C4—C3 | 120.3 (4) | C12—C11—H11B | 108.8 |
| C5—C4—H4 | 119.9 | H11A—C11—H11B | 107.7 |
| C3—C4—H4 | 119.9 | C13—C12—C11 | 133.1 (7) |
| C4—C5—C6 | 120.7 (4) | C13—C12—H12 | 113.5 |
| C4—C5—H5 | 119.7 | C11—C12—H12 | 113.5 |
| C6—C5—H5 | 119.7 | C12—C13—H13A | 120.0 |
| C5—C6—C1 | 118.1 (3) | C12—C13—H13B | 120.0 |
| C5—C6—C7 | 122.4 (3) | H13A—C13—H13B | 120.0 |
| O2—S1—N1—C8 | −167.6 (2) | S1—C1—C6—C7 | −2.9 (5) |
| O1—S1—N1—C8 | 62.0 (3) | C5—C6—C7—C8 | 159.4 (4) |
| C1—S1—N1—C8 | −50.8 (3) | C1—C6—C7—C8 | −19.9 (6) |
| O2—S1—N1—C11 | −18.4 (4) | C5—C6—C7—O3 | −21.1 (5) |
| O1—S1—N1—C11 | −148.8 (3) | C1—C6—C7—O3 | 159.6 (3) |
| C1—S1—N1—C11 | 98.4 (3) | O3—C7—C8—N1 | −177.3 (3) |
| O2—S1—C1—C2 | −31.7 (4) | C6—C7—C8—N1 | 2.2 (6) |
| O1—S1—C1—C2 | 100.0 (3) | O3—C7—C8—C9 | 0.0 (6) |
| N1—S1—C1—C2 | −146.6 (3) | C6—C7—C8—C9 | 179.5 (3) |
| O2—S1—C1—C6 | 149.8 (3) | C11—N1—C8—C7 | −112.6 (4) |
| O1—S1—C1—C6 | −78.6 (3) | S1—N1—C8—C7 | 37.3 (4) |
| N1—S1—C1—C6 | 34.8 (3) | C11—N1—C8—C9 | 70.1 (4) |
| C6—C1—C2—C3 | 0.8 (6) | S1—N1—C8—C9 | −140.1 (3) |
| S1—C1—C2—C3 | −177.7 (3) | C10—O5—C9—O4 | 2.4 (5) |
| C1—C2—C3—C4 | −1.0 (6) | C10—O5—C9—C8 | −179.0 (3) |
| C2—C3—C4—C5 | 1.3 (7) | C7—C8—C9—O4 | 3.8 (6) |
| C3—C4—C5—C6 | −1.3 (6) | N1—C8—C9—O4 | −178.8 (3) |
| C4—C5—C6—C1 | 1.1 (6) | C7—C8—C9—O5 | −174.8 (3) |
| C4—C5—C6—C7 | −178.2 (4) | N1—C8—C9—O5 | 2.6 (5) |
| C2—C1—C6—C5 | −0.8 (6) | C8—N1—C11—C12 | 68.0 (4) |
| S1—C1—C6—C5 | 177.7 (3) | S1—N1—C11—C12 | −80.1 (4) |
| C2—C1—C6—C7 | 178.5 (3) | N1—C11—C12—C13 | 144.7 (8) |
| H··· | ||||
| O3—H3O···O4 | 0.82 | 1.84 | 2.555 (4) | 146 |
| C11—H11A···O5 | 0.97 | 2.50 | 3.055 (4) | 116 |
| C3—H3A···O1i | 0.93 | 2.51 | 3.406 (6) | 163 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3 | 0.82 | 1.84 | 2.555 (4) | 146 |
| C11—H11 | 0.97 | 2.50 | 3.055 (4) | 116 |
| C3—H3 | 0.93 | 2.51 | 3.406 (6) | 163 |
Symmetry code: (i) .