Literature DB >> 21578807

Methyl 2-allyl-4-hydr-oxy-2H-1,2-benzothia-zine-3-carboxyl-ate 1,1-dioxide.

Muhammad Nadeem Arshad, Muhammad Zia-Ur-Rehman, Islam Ullah Khan.   

Abstract

In the title compound, C(13)H(13)NO(5)S, the thia-zine ring adopts a distorted half-chair conformation. Intra-molecular O-H⋯O and C-H⋯O hydrogen bonds give rise to two six-membered hydrogen bonded rings. In the crystal, mol-ecules are linked through weak inter-molecular C-H⋯O hydrogen bonds, resulting in a zigzag chain lying along the c axis.

Entities:  

Year:  2009        PMID: 21578807      PMCID: PMC2971956          DOI: 10.1107/S160053680904673X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the syntheses of related compounds, see: Braun (1923 ▶); Zia-ur-Rehman et al. (2005 ▶). For the biological activity of benzothia­zines, see: Zia-ur-Rehman et al. (2006 ▶, 2009 ▶). For related structures, see: Arshad et al. (2009 ▶); Fabiola et al. (1998 ▶); Zia-ur-Rehman et al. (2007 ▶).

Experimental

Crystal data

C13H13NO5S M = 295.30 Orthorhombic, a = 12.4289 (10) Å b = 8.3706 (8) Å c = 13.0132 (11) Å V = 1353.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 296 K 0.45 × 0.11 × 0.07 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Sheldrick, 1996 ▶) T min = 0.893, T max = 0.982 8404 measured reflections 2808 independent reflections 1763 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.103 S = 1.06 2808 reflections 183 parameters 1 restraint H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.23 e Å−3 Absolute structure: Flack (1983 ▶), 1046 Friedel pairs Flack parameter: 0.07 (11) Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680904673X/is2483sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680904673X/is2483Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13NO5SF(000) = 616
Mr = 295.30Dx = 1.449 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 1619 reflections
a = 12.4289 (10) Åθ = 3.1–21.7°
b = 8.3706 (8) ŵ = 0.26 mm1
c = 13.0132 (11) ÅT = 296 K
V = 1353.9 (2) Å3Needle, colourless
Z = 40.45 × 0.11 × 0.07 mm
Bruker APEXII CCD area-detector diffractometer2808 independent reflections
Radiation source: fine-focus sealed tube1763 reflections with I > 2σ(I)
graphiteRint = 0.044
φ and ω scansθmax = 28.3°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −16→16
Tmin = 0.893, Tmax = 0.982k = −11→10
8404 measured reflectionsl = −17→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.103w = 1/[σ2(Fo2) + (0.0381P)2 + 0.1044P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2808 reflectionsΔρmax = 0.18 e Å3
183 parametersΔρmin = −0.23 e Å3
1 restraintAbsolute structure: Flack (1983), 1046 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.07 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.11229 (6)0.28643 (12)0.49624 (9)0.0550 (3)
O1−0.12270 (18)0.1530 (4)0.5634 (3)0.0733 (9)
O2−0.19486 (15)0.4041 (3)0.4937 (3)0.0714 (8)
O30.18469 (19)0.0795 (3)0.4129 (2)0.0669 (9)
H3O0.23030.09630.45710.100*
O40.26461 (18)0.2122 (3)0.5724 (2)0.0658 (8)
O50.16238 (19)0.3843 (3)0.6600 (2)0.0612 (7)
N10.0004 (2)0.3754 (3)0.5229 (2)0.0490 (9)
C1−0.0885 (3)0.2109 (4)0.3733 (3)0.0487 (10)
C2−0.1708 (3)0.1997 (5)0.3013 (4)0.0647 (12)
H2−0.23960.23600.31680.078*
C3−0.1488 (4)0.1344 (5)0.2074 (4)0.0737 (13)
H3A−0.20340.12470.15900.088*
C4−0.0462 (4)0.0828 (5)0.1837 (4)0.0721 (12)
H4−0.03190.04060.11910.087*
C50.0348 (3)0.0935 (5)0.2553 (3)0.0602 (12)
H50.10320.05640.23910.072*
C60.0156 (3)0.1588 (4)0.3509 (3)0.0468 (9)
C70.1002 (3)0.1766 (4)0.4281 (3)0.0467 (9)
C80.0945 (2)0.2785 (4)0.5071 (4)0.0450 (9)
C90.1819 (3)0.2889 (4)0.5819 (3)0.0502 (9)
C100.2475 (4)0.3995 (6)0.7344 (4)0.0867 (14)
H10A0.30700.45550.70420.130*
H10B0.27060.29510.75570.130*
H10C0.22180.45790.79300.130*
C110.0106 (3)0.5495 (4)0.5090 (3)0.0595 (10)
H11A0.06950.58780.55130.071*
H11B−0.05480.60040.53310.071*
C120.0304 (4)0.5986 (7)0.4006 (5)0.1008 (19)
H120.07320.52710.36420.121*
C130.0036 (6)0.7061 (11)0.3530 (7)0.161 (3)
H13A−0.03950.78450.38260.194*
H13B0.02490.71540.28480.194*
U11U22U33U12U13U23
S10.0376 (4)0.0683 (6)0.0593 (6)0.0050 (4)0.0069 (5)0.0078 (7)
O10.0553 (15)0.088 (2)0.076 (2)−0.0060 (14)0.0169 (15)0.0296 (19)
O20.0418 (12)0.0919 (19)0.080 (2)0.0220 (12)0.0017 (16)−0.0075 (19)
O30.0477 (15)0.0674 (19)0.086 (3)0.0147 (14)−0.0021 (13)−0.0186 (15)
O40.0474 (14)0.0682 (17)0.082 (2)0.0146 (13)−0.0103 (13)−0.0130 (18)
O50.0537 (14)0.0741 (19)0.0557 (19)0.0121 (13)−0.0078 (13)−0.0097 (16)
N10.0439 (14)0.0501 (18)0.053 (3)0.0077 (13)0.0021 (12)0.0005 (16)
C10.046 (2)0.037 (2)0.064 (3)−0.0039 (16)−0.0024 (18)0.006 (2)
C20.055 (2)0.055 (3)0.084 (4)0.005 (2)−0.012 (2)−0.001 (3)
C30.074 (3)0.072 (3)0.075 (4)0.001 (2)−0.025 (2)−0.010 (3)
C40.092 (3)0.064 (3)0.060 (3)−0.005 (2)−0.011 (3)−0.016 (2)
C50.057 (2)0.052 (3)0.072 (4)−0.0030 (18)0.001 (2)−0.013 (2)
C60.0473 (19)0.039 (2)0.054 (3)−0.0024 (15)−0.0026 (18)−0.0014 (19)
C70.0384 (18)0.043 (2)0.059 (3)0.0018 (15)0.0066 (18)0.0058 (19)
C80.0376 (15)0.0445 (19)0.053 (3)0.0037 (15)0.005 (2)0.001 (2)
C90.048 (2)0.046 (2)0.057 (3)0.0034 (18)0.0015 (19)0.005 (2)
C100.077 (2)0.113 (4)0.070 (3)0.024 (3)−0.031 (2)−0.027 (3)
C110.061 (2)0.050 (2)0.068 (3)0.0065 (17)−0.002 (2)0.001 (2)
C120.093 (4)0.070 (4)0.139 (6)0.008 (3)0.010 (3)0.036 (4)
C130.211 (9)0.131 (7)0.142 (7)−0.031 (6)−0.035 (6)0.050 (5)
S1—O21.423 (2)C4—C51.375 (5)
S1—O11.424 (3)C4—H40.9300
S1—N11.625 (3)C5—C61.380 (5)
S1—C11.746 (4)C5—H50.9300
O3—C71.343 (4)C6—C71.462 (5)
O3—H3O0.8200C7—C81.338 (5)
O4—C91.218 (4)C8—C91.461 (5)
O5—C91.315 (4)C10—H10A0.9600
O5—C101.440 (5)C10—H10B0.9600
N1—C81.438 (4)C10—H10C0.9600
N1—C111.473 (4)C11—C121.490 (7)
C1—C21.390 (5)C11—H11A0.9700
C1—C61.396 (5)C11—H11B0.9700
C2—C31.366 (6)C12—C131.142 (8)
C2—H20.9300C12—H120.9300
C3—C41.380 (6)C13—H13A0.9300
C3—H3A0.9300C13—H13B0.9300
O2—S1—O1119.46 (17)C1—C6—C7119.4 (3)
O2—S1—N1108.03 (15)C8—C7—O3122.7 (3)
O1—S1—N1107.87 (16)C8—C7—C6123.7 (3)
O2—S1—C1110.57 (18)O3—C7—C6113.5 (3)
O1—S1—C1107.1 (2)C7—C8—N1120.8 (3)
N1—S1—C1102.48 (15)C7—C8—C9120.7 (3)
C7—O3—H3O109.5N1—C8—C9118.4 (3)
C9—O5—C10116.0 (3)O4—C9—O5123.6 (3)
C8—N1—C11118.1 (3)O4—C9—C8121.9 (4)
C8—N1—S1114.3 (2)O5—C9—C8114.4 (3)
C11—N1—S1120.1 (2)O5—C10—H10A109.5
C2—C1—C6121.4 (4)O5—C10—H10B109.5
C2—C1—S1121.2 (3)H10A—C10—H10B109.5
C6—C1—S1117.5 (3)O5—C10—H10C109.5
C3—C2—C1118.8 (4)H10A—C10—H10C109.5
C3—C2—H2120.6H10B—C10—H10C109.5
C1—C2—H2120.6N1—C11—C12113.8 (4)
C2—C3—C4120.7 (4)N1—C11—H11A108.8
C2—C3—H3A119.7C12—C11—H11A108.8
C4—C3—H3A119.7N1—C11—H11B108.8
C5—C4—C3120.3 (4)C12—C11—H11B108.8
C5—C4—H4119.9H11A—C11—H11B107.7
C3—C4—H4119.9C13—C12—C11133.1 (7)
C4—C5—C6120.7 (4)C13—C12—H12113.5
C4—C5—H5119.7C11—C12—H12113.5
C6—C5—H5119.7C12—C13—H13A120.0
C5—C6—C1118.1 (3)C12—C13—H13B120.0
C5—C6—C7122.4 (3)H13A—C13—H13B120.0
O2—S1—N1—C8−167.6 (2)S1—C1—C6—C7−2.9 (5)
O1—S1—N1—C862.0 (3)C5—C6—C7—C8159.4 (4)
C1—S1—N1—C8−50.8 (3)C1—C6—C7—C8−19.9 (6)
O2—S1—N1—C11−18.4 (4)C5—C6—C7—O3−21.1 (5)
O1—S1—N1—C11−148.8 (3)C1—C6—C7—O3159.6 (3)
C1—S1—N1—C1198.4 (3)O3—C7—C8—N1−177.3 (3)
O2—S1—C1—C2−31.7 (4)C6—C7—C8—N12.2 (6)
O1—S1—C1—C2100.0 (3)O3—C7—C8—C90.0 (6)
N1—S1—C1—C2−146.6 (3)C6—C7—C8—C9179.5 (3)
O2—S1—C1—C6149.8 (3)C11—N1—C8—C7−112.6 (4)
O1—S1—C1—C6−78.6 (3)S1—N1—C8—C737.3 (4)
N1—S1—C1—C634.8 (3)C11—N1—C8—C970.1 (4)
C6—C1—C2—C30.8 (6)S1—N1—C8—C9−140.1 (3)
S1—C1—C2—C3−177.7 (3)C10—O5—C9—O42.4 (5)
C1—C2—C3—C4−1.0 (6)C10—O5—C9—C8−179.0 (3)
C2—C3—C4—C51.3 (7)C7—C8—C9—O43.8 (6)
C3—C4—C5—C6−1.3 (6)N1—C8—C9—O4−178.8 (3)
C4—C5—C6—C11.1 (6)C7—C8—C9—O5−174.8 (3)
C4—C5—C6—C7−178.2 (4)N1—C8—C9—O52.6 (5)
C2—C1—C6—C5−0.8 (6)C8—N1—C11—C1268.0 (4)
S1—C1—C6—C5177.7 (3)S1—N1—C11—C12−80.1 (4)
C2—C1—C6—C7178.5 (3)N1—C11—C12—C13144.7 (8)
D—H···AD—HH···AD···AD—H···A
O3—H3O···O40.821.842.555 (4)146
C11—H11A···O50.972.503.055 (4)116
C3—H3A···O1i0.932.513.406 (6)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3O⋯O40.821.842.555 (4)146
C11—H11A⋯O50.972.503.055 (4)116
C3—H3A⋯O1i 0.932.513.406 (6)163

Symmetry code: (i) .

  5 in total

1.  Synthesis of potential biologically active 1,2-benzothiazin-3-yl-quinazolin-4(3H)-ones.

Authors:  Muhammad Zia-ur-Rehman; Jamil Anwar Choudary; Saeed Ahmad; Hamid Latif Siddiqui
Journal:  Chem Pharm Bull (Tokyo)       Date:  2006-08       Impact factor: 1.645

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  A facile synthesis of novel biologically active 4-hydroxy-N'-(benzylidene)-2H-benzo[e][1,2]thiazine-3-carbohydrazide 1,1-dioxides.

Authors:  Muhammad Zia-ur-Rehman; Jamil Anwar Choudary; Mark Robert James Elsegood; Hamid Latif Siddiqui; Khalid Mohammad Khan
Journal:  Eur J Med Chem       Date:  2008-08-13       Impact factor: 6.514

4.  N-[2-(Amino-carbon-yl)phen-yl]-4-hydr-oxy-2-methyl-2H-1,2-benzothia-zine-3-carboxamide 1,1-dioxide.

Authors:  Muhammad Nadeem Arshad; Muhammad Zia-Ur-Rehman; Islam Ullah Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-30

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  6 in total

1.  Methyl 2-ethyl-4-hydr-oxy-2H-1,2-benzo-thia-zine-3-carboxyl-ate 1,1-dioxide.

Authors:  Muhammad Nadeem Arshad; Muhammad Zia-Ur-Rehman; Islam Ullah Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-14

2.  Methyl 4-hy-droxy-2-isopropyl-1,1-dioxo-2H-1,2-benzothia-zine-3-carboxyl-ate.

Authors:  Muhammad Nadeem Arshad; Islam Ullah Khan; Muhammad Zia-Ur-Rehman; H M Rafique; K Travis Holman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-25

3.  Methyl 2-benzyl-4-hy-droxy-1,1-dioxo-1,2,3,4-tetra-hydro-1λ,2-benzothia-zine-3-carboxyl-ate.

Authors:  Muhammad Nadeem Arshad; Islam Ullah Khan; Muhammad Zia-Ur-Rehman; Muhammad Shafiq; Abdullah M Asiri
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-04

4.  6-Bromo-1-methyl-4-[2-(4-methyl-benzyl-idene)hydrazinyl-idene]-3H-2λ,1-benzothia-zine-2,2-dione.

Authors:  Muhammad Shafiq; Islam Ullah Khan; Muhammad Zia-Ur-Rehman; Muhammad Nadeem Arshad; Abdullah M Asiri
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23

5.  Methyl 4-hy-droxy-2-meth-oxy-carbonyl-methyl-1,1-dioxo-1,2-dihydro-1λ,2-benzothia-zine-3-carboxyl-ate.

Authors:  Muhammad Nadeem Arshad; Islam Ullah Khan; Muhammad Zia-Ur-Rehman; Sheikh Asrar Ahmad; H M Rafique
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-31

6.  4-Hydrazinyl-idene-1-methyl-3H-2λ,1-benzothia-zine-2,2-dione.

Authors:  Muhammad Shafiq; Islam Ullah Khan; Muhammad Zia-Ur-Rehman; Muhammad Nadeem Arshad; Abdullah M Asiri
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-16
  6 in total

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