| Literature DB >> 21579125 |
Muhammad Nadeem Arshad, Muhammad Zia-Ur-Rehman, Islam Ullah Khan.
Abstract
In the title compound, C(12)H(13)NO(5)S, the thia-zine ring adopts a half chair conformation and an intra-molecular O-H⋯O hydrogen bond generates an S(6) ring. In the crystal, the mol-ecules are linked by C-H⋯O inter-actions, leading to zigzag chains along the b axis.Entities:
Year: 2010 PMID: 21579125 PMCID: PMC2979064 DOI: 10.1107/S1600536810012365
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H13NO5S | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 733 reflections |
| θ = 2.6–17.3° | |
| µ = 0.27 mm−1 | |
| Cut needle, colourless | |
| 0.24 × 0.14 × 0.10 mm |
| Bruker KAPPA APEXII CCD diffractometer | 3148 independent reflections |
| Radiation source: fine-focus sealed tube | 1270 reflections with |
| graphite | |
| φ and ω scans | θmax = 28.3°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 14253 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.22 e Å−3 | |
| 3148 reflections | Δρmin = −0.25 e Å−3 |
| 176 parameters | Extinction correction: |
| 1 restraint | Extinction coefficient: 0.0062 (9) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 1464 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: 0.07 (12) |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S1 | 0.19292 (16) | 0.06952 (6) | 0.49242 (15) | 0.0514 (4) | |
| O1 | 0.0578 (4) | 0.10023 (16) | 0.3936 (4) | 0.0648 (10) | |
| O2 | 0.1809 (4) | 0.00107 (13) | 0.5198 (4) | 0.0716 (10) | |
| O3 | 0.3931 (4) | 0.26033 (12) | 0.5272 (4) | 0.0532 (8) | |
| H3 | 0.4444 | 0.2709 | 0.4458 | 0.080* | |
| O4 | 0.5638 (4) | 0.23848 (15) | 0.2618 (4) | 0.0563 (10) | |
| O5 | 0.5818 (4) | 0.13380 (14) | 0.1843 (4) | 0.0550 (9) | |
| N1 | 0.3974 (4) | 0.08716 (17) | 0.4241 (4) | 0.0413 (9) | |
| C1 | 0.1976 (6) | 0.1103 (2) | 0.6695 (5) | 0.0422 (11) | |
| C2 | 0.1285 (6) | 0.0824 (2) | 0.8054 (6) | 0.0536 (14) | |
| H2 | 0.0732 | 0.0416 | 0.8027 | 0.064* | |
| C3 | 0.1429 (6) | 0.1160 (3) | 0.9446 (6) | 0.0560 (15) | |
| H3A | 0.1030 | 0.0970 | 1.0370 | 0.067* | |
| C4 | 0.2163 (6) | 0.1776 (2) | 0.9459 (5) | 0.0589 (15) | |
| H4 | 0.2201 | 0.2009 | 1.0389 | 0.071* | |
| C5 | 0.2849 (6) | 0.2056 (2) | 0.8105 (6) | 0.0560 (14) | |
| H5 | 0.3341 | 0.2474 | 0.8139 | 0.067* | |
| C6 | 0.2811 (6) | 0.1722 (2) | 0.6708 (6) | 0.0396 (11) | |
| C7 | 0.3701 (5) | 0.1955 (2) | 0.5296 (6) | 0.0406 (11) | |
| C8 | 0.4294 (6) | 0.1557 (2) | 0.4160 (5) | 0.0372 (11) | |
| C9 | 0.5296 (6) | 0.1805 (3) | 0.2822 (5) | 0.0471 (12) | |
| C10 | 0.6951 (6) | 0.1538 (2) | 0.0543 (5) | 0.0707 (16) | |
| H10A | 0.6288 | 0.1848 | −0.0079 | 0.106* | |
| H10B | 0.7252 | 0.1165 | −0.0083 | 0.106* | |
| H10C | 0.8066 | 0.1733 | 0.0926 | 0.106* | |
| C11 | 0.5572 (6) | 0.0441 (2) | 0.4634 (5) | 0.0548 (15) | |
| H11A | 0.6478 | 0.0475 | 0.3805 | 0.066* | |
| H11B | 0.5143 | −0.0006 | 0.4657 | 0.066* | |
| C12 | 0.6504 (6) | 0.0588 (3) | 0.6154 (7) | 0.0840 (19) | |
| H12A | 0.6928 | 0.1031 | 0.6152 | 0.126* | |
| H12B | 0.7537 | 0.0301 | 0.6290 | 0.126* | |
| H12C | 0.5646 | 0.0527 | 0.6994 | 0.126* |
| S1 | 0.0554 (7) | 0.0474 (7) | 0.0516 (7) | −0.0144 (7) | 0.0019 (9) | −0.0055 (8) |
| O1 | 0.051 (2) | 0.083 (3) | 0.060 (2) | −0.0095 (18) | −0.010 (2) | −0.003 (2) |
| O2 | 0.097 (2) | 0.0399 (19) | 0.078 (3) | −0.0283 (16) | 0.014 (2) | −0.010 (2) |
| O3 | 0.065 (2) | 0.033 (2) | 0.061 (3) | −0.0045 (14) | 0.0097 (19) | 0.0007 (19) |
| O4 | 0.067 (2) | 0.042 (2) | 0.059 (2) | −0.0064 (17) | 0.0121 (19) | 0.0070 (18) |
| O5 | 0.068 (2) | 0.048 (2) | 0.050 (2) | 0.0000 (17) | 0.0208 (19) | −0.0001 (19) |
| N1 | 0.044 (2) | 0.037 (2) | 0.043 (2) | −0.0036 (17) | 0.0052 (18) | −0.0020 (18) |
| C1 | 0.038 (3) | 0.048 (3) | 0.040 (3) | 0.000 (2) | 0.000 (2) | −0.006 (3) |
| C2 | 0.038 (3) | 0.056 (4) | 0.066 (4) | −0.003 (2) | 0.009 (3) | 0.005 (3) |
| C3 | 0.056 (3) | 0.062 (4) | 0.050 (4) | 0.010 (3) | 0.012 (3) | 0.008 (3) |
| C4 | 0.062 (3) | 0.075 (4) | 0.039 (4) | 0.017 (3) | 0.006 (3) | −0.010 (3) |
| C5 | 0.061 (3) | 0.051 (3) | 0.056 (4) | 0.002 (3) | 0.003 (3) | −0.011 (3) |
| C6 | 0.039 (3) | 0.035 (3) | 0.045 (3) | 0.002 (2) | −0.001 (3) | 0.000 (3) |
| C7 | 0.044 (3) | 0.033 (3) | 0.045 (3) | −0.005 (2) | −0.003 (2) | −0.001 (3) |
| C8 | 0.040 (3) | 0.027 (3) | 0.045 (3) | −0.004 (2) | −0.005 (2) | 0.002 (2) |
| C9 | 0.043 (3) | 0.058 (3) | 0.040 (3) | −0.003 (3) | −0.006 (3) | −0.001 (3) |
| C10 | 0.086 (4) | 0.065 (4) | 0.061 (4) | −0.004 (3) | 0.036 (3) | 0.002 (3) |
| C11 | 0.057 (3) | 0.037 (3) | 0.070 (4) | 0.010 (2) | 0.005 (3) | 0.010 (3) |
| C12 | 0.069 (4) | 0.102 (5) | 0.081 (5) | 0.019 (3) | −0.013 (3) | 0.015 (4) |
| S1—O2 | 1.429 (3) | C4—C5 | 1.388 (6) |
| S1—O1 | 1.441 (3) | C4—H4 | 0.9300 |
| S1—N1 | 1.634 (3) | C5—C6 | 1.381 (6) |
| S1—C1 | 1.734 (5) | C5—H5 | 0.9300 |
| O3—C7 | 1.343 (4) | C6—C7 | 1.452 (6) |
| O3—H3 | 0.8200 | C7—C8 | 1.343 (5) |
| O4—C9 | 1.229 (5) | C8—C9 | 1.450 (6) |
| O5—C9 | 1.330 (5) | C10—H10A | 0.9600 |
| O5—C10 | 1.444 (5) | C10—H10B | 0.9600 |
| N1—C8 | 1.428 (5) | C10—H10C | 0.9600 |
| N1—C11 | 1.495 (5) | C11—C12 | 1.499 (6) |
| C1—C2 | 1.392 (6) | C11—H11A | 0.9700 |
| C1—C6 | 1.408 (5) | C11—H11B | 0.9700 |
| C2—C3 | 1.383 (6) | C12—H12A | 0.9600 |
| C2—H2 | 0.9300 | C12—H12B | 0.9600 |
| C3—C4 | 1.372 (6) | C12—H12C | 0.9600 |
| C3—H3A | 0.9300 | ||
| O2—S1—O1 | 119.1 (2) | C1—C6—C7 | 118.8 (4) |
| O2—S1—N1 | 109.44 (18) | C8—C7—O3 | 123.6 (4) |
| O1—S1—N1 | 107.97 (19) | C8—C7—C6 | 123.0 (4) |
| O2—S1—C1 | 109.4 (2) | O3—C7—C6 | 113.3 (4) |
| O1—S1—C1 | 108.4 (2) | C7—C8—N1 | 120.9 (4) |
| N1—S1—C1 | 100.9 (2) | C7—C8—C9 | 121.3 (4) |
| C7—O3—H3 | 109.5 | N1—C8—C9 | 117.9 (4) |
| C9—O5—C10 | 116.3 (3) | O4—C9—O5 | 123.6 (4) |
| C8—N1—C11 | 117.9 (3) | O4—C9—C8 | 123.7 (4) |
| C8—N1—S1 | 112.5 (3) | O5—C9—C8 | 112.7 (4) |
| C11—N1—S1 | 119.4 (3) | O5—C10—H10A | 109.5 |
| C2—C1—C6 | 121.3 (4) | O5—C10—H10B | 109.5 |
| C2—C1—S1 | 121.8 (4) | H10A—C10—H10B | 109.5 |
| C6—C1—S1 | 116.9 (4) | O5—C10—H10C | 109.5 |
| C3—C2—C1 | 119.3 (4) | H10A—C10—H10C | 109.5 |
| C3—C2—H2 | 120.4 | H10B—C10—H10C | 109.5 |
| C1—C2—H2 | 120.4 | N1—C11—C12 | 115.2 (4) |
| C4—C3—C2 | 119.8 (5) | N1—C11—H11A | 108.5 |
| C4—C3—H3A | 120.1 | C12—C11—H11A | 108.5 |
| C2—C3—H3A | 120.1 | N1—C11—H11B | 108.5 |
| C3—C4—C5 | 120.9 (4) | C12—C11—H11B | 108.5 |
| C3—C4—H4 | 119.5 | H11A—C11—H11B | 107.5 |
| C5—C4—H4 | 119.5 | C11—C12—H12A | 109.5 |
| C6—C5—C4 | 120.8 (4) | C11—C12—H12B | 109.5 |
| C6—C5—H5 | 119.6 | H12A—C12—H12B | 109.5 |
| C4—C5—H5 | 119.6 | C11—C12—H12C | 109.5 |
| C5—C6—C1 | 117.7 (4) | H12A—C12—H12C | 109.5 |
| C5—C6—C7 | 123.3 (4) | H12B—C12—H12C | 109.5 |
| O2—S1—N1—C8 | −171.2 (3) | S1—C1—C6—C7 | −4.9 (5) |
| O1—S1—N1—C8 | 57.8 (3) | C5—C6—C7—C8 | 153.4 (4) |
| C1—S1—N1—C8 | −55.9 (3) | C1—C6—C7—C8 | −21.9 (6) |
| O2—S1—N1—C11 | −26.6 (4) | C5—C6—C7—O3 | −24.2 (6) |
| O1—S1—N1—C11 | −157.6 (3) | C1—C6—C7—O3 | 160.5 (4) |
| C1—S1—N1—C11 | 88.7 (3) | O3—C7—C8—N1 | −178.8 (4) |
| O2—S1—C1—C2 | −22.5 (4) | C6—C7—C8—N1 | 3.8 (6) |
| O1—S1—C1—C2 | 108.9 (4) | O3—C7—C8—C9 | 2.0 (6) |
| N1—S1—C1—C2 | −137.8 (4) | C6—C7—C8—C9 | −175.4 (4) |
| O2—S1—C1—C6 | 155.2 (3) | C11—N1—C8—C7 | −105.7 (4) |
| O1—S1—C1—C6 | −73.4 (4) | S1—N1—C8—C7 | 39.5 (5) |
| N1—S1—C1—C6 | 39.9 (4) | C11—N1—C8—C9 | 73.6 (5) |
| C6—C1—C2—C3 | −0.3 (7) | S1—N1—C8—C9 | −141.2 (3) |
| S1—C1—C2—C3 | 177.3 (3) | C10—O5—C9—O4 | 4.3 (7) |
| C1—C2—C3—C4 | 3.3 (7) | C10—O5—C9—C8 | −175.3 (4) |
| C2—C3—C4—C5 | −3.2 (7) | C7—C8—C9—O4 | −1.5 (7) |
| C3—C4—C5—C6 | 0.0 (7) | N1—C8—C9—O4 | 179.3 (4) |
| C4—C5—C6—C1 | 2.9 (6) | C7—C8—C9—O5 | 178.1 (4) |
| C4—C5—C6—C7 | −172.4 (4) | N1—C8—C9—O5 | −1.1 (5) |
| C2—C1—C6—C5 | −2.8 (6) | C8—N1—C11—C12 | 57.6 (5) |
| S1—C1—C6—C5 | 179.5 (3) | S1—N1—C11—C12 | −85.1 (4) |
| C2—C1—C6—C7 | 172.8 (4) |
| H··· | ||||
| O3—H3···O4 | 0.82 | 1.92 | 2.628 (5) | 144 |
| C4—H4···O4i | 0.93 | 2.55 | 3.395 (5) | 152 |
| C10—H10B···O2ii | 0.96 | 2.52 | 3.320 (5) | 141 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3⋯O4 | 0.82 | 1.92 | 2.628 (5) | 144 |
| C4—H4⋯O4i | 0.93 | 2.55 | 3.395 (5) | 152 |
| C10—H10 | 0.96 | 2.52 | 3.320 (5) | 141 |
Symmetry codes: (i) ; (ii) .