Literature DB >> 21837192

Methyl 4-hy-droxy-2-isopropyl-1,1-dioxo-2H-1,2-benzothia-zine-3-carboxyl-ate.

Muhammad Nadeem Arshad, Islam Ullah Khan, Muhammad Zia-Ur-Rehman, H M Rafique, K Travis Holman.   

Abstract

In the crystal structure of the title mol-ecule, C(13)H(15)NO(5)S, the S and N atoms of the thia-zine ring exihibit the maximum deviations from the least-squares plane of 0.3008 (6) and 0.3280 (7) Å, respectively. The ring therefore adopts a half chair conformation. The thia-zine ring is twisted by an angle of 13.29 (7)° with respect to the aromatic ring. The isopropyl substituent is oriented at a dihedral angle of 53.2 (12)° with respect to the thia-zine ring. An intra-molecular O-H⋯O hydrogen bond occurs. Inter-molecular hydrogen bonding is observed in the crystal structure.

Entities:  

Year:  2011        PMID: 21837192      PMCID: PMC3152111          DOI: 10.1107/S1600536811024573

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthetic procedure, see: Arshad et al. (2011 ▶). For the biological activity of related compounds, see: Lombardino et al. (1971 ▶); Vidal et al. (2006 ▶); Turck et al. (1996) ▶; Zia-ur-Rehman et al. (2006 ▶). For related structures, see: Arshad et al. (2008 ▶, 2009 ▶). For graph-set analysis, see Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H15NO5S M = 297.32 Monoclinic, a = 11.3896 (6) Å b = 9.8421 (5) Å c = 12.7680 (7) Å β = 105.782 (1)° V = 1377.31 (13) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 100 K 0.43 × 0.27 × 0.27 mm

Data collection

Siemens SMART 1K diffractometer with a Bruker APEXII detector Absorption correction: multi-scan (SADABS; Bruker 2001 ▶) T min = 0.899, T max = 0.949 16137 measured reflections 3380 independent reflections 2967 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.092 S = 1.06 3380 reflections 187 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811024573/im2299sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024573/im2299Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811024573/im2299Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H15NO5SF(000) = 624
Mr = 297.32Dx = 1.434 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7059 reflections
a = 11.3896 (6) Åθ = 2.7–28.4°
b = 9.8421 (5) ŵ = 0.25 mm1
c = 12.7680 (7) ÅT = 100 K
β = 105.782 (1)°Needle, colorless
V = 1377.31 (13) Å30.43 × 0.27 × 0.27 mm
Z = 4
Siemens SMART 1K diffractometer with a Bruker APEXII detector3380 independent reflections
Radiation source: fine-focus sealed tube2967 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 28.4°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker 2001)h = −15→15
Tmin = 0.899, Tmax = 0.949k = −13→12
16137 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0464P)2 + 0.6953P] where P = (Fo2 + 2Fc2)/3
3380 reflections(Δ/σ)max < 0.001
187 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.40 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.45158 (3)0.80155 (3)0.24103 (3)0.01449 (10)
O10.41963 (9)0.73289 (10)0.32827 (8)0.0204 (2)
O20.46334 (9)0.72358 (10)0.14956 (8)0.0208 (2)
O40.32490 (9)1.14730 (11)−0.03579 (8)0.0239 (2)
O50.19108 (9)1.00457 (10)0.00818 (8)0.0206 (2)
O30.54813 (10)1.14548 (11)0.08196 (9)0.0235 (2)
N10.35223 (10)0.92191 (11)0.19471 (9)0.0148 (2)
C10.58852 (11)0.89070 (13)0.29337 (10)0.0144 (2)
C20.67716 (12)0.84231 (14)0.38274 (11)0.0167 (3)
H20.66460.76260.41740.020*
C30.78531 (12)0.91527 (15)0.41972 (11)0.0194 (3)
H30.84630.88340.47880.023*
C40.80243 (13)1.03493 (15)0.36896 (12)0.0213 (3)
H40.87451.08350.39500.026*
C50.71319 (13)1.08340 (15)0.27951 (11)0.0207 (3)
H50.72581.16390.24590.025*
C60.60455 (12)1.01095 (14)0.24018 (11)0.0163 (3)
C70.50866 (12)1.05859 (14)0.14559 (11)0.0171 (3)
C80.39091 (12)1.01442 (13)0.12351 (11)0.0159 (3)
C90.30108 (12)1.06172 (14)0.02519 (11)0.0180 (3)
C100.09884 (14)1.05700 (17)−0.08516 (12)0.0271 (3)
H10A0.08281.1505−0.07280.041*
H10B0.02521.0051−0.09540.041*
H10C0.12761.0500−0.14900.041*
C110.28252 (12)0.98889 (14)0.26547 (11)0.0181 (3)
H110.23541.06210.22140.022*
C130.36474 (14)1.05728 (17)0.36523 (12)0.0258 (3)
H13A0.40310.98940.41730.039*
H13B0.31701.11660.39700.039*
H13C0.42621.10910.34440.039*
C120.18920 (13)0.89440 (17)0.29256 (13)0.0263 (3)
H12A0.14520.84730.22800.039*
H12B0.13320.94660.32050.039*
H12C0.23030.82970.34640.039*
H3O0.482 (2)1.167 (2)0.0300 (17)0.039*
U11U22U33U12U13U23
S10.01430 (16)0.01178 (16)0.01607 (17)0.00005 (11)0.00187 (12)0.00036 (11)
O10.0185 (5)0.0178 (5)0.0237 (5)−0.0013 (4)0.0035 (4)0.0067 (4)
O20.0194 (5)0.0180 (5)0.0225 (5)0.0020 (4)0.0015 (4)−0.0060 (4)
O40.0277 (5)0.0229 (5)0.0188 (5)0.0008 (4)0.0023 (4)0.0069 (4)
O50.0186 (5)0.0226 (5)0.0176 (5)0.0017 (4)−0.0002 (4)0.0023 (4)
O30.0259 (5)0.0252 (5)0.0178 (5)−0.0055 (4)0.0033 (4)0.0078 (4)
N10.0158 (5)0.0139 (5)0.0145 (5)0.0027 (4)0.0041 (4)0.0021 (4)
C10.0147 (6)0.0149 (6)0.0138 (6)−0.0013 (5)0.0043 (5)−0.0027 (5)
C20.0189 (6)0.0158 (6)0.0157 (6)0.0011 (5)0.0055 (5)0.0003 (5)
C30.0172 (6)0.0237 (7)0.0157 (6)0.0019 (5)0.0020 (5)−0.0018 (5)
C40.0175 (6)0.0252 (7)0.0205 (7)−0.0058 (5)0.0042 (5)−0.0036 (6)
C50.0225 (7)0.0209 (7)0.0190 (7)−0.0056 (5)0.0063 (5)0.0019 (5)
C60.0179 (6)0.0180 (6)0.0134 (6)−0.0011 (5)0.0048 (5)−0.0003 (5)
C70.0228 (7)0.0153 (6)0.0137 (6)−0.0013 (5)0.0054 (5)0.0003 (5)
C80.0199 (6)0.0142 (6)0.0133 (6)0.0006 (5)0.0037 (5)0.0007 (5)
C90.0214 (6)0.0160 (6)0.0161 (6)0.0020 (5)0.0040 (5)−0.0008 (5)
C100.0232 (7)0.0304 (8)0.0220 (7)0.0037 (6)−0.0036 (6)0.0038 (6)
C110.0191 (6)0.0181 (6)0.0182 (7)0.0042 (5)0.0072 (5)0.0004 (5)
C130.0286 (8)0.0290 (8)0.0211 (7)0.0014 (6)0.0091 (6)−0.0053 (6)
C120.0212 (7)0.0291 (8)0.0314 (8)0.0017 (6)0.0117 (6)0.0037 (6)
S1—O11.4319 (10)C4—H40.9300
S1—O21.4338 (10)C5—C61.3978 (19)
S1—N11.6338 (11)C5—H50.9300
S1—C11.7556 (13)C6—C71.4675 (18)
O4—C91.2264 (17)C7—C81.3644 (19)
O5—C91.3361 (17)C8—C91.4632 (18)
O5—C101.4524 (16)C10—H10A0.9600
O3—C71.3387 (16)C10—H10B0.9600
O3—H3O0.88 (2)C10—H10C0.9600
N1—C81.4378 (17)C11—C131.518 (2)
N1—C111.5072 (16)C11—C121.521 (2)
C1—C21.3862 (18)C11—H110.9800
C1—C61.4009 (18)C13—H13A0.9600
C2—C31.3926 (19)C13—H13B0.9600
C2—H20.9300C13—H13C0.9600
C3—C41.383 (2)C12—H12A0.9600
C3—H30.9300C12—H12B0.9600
C4—C51.390 (2)C12—H12C0.9600
O1—S1—O2118.74 (6)C8—C7—C6122.54 (12)
O1—S1—N1109.04 (6)C7—C8—N1121.61 (12)
O2—S1—N1107.59 (6)C7—C8—C9119.64 (12)
O1—S1—C1109.10 (6)N1—C8—C9118.75 (11)
O2—S1—C1107.90 (6)O4—C9—O5123.06 (12)
N1—S1—C1103.39 (6)O4—C9—C8122.64 (13)
C9—O5—C10114.88 (11)O5—C9—C8114.29 (12)
C7—O3—H3O104.6 (14)O5—C10—H10A109.5
C8—N1—C11113.82 (10)O5—C10—H10B109.5
C8—N1—S1112.76 (9)H10A—C10—H10B109.5
C11—N1—S1121.74 (9)O5—C10—H10C109.5
C2—C1—C6121.84 (12)H10A—C10—H10C109.5
C2—C1—S1120.95 (10)H10B—C10—H10C109.5
C6—C1—S1117.20 (10)N1—C11—C13113.06 (11)
C1—C2—C3118.74 (13)N1—C11—C12112.55 (11)
C1—C2—H2120.6C13—C11—C12112.96 (12)
C3—C2—H2120.6N1—C11—H11105.8
C4—C3—C2120.30 (13)C13—C11—H11105.8
C4—C3—H3119.8C12—C11—H11105.8
C2—C3—H3119.8C11—C13—H13A109.5
C3—C4—C5120.81 (13)C11—C13—H13B109.5
C3—C4—H4119.6H13A—C13—H13B109.5
C5—C4—H4119.6C11—C13—H13C109.5
C4—C5—C6119.86 (13)H13A—C13—H13C109.5
C4—C5—H5120.1H13B—C13—H13C109.5
C6—C5—H5120.1C11—C12—H12A109.5
C5—C6—C1118.43 (12)C11—C12—H12B109.5
C5—C6—C7121.37 (12)H12A—C12—H12B109.5
C1—C6—C7120.19 (12)C11—C12—H12C109.5
O3—C7—C8123.48 (12)H12A—C12—H12C109.5
O3—C7—C6113.95 (12)H12B—C12—H12C109.5
O1—S1—N1—C8167.45 (9)C5—C6—C7—O320.73 (19)
O2—S1—N1—C8−62.53 (10)C1—C6—C7—O3−159.37 (12)
C1—S1—N1—C851.48 (10)C5—C6—C7—C8−161.14 (13)
O1—S1—N1—C1126.69 (11)C1—C6—C7—C818.8 (2)
O2—S1—N1—C11156.70 (10)O3—C7—C8—N1−179.43 (12)
C1—S1—N1—C11−89.28 (11)C6—C7—C8—N12.6 (2)
O1—S1—C1—C231.83 (13)O3—C7—C8—C90.6 (2)
O2—S1—C1—C2−98.46 (12)C6—C7—C8—C9−177.37 (12)
N1—S1—C1—C2147.76 (11)C11—N1—C8—C7102.87 (14)
O1—S1—C1—C6−149.00 (10)S1—N1—C8—C7−41.11 (16)
O2—S1—C1—C680.71 (11)C11—N1—C8—C9−77.14 (15)
N1—S1—C1—C6−33.07 (11)S1—N1—C8—C9138.88 (11)
C6—C1—C2—C3−0.5 (2)C10—O5—C9—O4−3.37 (19)
S1—C1—C2—C3178.64 (10)C10—O5—C9—C8176.14 (12)
C1—C2—C3—C41.1 (2)C7—C8—C9—O4−4.9 (2)
C2—C3—C4—C5−0.9 (2)N1—C8—C9—O4175.11 (12)
C3—C4—C5—C60.1 (2)C7—C8—C9—O5175.59 (12)
C4—C5—C6—C10.5 (2)N1—C8—C9—O5−4.40 (18)
C4—C5—C6—C7−179.64 (13)C8—N1—C11—C13−80.86 (14)
C2—C1—C6—C5−0.3 (2)S1—N1—C11—C1359.52 (15)
S1—C1—C6—C5−179.45 (10)C8—N1—C11—C12149.66 (12)
C2—C1—C6—C7179.81 (12)S1—N1—C11—C12−69.95 (14)
S1—C1—C6—C70.65 (17)
D—H···AD—HH···AD···AD—H···A
C4—H4···O2i0.932.493.311 (2)147
C3—H3···O2ii0.932.463.370 (2)165
C11—H11···O1iii0.982.393.317 (2)157
O3—H3O···O40.88 (2)1.77 (2)2.578 (2)151 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O2i0.932.493.311 (2)147
C3—H3⋯O2ii0.932.463.370 (2)165
C11—H11⋯O1iii0.982.393.317 (2)157
O3—H3O⋯O40.88 (2)1.77 (2)2.578 (2)151 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

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