Literature DB >> 21578790

3-Hydroxy-pyridinium hydrogen chloranilate monohydrate.

Kazuma Gotoh1, Hiroyuki Ishida.   

Abstract

In the title salt hydrate, C(5)H(6)NO(+)·C(6)HCl(2)O(4) (-)·H(2)O, the three components are held together by O-H⋯O and N-H⋯O hydrogen bonds, as well as by C-H⋯O contacts, forming a double-tape structure along the c axis. Within each tape, the pyridinium ring and the chloranilate ring are almost coplanar, forming a dihedral angle of 2.35 (7)°.

Entities:  

Year:  2009        PMID: 21578790      PMCID: PMC2971853          DOI: 10.1107/S1600536809046844

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see, for example: Gotoh et al. (2009a ▶,b ▶); Gotoh & Ishida (2009 ▶).

Experimental

Crystal data

C5H6NOC6HCl2O4 −·H2O M = 322.10 Triclinic, a = 7.4893 (13) Å b = 9.6650 (17) Å c = 9.9305 (17) Å α = 88.129 (5)° β = 68.404 (6)° γ = 67.980 (4)° V = 614.95 (18) Å3 Z = 2 Mo Kα radiation μ = 0.55 mm−1 T = 180 K 0.20 × 0.15 × 0.05 mm

Data collection

Rigaku R-AXIS RAPID-II diffractometer Absorption correction: numerical (; Higashi, 1999 ▶) T min = 0.907, T max = 0.973 12237 measured reflections 3572 independent reflections 2952 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.088 S = 1.07 3572 reflections 201 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.60 e Å−3 Δρmin = −0.29 e Å−3 Data collection: PROCESS-AUTO (Rigaku/MSC, 2004 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: CrystalStructure and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809046844/tk2567sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809046844/tk2567Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6NO+·C6HCl2O4·H2OZ = 2
Mr = 322.10F(000) = 328.00
Triclinic, P1Dx = 1.739 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71075 Å
a = 7.4893 (13) ÅCell parameters from 10001 reflections
b = 9.6650 (17) Åθ = 3.0–30.1°
c = 9.9305 (17) ŵ = 0.55 mm1
α = 88.129 (5)°T = 180 K
β = 68.404 (6)°Block, brown
γ = 67.980 (4)°0.20 × 0.15 × 0.05 mm
V = 614.95 (18) Å3
Rigaku R-AXIS RAPID-II diffractometer2952 reflections with I > 2σ(I)
Detector resolution: 10.00 pixels mm-1Rint = 0.025
ω scansθmax = 30.0°
Absorption correction: numerical (ABSCOR; Higashi, 1999)h = −10→10
Tmin = 0.907, Tmax = 0.973k = −13→13
12237 measured reflectionsl = −13→13
3572 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0481P)2 + 0.2238P] where P = (Fo2 + 2Fc2)/3
3572 reflections(Δ/σ)max < 0.001
201 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.74975 (5)0.30013 (3)0.52240 (3)0.01897 (9)
Cl20.76493 (5)0.94942 (3)0.44706 (4)0.02295 (10)
O10.77201 (16)0.47186 (11)0.26178 (10)0.0198 (2)
O20.72724 (17)0.51208 (11)0.74674 (10)0.0226 (2)
O30.73261 (17)0.78687 (12)0.71214 (11)0.0244 (2)
O40.76878 (18)0.74463 (12)0.23264 (11)0.0238 (2)
O50.7211 (2)0.21895 (12)0.23481 (11)0.0277 (2)
O60.8140 (2)0.62351 (14)−0.02703 (12)0.0284 (2)
N10.7338 (2)0.25226 (14)−0.13073 (13)0.0229 (2)
C10.76153 (19)0.53710 (14)0.37347 (13)0.0153 (2)
C20.7509 (2)0.47845 (13)0.50577 (13)0.0152 (2)
C30.7388 (2)0.55870 (14)0.62593 (13)0.0162 (2)
C40.7419 (2)0.71690 (14)0.60863 (14)0.0173 (2)
C50.7570 (2)0.77458 (14)0.46900 (14)0.0168 (2)
C60.7618 (2)0.69224 (14)0.35935 (14)0.0165 (2)
C70.7293 (2)0.29123 (15)−0.00035 (15)0.0199 (3)
H70.72720.38700.02150.024*
C80.7279 (2)0.18979 (15)0.10182 (14)0.0190 (3)
C90.7317 (2)0.05028 (15)0.06603 (15)0.0222 (3)
H90.7297−0.02030.13480.027*
C100.7383 (2)0.01496 (16)−0.06979 (16)0.0239 (3)
H100.7428−0.0805−0.09540.029*
C110.7382 (2)0.11952 (17)−0.16830 (15)0.0252 (3)
H110.74130.0970−0.26170.030*
H10.731 (3)0.328 (2)−0.188 (2)0.041 (6)*
H6A0.759 (4)0.633 (3)−0.084 (3)0.067 (8)*
H6B0.941 (5)0.594 (3)−0.081 (3)0.061 (8)*
H40.762 (4)0.690 (3)0.182 (3)0.063 (8)*
H50.739 (4)0.301 (3)0.235 (3)0.060 (7)*
U11U22U33U12U13U23
Cl10.02939 (17)0.01539 (14)0.01838 (15)−0.01195 (12)−0.01284 (12)0.00521 (11)
Cl20.03172 (18)0.01444 (15)0.02679 (18)−0.01173 (13)−0.01295 (14)0.00362 (11)
O10.0324 (5)0.0193 (4)0.0138 (4)−0.0142 (4)−0.0113 (4)0.0028 (3)
O20.0366 (6)0.0214 (5)0.0159 (4)−0.0141 (4)−0.0140 (4)0.0051 (4)
O30.0360 (6)0.0239 (5)0.0181 (5)−0.0149 (4)−0.0120 (4)−0.0016 (4)
O40.0443 (6)0.0186 (5)0.0171 (5)−0.0168 (4)−0.0166 (4)0.0069 (4)
O50.0531 (7)0.0237 (5)0.0208 (5)−0.0232 (5)−0.0218 (5)0.0071 (4)
O60.0357 (6)0.0369 (6)0.0159 (5)−0.0149 (5)−0.0124 (5)0.0023 (4)
N10.0314 (6)0.0236 (6)0.0174 (5)−0.0136 (5)−0.0106 (5)0.0073 (4)
C10.0189 (6)0.0146 (5)0.0145 (5)−0.0077 (4)−0.0076 (4)0.0027 (4)
C20.0212 (6)0.0130 (5)0.0145 (6)−0.0081 (4)−0.0088 (5)0.0029 (4)
C30.0192 (6)0.0162 (5)0.0152 (6)−0.0077 (5)−0.0079 (5)0.0023 (4)
C40.0204 (6)0.0180 (6)0.0157 (6)−0.0086 (5)−0.0080 (5)0.0011 (4)
C50.0218 (6)0.0128 (5)0.0185 (6)−0.0086 (5)−0.0088 (5)0.0030 (4)
C60.0221 (6)0.0152 (5)0.0150 (6)−0.0091 (5)−0.0086 (5)0.0043 (4)
C70.0272 (7)0.0171 (6)0.0191 (6)−0.0114 (5)−0.0101 (5)0.0034 (5)
C80.0261 (7)0.0181 (6)0.0170 (6)−0.0111 (5)−0.0103 (5)0.0026 (5)
C90.0340 (7)0.0181 (6)0.0202 (6)−0.0134 (5)−0.0134 (6)0.0049 (5)
C100.0335 (7)0.0206 (6)0.0219 (7)−0.0137 (6)−0.0118 (6)0.0002 (5)
C110.0344 (8)0.0295 (7)0.0162 (6)−0.0157 (6)−0.0113 (5)0.0023 (5)
Cl1—C21.7289 (13)C1—C21.4007 (17)
Cl2—C51.7172 (13)C1—C61.5020 (17)
O1—C11.2564 (15)C2—C31.4006 (17)
O2—C31.2519 (15)C3—C41.5412 (18)
O3—C41.2149 (16)C4—C51.4587 (18)
O4—C61.3313 (15)C5—C61.3514 (18)
O4—H40.76 (3)C7—C81.3877 (18)
O5—C81.3381 (16)C7—H70.9500
O5—H50.85 (3)C8—C91.3930 (18)
O6—H6A0.80 (3)C9—C101.3808 (19)
O6—H6B0.84 (3)C9—H90.9500
N1—C111.3330 (19)C10—C111.383 (2)
N1—C71.3452 (18)C10—H100.9500
N1—H10.91 (2)C11—H110.9500
C6—O4—H4111 (2)C4—C5—Cl2119.01 (9)
C8—O5—H5106.0 (18)O4—C6—C5121.39 (11)
H6A—O6—H6B103 (3)O4—C6—C1116.69 (11)
C11—N1—C7123.32 (12)C5—C6—C1121.91 (11)
C11—N1—H1125.1 (14)N1—C7—C8119.14 (12)
C7—N1—H1111.6 (14)N1—C7—H7120.4
O1—C1—C2126.22 (11)C8—C7—H7120.4
O1—C1—C6115.16 (11)O5—C8—C7123.49 (12)
C2—C1—C6118.62 (11)O5—C8—C9117.59 (12)
C3—C2—C1122.83 (11)C7—C8—C9118.92 (12)
C3—C2—Cl1118.48 (9)C10—C9—C8119.78 (13)
C1—C2—Cl1118.68 (9)C10—C9—H9120.1
O2—C3—C2125.37 (12)C8—C9—H9120.1
O2—C3—C4116.88 (11)C9—C10—C11119.55 (13)
C2—C3—C4117.75 (11)C9—C10—H10120.2
O3—C4—C5123.42 (12)C11—C10—H10120.2
O3—C4—C3118.12 (11)N1—C11—C10119.29 (13)
C5—C4—C3118.46 (10)N1—C11—H11120.4
C6—C5—C4120.38 (11)C10—C11—H11120.4
C6—C5—Cl2120.61 (10)
O1—C1—C2—C3−179.78 (13)C4—C5—C6—O4177.85 (12)
C6—C1—C2—C30.53 (19)Cl2—C5—C6—O4−1.29 (19)
O1—C1—C2—Cl1−0.50 (19)C4—C5—C6—C1−2.7 (2)
C6—C1—C2—Cl1179.80 (9)Cl2—C5—C6—C1178.13 (10)
C1—C2—C3—O2179.38 (13)O1—C1—C6—O41.29 (17)
Cl1—C2—C3—O20.10 (19)C2—C1—C6—O4−178.98 (12)
C1—C2—C3—C4−1.25 (19)O1—C1—C6—C5−178.16 (12)
Cl1—C2—C3—C4179.47 (9)C2—C1—C6—C51.57 (19)
O2—C3—C4—O3−0.19 (19)C11—N1—C7—C8−0.4 (2)
C2—C3—C4—O3−179.62 (12)N1—C7—C8—O5−179.23 (13)
O2—C3—C4—C5179.52 (12)N1—C7—C8—C90.2 (2)
C2—C3—C4—C50.09 (18)O5—C8—C9—C10179.88 (14)
O3—C4—C5—C6−178.41 (13)C7—C8—C9—C100.5 (2)
C3—C4—C5—C61.89 (19)C8—C9—C10—C11−0.9 (2)
O3—C4—C5—Cl20.74 (19)C7—N1—C11—C100.0 (2)
C3—C4—C5—Cl2−178.96 (9)C9—C10—C11—N10.6 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.911 (18)1.867 (18)2.7461 (17)161.4 (18)
O4—H4···O10.77 (3)2.21 (3)2.6348 (16)115 (2)
O4—H4···O60.77 (3)2.04 (3)2.7187 (17)147 (3)
O5—H5···O10.85 (3)1.80 (3)2.6474 (17)172 (3)
O6—H6A···O2i0.80 (3)2.21 (3)2.8959 (18)144 (3)
O6—H6A···O3i0.80 (3)2.50 (3)3.1220 (17)136 (3)
O6—H6B···O1ii0.84 (4)2.11 (3)2.9281 (18)164 (3)
C7—H7···O60.952.593.484 (2)157
C9—H9···O4iii0.952.403.3084 (18)160
C10—H10···O3iv0.952.383.163 (2)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2i 0.911 (18)1.867 (18)2.7461 (17)161.4 (18)
O4—H4⋯O10.77 (3)2.21 (3)2.6348 (16)115 (2)
O4—H4⋯O60.77 (3)2.04 (3)2.7187 (17)147 (3)
O5—H5⋯O10.85 (3)1.80 (3)2.6474 (17)172 (3)
O6—H6A⋯O2i 0.80 (3)2.21 (3)2.8959 (18)144 (3)
O6—H6A⋯O3i 0.80 (3)2.50 (3)3.1220 (17)136 (3)
O6—H6B⋯O1ii 0.84 (4)2.11 (3)2.9281 (18)164 (3)
C7—H7⋯O60.952.593.484 (2)157
C9—H9⋯O4iii 0.952.403.3084 (18)160
C10—H10⋯O3iv 0.952.383.163 (2)140

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Hydrogen-bonded structures of the isomeric 2-, 3- and 4-carbamoylpyridinium hydrogen chloranilates.

Authors:  Kazuma Gotoh; Hirokazu Nagoshi; Hiroyuki Ishida
Journal:  Acta Crystallogr C       Date:  2009-05-02       Impact factor: 1.172

3.  Pyridine-3-carbonitrile-chloranilic acid-acetonitrile (2/1/2).

Authors:  Kazuma Gotoh; Hiroyuki Ishida
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-16

4.  2-Carboxy-pyridinium hydrogen chloranilate.

Authors:  Kazuma Gotoh; Hirokazu Nagoshi; Hiroyuki Ishida
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-28

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  Crystal structures of three hydrogen-bonded 1:2 compounds of chloranilic acid with 2-pyridone, 3-hy-droxy-pyridine and 4-hyroxypyridine.

Authors:  Kazuma Gotoh; Hiroyuki Ishida
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-09-29
  1 in total

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