| Literature DB >> 21578790 |
Kazuma Gotoh1, Hiroyuki Ishida.
Abstract
In the title salt hydrate, C(5)H(6)NO(+)·C(6)HCl(2)O(4) (-)·H(2)O, the three components are held together by O-H⋯O and N-H⋯O hydrogen bonds, as well as by C-H⋯O contacts, forming a double-tape structure along the c axis. Within each tape, the pyridinium ring and the chloranilate ring are almost coplanar, forming a dihedral angle of 2.35 (7)°.Entities:
Year: 2009 PMID: 21578790 PMCID: PMC2971853 DOI: 10.1107/S1600536809046844
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H6NO+·C6HCl2O4−·H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 10001 reflections | |
| θ = 3.0–30.1° | |
| µ = 0.55 mm−1 | |
| α = 88.129 (5)° | |
| β = 68.404 (6)° | Block, brown |
| γ = 67.980 (4)° | 0.20 × 0.15 × 0.05 mm |
| Rigaku R-AXIS RAPID-II diffractometer | 2952 reflections with |
| Detector resolution: 10.00 pixels mm-1 | |
| ω scans | θmax = 30.0° |
| Absorption correction: numerical ( | |
| 12237 measured reflections | |
| 3572 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3572 reflections | (Δ/σ)max < 0.001 |
| 201 parameters | Δρmax = 0.60 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.74975 (5) | 0.30013 (3) | 0.52240 (3) | 0.01897 (9) | |
| Cl2 | 0.76493 (5) | 0.94942 (3) | 0.44706 (4) | 0.02295 (10) | |
| O1 | 0.77201 (16) | 0.47186 (11) | 0.26178 (10) | 0.0198 (2) | |
| O2 | 0.72724 (17) | 0.51208 (11) | 0.74674 (10) | 0.0226 (2) | |
| O3 | 0.73261 (17) | 0.78687 (12) | 0.71214 (11) | 0.0244 (2) | |
| O4 | 0.76878 (18) | 0.74463 (12) | 0.23264 (11) | 0.0238 (2) | |
| O5 | 0.7211 (2) | 0.21895 (12) | 0.23481 (11) | 0.0277 (2) | |
| O6 | 0.8140 (2) | 0.62351 (14) | −0.02703 (12) | 0.0284 (2) | |
| N1 | 0.7338 (2) | 0.25226 (14) | −0.13073 (13) | 0.0229 (2) | |
| C1 | 0.76153 (19) | 0.53710 (14) | 0.37347 (13) | 0.0153 (2) | |
| C2 | 0.7509 (2) | 0.47845 (13) | 0.50577 (13) | 0.0152 (2) | |
| C3 | 0.7388 (2) | 0.55870 (14) | 0.62593 (13) | 0.0162 (2) | |
| C4 | 0.7419 (2) | 0.71690 (14) | 0.60863 (14) | 0.0173 (2) | |
| C5 | 0.7570 (2) | 0.77458 (14) | 0.46900 (14) | 0.0168 (2) | |
| C6 | 0.7618 (2) | 0.69224 (14) | 0.35935 (14) | 0.0165 (2) | |
| C7 | 0.7293 (2) | 0.29123 (15) | −0.00035 (15) | 0.0199 (3) | |
| H7 | 0.7272 | 0.3870 | 0.0215 | 0.024* | |
| C8 | 0.7279 (2) | 0.18979 (15) | 0.10182 (14) | 0.0190 (3) | |
| C9 | 0.7317 (2) | 0.05028 (15) | 0.06603 (15) | 0.0222 (3) | |
| H9 | 0.7297 | −0.0203 | 0.1348 | 0.027* | |
| C10 | 0.7383 (2) | 0.01496 (16) | −0.06979 (16) | 0.0239 (3) | |
| H10 | 0.7428 | −0.0805 | −0.0954 | 0.029* | |
| C11 | 0.7382 (2) | 0.11952 (17) | −0.16830 (15) | 0.0252 (3) | |
| H11 | 0.7413 | 0.0970 | −0.2617 | 0.030* | |
| H1 | 0.731 (3) | 0.328 (2) | −0.188 (2) | 0.041 (6)* | |
| H6A | 0.759 (4) | 0.633 (3) | −0.084 (3) | 0.067 (8)* | |
| H6B | 0.941 (5) | 0.594 (3) | −0.081 (3) | 0.061 (8)* | |
| H4 | 0.762 (4) | 0.690 (3) | 0.182 (3) | 0.063 (8)* | |
| H5 | 0.739 (4) | 0.301 (3) | 0.235 (3) | 0.060 (7)* |
| Cl1 | 0.02939 (17) | 0.01539 (14) | 0.01838 (15) | −0.01195 (12) | −0.01284 (12) | 0.00521 (11) |
| Cl2 | 0.03172 (18) | 0.01444 (15) | 0.02679 (18) | −0.01173 (13) | −0.01295 (14) | 0.00362 (11) |
| O1 | 0.0324 (5) | 0.0193 (4) | 0.0138 (4) | −0.0142 (4) | −0.0113 (4) | 0.0028 (3) |
| O2 | 0.0366 (6) | 0.0214 (5) | 0.0159 (4) | −0.0141 (4) | −0.0140 (4) | 0.0051 (4) |
| O3 | 0.0360 (6) | 0.0239 (5) | 0.0181 (5) | −0.0149 (4) | −0.0120 (4) | −0.0016 (4) |
| O4 | 0.0443 (6) | 0.0186 (5) | 0.0171 (5) | −0.0168 (4) | −0.0166 (4) | 0.0069 (4) |
| O5 | 0.0531 (7) | 0.0237 (5) | 0.0208 (5) | −0.0232 (5) | −0.0218 (5) | 0.0071 (4) |
| O6 | 0.0357 (6) | 0.0369 (6) | 0.0159 (5) | −0.0149 (5) | −0.0124 (5) | 0.0023 (4) |
| N1 | 0.0314 (6) | 0.0236 (6) | 0.0174 (5) | −0.0136 (5) | −0.0106 (5) | 0.0073 (4) |
| C1 | 0.0189 (6) | 0.0146 (5) | 0.0145 (5) | −0.0077 (4) | −0.0076 (4) | 0.0027 (4) |
| C2 | 0.0212 (6) | 0.0130 (5) | 0.0145 (6) | −0.0081 (4) | −0.0088 (5) | 0.0029 (4) |
| C3 | 0.0192 (6) | 0.0162 (5) | 0.0152 (6) | −0.0077 (5) | −0.0079 (5) | 0.0023 (4) |
| C4 | 0.0204 (6) | 0.0180 (6) | 0.0157 (6) | −0.0086 (5) | −0.0080 (5) | 0.0011 (4) |
| C5 | 0.0218 (6) | 0.0128 (5) | 0.0185 (6) | −0.0086 (5) | −0.0088 (5) | 0.0030 (4) |
| C6 | 0.0221 (6) | 0.0152 (5) | 0.0150 (6) | −0.0091 (5) | −0.0086 (5) | 0.0043 (4) |
| C7 | 0.0272 (7) | 0.0171 (6) | 0.0191 (6) | −0.0114 (5) | −0.0101 (5) | 0.0034 (5) |
| C8 | 0.0261 (7) | 0.0181 (6) | 0.0170 (6) | −0.0111 (5) | −0.0103 (5) | 0.0026 (5) |
| C9 | 0.0340 (7) | 0.0181 (6) | 0.0202 (6) | −0.0134 (5) | −0.0134 (6) | 0.0049 (5) |
| C10 | 0.0335 (7) | 0.0206 (6) | 0.0219 (7) | −0.0137 (6) | −0.0118 (6) | 0.0002 (5) |
| C11 | 0.0344 (8) | 0.0295 (7) | 0.0162 (6) | −0.0157 (6) | −0.0113 (5) | 0.0023 (5) |
| Cl1—C2 | 1.7289 (13) | C1—C2 | 1.4007 (17) |
| Cl2—C5 | 1.7172 (13) | C1—C6 | 1.5020 (17) |
| O1—C1 | 1.2564 (15) | C2—C3 | 1.4006 (17) |
| O2—C3 | 1.2519 (15) | C3—C4 | 1.5412 (18) |
| O3—C4 | 1.2149 (16) | C4—C5 | 1.4587 (18) |
| O4—C6 | 1.3313 (15) | C5—C6 | 1.3514 (18) |
| O4—H4 | 0.76 (3) | C7—C8 | 1.3877 (18) |
| O5—C8 | 1.3381 (16) | C7—H7 | 0.9500 |
| O5—H5 | 0.85 (3) | C8—C9 | 1.3930 (18) |
| O6—H6A | 0.80 (3) | C9—C10 | 1.3808 (19) |
| O6—H6B | 0.84 (3) | C9—H9 | 0.9500 |
| N1—C11 | 1.3330 (19) | C10—C11 | 1.383 (2) |
| N1—C7 | 1.3452 (18) | C10—H10 | 0.9500 |
| N1—H1 | 0.91 (2) | C11—H11 | 0.9500 |
| C6—O4—H4 | 111 (2) | C4—C5—Cl2 | 119.01 (9) |
| C8—O5—H5 | 106.0 (18) | O4—C6—C5 | 121.39 (11) |
| H6A—O6—H6B | 103 (3) | O4—C6—C1 | 116.69 (11) |
| C11—N1—C7 | 123.32 (12) | C5—C6—C1 | 121.91 (11) |
| C11—N1—H1 | 125.1 (14) | N1—C7—C8 | 119.14 (12) |
| C7—N1—H1 | 111.6 (14) | N1—C7—H7 | 120.4 |
| O1—C1—C2 | 126.22 (11) | C8—C7—H7 | 120.4 |
| O1—C1—C6 | 115.16 (11) | O5—C8—C7 | 123.49 (12) |
| C2—C1—C6 | 118.62 (11) | O5—C8—C9 | 117.59 (12) |
| C3—C2—C1 | 122.83 (11) | C7—C8—C9 | 118.92 (12) |
| C3—C2—Cl1 | 118.48 (9) | C10—C9—C8 | 119.78 (13) |
| C1—C2—Cl1 | 118.68 (9) | C10—C9—H9 | 120.1 |
| O2—C3—C2 | 125.37 (12) | C8—C9—H9 | 120.1 |
| O2—C3—C4 | 116.88 (11) | C9—C10—C11 | 119.55 (13) |
| C2—C3—C4 | 117.75 (11) | C9—C10—H10 | 120.2 |
| O3—C4—C5 | 123.42 (12) | C11—C10—H10 | 120.2 |
| O3—C4—C3 | 118.12 (11) | N1—C11—C10 | 119.29 (13) |
| C5—C4—C3 | 118.46 (10) | N1—C11—H11 | 120.4 |
| C6—C5—C4 | 120.38 (11) | C10—C11—H11 | 120.4 |
| C6—C5—Cl2 | 120.61 (10) | ||
| O1—C1—C2—C3 | −179.78 (13) | C4—C5—C6—O4 | 177.85 (12) |
| C6—C1—C2—C3 | 0.53 (19) | Cl2—C5—C6—O4 | −1.29 (19) |
| O1—C1—C2—Cl1 | −0.50 (19) | C4—C5—C6—C1 | −2.7 (2) |
| C6—C1—C2—Cl1 | 179.80 (9) | Cl2—C5—C6—C1 | 178.13 (10) |
| C1—C2—C3—O2 | 179.38 (13) | O1—C1—C6—O4 | 1.29 (17) |
| Cl1—C2—C3—O2 | 0.10 (19) | C2—C1—C6—O4 | −178.98 (12) |
| C1—C2—C3—C4 | −1.25 (19) | O1—C1—C6—C5 | −178.16 (12) |
| Cl1—C2—C3—C4 | 179.47 (9) | C2—C1—C6—C5 | 1.57 (19) |
| O2—C3—C4—O3 | −0.19 (19) | C11—N1—C7—C8 | −0.4 (2) |
| C2—C3—C4—O3 | −179.62 (12) | N1—C7—C8—O5 | −179.23 (13) |
| O2—C3—C4—C5 | 179.52 (12) | N1—C7—C8—C9 | 0.2 (2) |
| C2—C3—C4—C5 | 0.09 (18) | O5—C8—C9—C10 | 179.88 (14) |
| O3—C4—C5—C6 | −178.41 (13) | C7—C8—C9—C10 | 0.5 (2) |
| C3—C4—C5—C6 | 1.89 (19) | C8—C9—C10—C11 | −0.9 (2) |
| O3—C4—C5—Cl2 | 0.74 (19) | C7—N1—C11—C10 | 0.0 (2) |
| C3—C4—C5—Cl2 | −178.96 (9) | C9—C10—C11—N1 | 0.6 (2) |
| H··· | ||||
| N1—H1···O2i | 0.911 (18) | 1.867 (18) | 2.7461 (17) | 161.4 (18) |
| O4—H4···O1 | 0.77 (3) | 2.21 (3) | 2.6348 (16) | 115 (2) |
| O4—H4···O6 | 0.77 (3) | 2.04 (3) | 2.7187 (17) | 147 (3) |
| O5—H5···O1 | 0.85 (3) | 1.80 (3) | 2.6474 (17) | 172 (3) |
| O6—H6A···O2i | 0.80 (3) | 2.21 (3) | 2.8959 (18) | 144 (3) |
| O6—H6A···O3i | 0.80 (3) | 2.50 (3) | 3.1220 (17) | 136 (3) |
| O6—H6B···O1ii | 0.84 (4) | 2.11 (3) | 2.9281 (18) | 164 (3) |
| C7—H7···O6 | 0.95 | 2.59 | 3.484 (2) | 157 |
| C9—H9···O4iii | 0.95 | 2.40 | 3.3084 (18) | 160 |
| C10—H10···O3iv | 0.95 | 2.38 | 3.163 (2) | 140 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O2i | 0.911 (18) | 1.867 (18) | 2.7461 (17) | 161.4 (18) |
| O4—H4⋯O1 | 0.77 (3) | 2.21 (3) | 2.6348 (16) | 115 (2) |
| O4—H4⋯O6 | 0.77 (3) | 2.04 (3) | 2.7187 (17) | 147 (3) |
| O5—H5⋯O1 | 0.85 (3) | 1.80 (3) | 2.6474 (17) | 172 (3) |
| O6—H6 | 0.80 (3) | 2.21 (3) | 2.8959 (18) | 144 (3) |
| O6—H6 | 0.80 (3) | 2.50 (3) | 3.1220 (17) | 136 (3) |
| O6—H6 | 0.84 (4) | 2.11 (3) | 2.9281 (18) | 164 (3) |
| C7—H7⋯O6 | 0.95 | 2.59 | 3.484 (2) | 157 |
| C9—H9⋯O4iii | 0.95 | 2.40 | 3.3084 (18) | 160 |
| C10—H10⋯O3iv | 0.95 | 2.38 | 3.163 (2) | 140 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .