| Literature DB >> 21577921 |
Kazuma Gotoh1, Hiroyuki Ishida.
Abstract
In the crystal structure of the title compound, 2C(6)H(4)N(2)·C(6)H(2)Cl(2)O(4)·2C(2)H(3)N, the two symmetry-related pyridine-3-carbonitrile mol-ecules are linked to either side of a chloranilic acid (systematic name: 2,5-dichloro-3,6-dihydr-oxy-1,4-benzoquinone) mol-ecule via inter-molecular O-H⋯N hydrogen bonds, giving a centrosymmetric 2:1 unit. The dihedral angle between the pyridine ring and the chloranilic acid plane is 26.71 (6)°. In addition, the two acetonitrile mol-ecules are linked to either side of the 2:1 unit through C-H⋯N hydrogen bonds, forming a 2:1:2 aggregate. These 2:1:2 aggregates are further linked by weak inter-molecular C-H⋯N and C-H⋯O hydrogen bonds, forming a tape along the c axis.Entities:
Year: 2009 PMID: 21577921 PMCID: PMC2970440 DOI: 10.1107/S1600536809036605
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C6H4N2·C6H2Cl2O4·2C2H3N | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 6412 reflections | |
| θ = 3.1–30.1° | |
| µ = 0.33 mm−1 | |
| α = 105.302 (4)° | |
| β = 90.0058 (14)° | Block, brown |
| γ = 90.847 (5)° | 0.32 × 0.25 × 0.15 mm |
| Rigaku RAXIS-RAPID II diffractometer | 2592 reflections with |
| Detector resolution: 10.00 pixels mm-1 | |
| ω scans | θmax = 30.0° |
| Absorption correction: numerical ( | |
| 7721 measured reflections | |
| 3232 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3232 reflections | (Δ/σ)max < 0.001 |
| 159 parameters | Δρmax = 0.44 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.74850 (9) | −0.11634 (3) | 0.17747 (2) | 0.02647 (10) | |
| O1 | 1.1404 (3) | −0.24034 (9) | −0.00816 (7) | 0.0278 (2) | |
| O2 | 0.6357 (3) | 0.14675 (10) | 0.16065 (7) | 0.0294 (2) | |
| N1 | 0.4384 (3) | 0.38133 (11) | 0.18840 (9) | 0.0268 (2) | |
| N2 | 0.2005 (4) | 0.63890 (12) | 0.52232 (10) | 0.0347 (3) | |
| N3 | −0.2867 (4) | 0.85277 (13) | 0.41743 (11) | 0.0400 (3) | |
| C1 | 1.0708 (3) | −0.12968 (12) | −0.00163 (9) | 0.0213 (2) | |
| C2 | 0.8789 (3) | −0.04984 (12) | 0.08193 (9) | 0.0208 (2) | |
| C3 | 0.8076 (3) | 0.07272 (12) | 0.08605 (9) | 0.0215 (2) | |
| C4 | 0.3922 (4) | 0.43073 (12) | 0.28796 (10) | 0.0254 (3) | |
| H4 | 0.4423 | 0.3805 | 0.3335 | 0.031* | |
| C5 | 0.2725 (3) | 0.55390 (12) | 0.32762 (10) | 0.0233 (3) | |
| C6 | 0.1973 (4) | 0.62808 (13) | 0.26185 (10) | 0.0265 (3) | |
| H6 | 0.1169 | 0.7124 | 0.2871 | 0.032* | |
| C7 | 0.2431 (4) | 0.57525 (13) | 0.15812 (11) | 0.0281 (3) | |
| H7 | 0.1922 | 0.6227 | 0.1106 | 0.034* | |
| C8 | 0.3640 (4) | 0.45244 (13) | 0.12482 (10) | 0.0270 (3) | |
| H8 | 0.3956 | 0.4171 | 0.0537 | 0.032* | |
| C9 | 0.2324 (4) | 0.60218 (13) | 0.43620 (10) | 0.0263 (3) | |
| C10 | −0.2753 (4) | 0.87366 (14) | 0.50394 (12) | 0.0310 (3) | |
| C11 | −0.2586 (4) | 0.90013 (16) | 0.61421 (12) | 0.0365 (3) | |
| H11A | −0.0933 | 0.8436 | 0.6332 | 0.055* | |
| H11B | −0.4846 | 0.8857 | 0.6406 | 0.055* | |
| H11C | −0.1869 | 0.9889 | 0.6432 | 0.055* | |
| H2 | 0.596 (7) | 0.226 (3) | 0.152 (2) | 0.082 (9)* |
| Cl1 | 0.03569 (18) | 0.02348 (16) | 0.02309 (16) | 0.00415 (12) | 0.00557 (12) | 0.01100 (11) |
| O1 | 0.0404 (5) | 0.0181 (4) | 0.0255 (5) | 0.0062 (4) | 0.0045 (4) | 0.0065 (4) |
| O2 | 0.0445 (6) | 0.0199 (5) | 0.0242 (5) | 0.0089 (4) | 0.0100 (4) | 0.0058 (4) |
| N1 | 0.0349 (6) | 0.0203 (5) | 0.0252 (5) | 0.0066 (4) | 0.0041 (5) | 0.0061 (4) |
| N2 | 0.0488 (8) | 0.0284 (6) | 0.0272 (6) | 0.0078 (5) | 0.0018 (5) | 0.0075 (5) |
| N3 | 0.0512 (8) | 0.0302 (7) | 0.0380 (7) | 0.0070 (6) | 0.0065 (6) | 0.0076 (5) |
| C1 | 0.0267 (6) | 0.0180 (5) | 0.0194 (5) | 0.0010 (4) | −0.0019 (5) | 0.0053 (4) |
| C2 | 0.0272 (6) | 0.0186 (6) | 0.0174 (5) | 0.0009 (4) | 0.0006 (5) | 0.0060 (4) |
| C3 | 0.0268 (6) | 0.0188 (6) | 0.0188 (5) | 0.0017 (4) | −0.0010 (5) | 0.0045 (4) |
| C4 | 0.0321 (7) | 0.0199 (6) | 0.0254 (6) | 0.0057 (5) | 0.0015 (5) | 0.0077 (5) |
| C5 | 0.0272 (6) | 0.0199 (6) | 0.0226 (6) | 0.0024 (5) | 0.0009 (5) | 0.0049 (5) |
| C6 | 0.0327 (7) | 0.0188 (6) | 0.0286 (7) | 0.0065 (5) | 0.0026 (5) | 0.0070 (5) |
| C7 | 0.0365 (7) | 0.0238 (6) | 0.0261 (6) | 0.0066 (5) | 0.0010 (5) | 0.0100 (5) |
| C8 | 0.0348 (7) | 0.0229 (6) | 0.0235 (6) | 0.0048 (5) | 0.0036 (5) | 0.0062 (5) |
| C9 | 0.0316 (7) | 0.0205 (6) | 0.0273 (6) | 0.0052 (5) | 0.0015 (5) | 0.0067 (5) |
| C10 | 0.0307 (7) | 0.0227 (6) | 0.0387 (8) | 0.0033 (5) | 0.0063 (6) | 0.0061 (5) |
| C11 | 0.0407 (8) | 0.0335 (8) | 0.0329 (8) | 0.0040 (6) | 0.0042 (6) | 0.0044 (6) |
| Cl1—C2 | 1.7200 (13) | C4—H4 | 0.9500 |
| O1—C1 | 1.2201 (15) | C5—C6 | 1.3884 (18) |
| O2—C3 | 1.3099 (15) | C5—C9 | 1.4399 (18) |
| O2—H2 | 0.91 (3) | C6—C7 | 1.3883 (19) |
| N1—C4 | 1.3316 (17) | C6—H6 | 0.9500 |
| N1—C8 | 1.3387 (18) | C7—C8 | 1.3848 (19) |
| N2—C9 | 1.1406 (18) | C7—H7 | 0.9500 |
| N3—C10 | 1.138 (2) | C8—H8 | 0.9500 |
| C1—C2 | 1.4521 (17) | C10—C11 | 1.451 (2) |
| C1—C3i | 1.5153 (18) | C11—H11A | 0.9800 |
| C2—C3 | 1.3546 (17) | C11—H11B | 0.9800 |
| C3—C1i | 1.5153 (18) | C11—H11C | 0.9800 |
| C4—C5 | 1.3955 (18) | ||
| C3—O2—H2 | 114.0 (17) | C7—C6—C5 | 117.96 (12) |
| C4—N1—C8 | 118.49 (11) | C7—C6—H6 | 121.0 |
| O1—C1—C2 | 123.93 (12) | C5—C6—H6 | 121.0 |
| O1—C1—C3i | 117.75 (11) | C8—C7—C6 | 119.07 (12) |
| C2—C1—C3i | 118.31 (10) | C8—C7—H7 | 120.5 |
| C3—C2—C1 | 121.90 (11) | C6—C7—H7 | 120.5 |
| C3—C2—Cl1 | 120.77 (10) | N1—C8—C7 | 122.88 (13) |
| C1—C2—Cl1 | 117.33 (9) | N1—C8—H8 | 118.6 |
| O2—C3—C2 | 123.08 (12) | C7—C8—H8 | 118.6 |
| O2—C3—C1i | 117.14 (11) | N2—C9—C5 | 179.14 (15) |
| C2—C3—C1i | 119.78 (11) | N3—C10—C11 | 179.69 (18) |
| N1—C4—C5 | 122.13 (12) | C10—C11—H11A | 109.5 |
| N1—C4—H4 | 118.9 | C10—C11—H11B | 109.5 |
| C5—C4—H4 | 118.9 | H11A—C11—H11B | 109.5 |
| C6—C5—C4 | 119.46 (12) | C10—C11—H11C | 109.5 |
| C6—C5—C9 | 121.20 (12) | H11A—C11—H11C | 109.5 |
| C4—C5—C9 | 119.34 (12) | H11B—C11—H11C | 109.5 |
| O1—C1—C2—C3 | 179.96 (13) | C8—N1—C4—C5 | −0.6 (2) |
| C3i—C1—C2—C3 | −0.1 (2) | N1—C4—C5—C6 | 0.2 (2) |
| O1—C1—C2—Cl1 | 0.78 (18) | N1—C4—C5—C9 | −179.19 (13) |
| C3i—C1—C2—Cl1 | −179.23 (9) | C4—C5—C6—C7 | 0.4 (2) |
| C1—C2—C3—O2 | −179.86 (12) | C9—C5—C6—C7 | 179.82 (13) |
| Cl1—C2—C3—O2 | −0.72 (19) | C5—C6—C7—C8 | −0.6 (2) |
| C1—C2—C3—C1i | 0.1 (2) | C4—N1—C8—C7 | 0.4 (2) |
| Cl1—C2—C3—C1i | 179.21 (9) | C6—C7—C8—N1 | 0.3 (2) |
| H··· | ||||
| O2—H2···N1 | 0.92 (3) | 1.75 (3) | 2.6111 (17) | 154 (3) |
| O2—H2···O1i | 0.92 (3) | 2.25 (3) | 2.6824 (14) | 108 (2) |
| C4—H4···N2ii | 0.95 | 2.46 | 3.292 (2) | 146 |
| C6—H6···N3 | 0.95 | 2.57 | 3.385 (2) | 144 |
| C7—H7···O1iii | 0.95 | 2.48 | 3.4248 (18) | 172 |
| C11—H11A···N2 | 0.98 | 2.62 | 3.341 (2) | 130 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯N1 | 0.92 (3) | 1.75 (3) | 2.6111 (17) | 154 (3) |
| O2—H2⋯O1i | 0.92 (3) | 2.25 (3) | 2.6824 (14) | 108 (2) |
| C4—H4⋯N2ii | 0.95 | 2.46 | 3.292 (2) | 146 |
| C6—H6⋯N3 | 0.95 | 2.57 | 3.385 (2) | 144 |
| C7—H7⋯O1iii | 0.95 | 2.48 | 3.4248 (18) | 172 |
| C11—H11 | 0.98 | 2.62 | 3.341 (2) | 130 |
Symmetry codes: (i) ; (ii) ; (iii) .