Literature DB >> 21582266

2-Carboxy-pyridinium hydrogen chloranilate.

Kazuma Gotoh1, Hirokazu Nagoshi, Hiroyuki Ishida.   

Abstract

In the crystal structure of the title salt, C(6)H(6)NO(2) (+)·C(6)HCl(2)O(4) (-), the pyridine ring and the mean plane of the hydrogen chloranilate anion form a dihedral angle of 77.40 (8)°. The ionic components are held together by N-H⋯O and O-H⋯O hydrogen bonds, forming a supra-molecular ladder. C-H⋯O inter-actions are also present.

Entities:  

Year:  2009        PMID: 21582266      PMCID: PMC2968548          DOI: 10.1107/S1600536809006412

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of related carboxy­pyridinium hydrogen chloranilates, see: Gotoh et al. (2006 ▶); Tabuchi et al. (2005 ▶); Ishida (2009 ▶).

Experimental

Crystal data

C6H6NO2C6HCl2O4 M = 332.10 Monoclinic, a = 9.4166 (8) Å b = 19.6900 (16) Å c = 6.7089 (6) Å β = 99.043 (3)° V = 1228.45 (18) Å3 Z = 4 Mo Kα radiation μ = 0.56 mm−1 T = 103 K 0.30 × 0.30 × 0.23 mm

Data collection

Rigaku R-AXIS RAPID-II diffractometer Absorption correction: multi-scan (; Higashi, 1995 ▶) T min = 0.847, T max = 0.880 9710 measured reflections 3433 independent reflections 2228 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.144 S = 1.10 3433 reflections 202 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.47 e Å−3 Δρmin = −0.92 e Å−3 Data collection: PROCESS-AUTO (Rigaku/MSC, 2004 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: CrystalStructure and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809006412/tk2376sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809006412/tk2376Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6NO2+·C6HCl2O4F(000) = 672.00
Mr = 332.10Dx = 1.795 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71075 Å
Hall symbol: -P 2ybcCell parameters from 7392 reflections
a = 9.4166 (8) Åθ = 3.0–30.0°
b = 19.6900 (16) ŵ = 0.56 mm1
c = 6.7089 (6) ÅT = 103 K
β = 99.043 (3)°Platelet, dark purple
V = 1228.45 (18) Å30.30 × 0.30 × 0.23 mm
Z = 4
Rigaku R-AXIS RAPID-II diffractometer2228 reflections with I > 2σ(I)
Detector resolution: 10.00 pixels mm-1Rint = 0.047
ω scansθmax = 30.0°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −13→13
Tmin = 0.847, Tmax = 0.880k = −27→27
9710 measured reflectionsl = −8→9
3433 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0659P)2 + 0.8975P] where P = (Fo2 + 2Fc2)/3
3433 reflections(Δ/σ)max < 0.001
202 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.92 e Å3
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.17894 (6)0.28996 (3)0.27912 (9)0.02060 (16)
Cl20.46528 (6)0.29140 (3)0.10812 (9)0.02077 (16)
O10.00723 (19)0.40867 (8)0.2367 (3)0.0218 (4)
O20.01147 (19)0.17042 (9)0.2397 (3)0.0184 (3)
O30.27117 (18)0.17271 (8)0.1488 (3)0.0196 (4)
O40.27772 (19)0.41277 (8)0.1577 (3)0.0209 (4)
O50.12383 (18)0.45615 (9)0.6917 (3)0.0215 (4)
O60.3466 (2)0.47658 (10)0.8601 (3)0.0265 (4)
N10.1860 (2)0.52690 (11)0.3720 (3)0.0199 (4)
C10.0667 (2)0.35416 (11)0.2174 (3)0.0164 (4)
C2−0.0036 (2)0.28950 (11)0.2347 (3)0.0160 (4)
C30.0678 (2)0.23079 (11)0.2188 (3)0.0154 (4)
C40.2206 (2)0.22965 (11)0.1715 (3)0.0155 (4)
C50.2899 (2)0.29272 (11)0.1544 (4)0.0170 (4)
C60.2232 (2)0.35480 (12)0.1732 (3)0.0165 (4)
C70.2794 (3)0.52837 (12)0.5464 (4)0.0198 (5)
C80.3984 (3)0.56970 (13)0.5626 (4)0.0229 (5)
H80.46560.57080.68400.027*
C90.4194 (3)0.60996 (13)0.3987 (4)0.0262 (5)
H90.50100.63880.40770.031*
C100.3206 (3)0.60759 (13)0.2230 (4)0.0268 (5)
H100.33320.63520.11090.032*
C110.2035 (3)0.56488 (13)0.2118 (4)0.0239 (5)
H110.13570.56240.09130.029*
C120.2418 (3)0.48289 (12)0.7090 (4)0.0195 (5)
H10.109 (5)0.498 (2)0.363 (6)0.053 (11)*
H20.071 (4)0.1437 (17)0.227 (5)0.032 (9)*
H60.319 (4)0.4534 (18)0.964 (6)0.043 (10)*
U11U22U33U12U13U23
Cl10.0146 (3)0.0253 (3)0.0233 (3)0.0013 (2)0.0076 (2)−0.0006 (2)
Cl20.0151 (3)0.0258 (3)0.0230 (3)−0.0018 (2)0.0080 (2)−0.0011 (2)
O10.0207 (8)0.0196 (8)0.0256 (9)0.0020 (7)0.0051 (7)−0.0022 (7)
O20.0163 (8)0.0164 (7)0.0238 (9)0.0013 (7)0.0074 (7)−0.0008 (7)
O30.0176 (8)0.0201 (8)0.0220 (8)0.0016 (7)0.0063 (7)−0.0008 (7)
O40.0232 (9)0.0200 (8)0.0210 (9)−0.0027 (7)0.0083 (7)0.0019 (6)
O50.0177 (8)0.0212 (8)0.0274 (9)−0.0017 (7)0.0094 (7)0.0018 (7)
O60.0221 (9)0.0336 (10)0.0235 (9)−0.0063 (8)0.0024 (7)0.0050 (8)
N10.0145 (9)0.0229 (10)0.0229 (10)−0.0018 (8)0.0050 (8)0.0000 (8)
C10.0182 (10)0.0180 (10)0.0130 (10)0.0007 (9)0.0020 (8)0.0001 (8)
C20.0130 (10)0.0197 (10)0.0152 (10)0.0009 (8)0.0023 (8)−0.0019 (8)
C30.0154 (10)0.0183 (10)0.0132 (10)−0.0002 (8)0.0048 (8)0.0005 (8)
C40.0149 (10)0.0193 (10)0.0132 (10)0.0009 (8)0.0048 (8)0.0003 (8)
C50.0132 (10)0.0207 (10)0.0176 (10)−0.0013 (9)0.0041 (8)−0.0006 (9)
C60.0165 (10)0.0204 (10)0.0133 (10)−0.0014 (9)0.0039 (8)−0.0011 (8)
C70.0179 (11)0.0184 (11)0.0241 (12)0.0001 (9)0.0067 (9)−0.0006 (9)
C80.0188 (11)0.0236 (12)0.0272 (13)0.0000 (10)0.0066 (10)−0.0018 (10)
C90.0223 (12)0.0231 (12)0.0355 (14)−0.0031 (10)0.0118 (11)0.0023 (11)
C100.0292 (13)0.0248 (12)0.0291 (13)0.0006 (11)0.0129 (11)0.0049 (10)
C110.0229 (12)0.0270 (12)0.0221 (12)0.0049 (10)0.0051 (10)0.0028 (10)
C120.0210 (11)0.0193 (10)0.0197 (11)−0.0002 (9)0.0076 (9)−0.0021 (9)
Cl1—C21.723 (2)C1—C61.548 (3)
Cl2—C51.727 (2)C2—C31.350 (3)
O1—C11.227 (3)C3—C41.521 (3)
O2—C31.318 (3)C4—C51.416 (3)
O2—H20.79 (3)C5—C61.389 (3)
O3—C41.237 (3)C7—C81.375 (3)
O4—C61.263 (3)C7—C121.497 (3)
O5—C121.218 (3)C8—C91.394 (4)
O6—C121.305 (3)C8—H80.9500
O6—H60.90 (4)C9—C101.383 (4)
N1—C111.340 (3)C9—H90.9500
N1—C71.349 (3)C10—C111.379 (4)
N1—H10.92 (4)C10—H100.9500
C1—C21.448 (3)C11—H110.9500
C3—O2—H2107 (3)O4—C6—C1115.8 (2)
C12—O6—H6112 (2)C5—C6—C1117.90 (19)
C11—N1—C7122.5 (2)N1—C7—C8119.6 (2)
C11—N1—H1119 (2)N1—C7—C12115.0 (2)
C7—N1—H1118 (2)C8—C7—C12125.4 (2)
O1—C1—C2122.6 (2)C7—C8—C9119.3 (2)
O1—C1—C6118.5 (2)C7—C8—H8120.4
C2—C1—C6118.91 (19)C9—C8—H8120.4
C3—C2—C1120.4 (2)C10—C9—C8119.5 (2)
C3—C2—Cl1121.40 (18)C10—C9—H9120.2
C1—C2—Cl1118.15 (17)C8—C9—H9120.2
O2—C3—C2123.3 (2)C11—C10—C9119.5 (2)
O2—C3—C4114.75 (19)C11—C10—H10120.3
C2—C3—C4121.9 (2)C9—C10—H10120.3
O3—C4—C5126.4 (2)N1—C11—C10119.7 (2)
O3—C4—C3115.7 (2)N1—C11—H11120.2
C5—C4—C3117.85 (19)C10—C11—H11120.2
C6—C5—C4122.9 (2)O5—C12—O6126.9 (2)
C6—C5—Cl2119.23 (17)O5—C12—C7120.4 (2)
C4—C5—Cl2117.86 (17)O6—C12—C7112.7 (2)
O4—C6—C5126.3 (2)
O1—C1—C2—C3−177.9 (2)C4—C5—C6—C10.7 (3)
C6—C1—C2—C32.1 (3)Cl2—C5—C6—C1−179.21 (16)
O1—C1—C2—Cl11.3 (3)O1—C1—C6—O4−0.9 (3)
C6—C1—C2—Cl1−178.77 (16)C2—C1—C6—O4179.2 (2)
C1—C2—C3—O2177.7 (2)O1—C1—C6—C5179.2 (2)
Cl1—C2—C3—O2−1.4 (3)C2—C1—C6—C5−0.7 (3)
C1—C2—C3—C4−3.3 (3)C11—N1—C7—C8−0.6 (4)
Cl1—C2—C3—C4177.58 (16)C11—N1—C7—C12179.6 (2)
O2—C3—C4—O33.3 (3)N1—C7—C8—C90.7 (4)
C2—C3—C4—O3−175.8 (2)C12—C7—C8—C9−179.5 (2)
O2—C3—C4—C5−177.73 (19)C7—C8—C9—C10−0.1 (4)
C2—C3—C4—C53.2 (3)C8—C9—C10—C11−0.7 (4)
O3—C4—C5—C6177.0 (2)C7—N1—C11—C10−0.2 (4)
C3—C4—C5—C6−1.8 (3)C9—C10—C11—N10.8 (4)
O3—C4—C5—Cl2−3.0 (3)N1—C7—C12—O5−11.4 (3)
C3—C4—C5—Cl2178.11 (16)C8—C7—C12—O5168.8 (2)
C4—C5—C6—O4−179.2 (2)N1—C7—C12—O6168.4 (2)
Cl2—C5—C6—O40.8 (3)C8—C7—C12—O6−11.4 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.92 (4)2.11 (3)2.932 (2)147 (3)
N1—H1···O50.92 (4)2.33 (4)2.698 (2)103 (2)
N1—H1···O5i0.92 (4)2.34 (4)2.900 (2)119 (3)
O2—H2···O30.79 (3)2.11 (3)2.612 (2)122 (3)
O2—H2···O5ii0.79 (3)2.05 (3)2.746 (2)148 (3)
O6—H6···O4iii0.90 (3)1.63 (3)2.528 (2)177.1 (15)
C8—H8···O4iv0.952.503.338 (3)147
C9—H9···O3v0.952.333.227 (3)156
C11—H11···O1vi0.952.463.374 (3)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O10.92 (4)2.11 (3)2.932 (2)147 (3)
O2—H2⋯O5i0.79 (3)2.05 (3)2.746 (2)148 (3)
O6—H6⋯O4ii0.90 (3)1.63 (3)2.528 (2)177.1 (15)
C8—H8⋯O4iii0.952.503.338 (3)147
C9—H9⋯O3iv0.952.333.227 (3)156
C11—H11⋯O1v0.952.463.374 (3)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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  3 in total

1.  3-Hydroxy-pyridinium hydrogen chloranilate monohydrate.

Authors:  Kazuma Gotoh; Hiroyuki Ishida
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-11

2.  Crystal structures of two 1:2 dihydrate compounds of chloranilic acid with 2-carb-oxy-pyridine and 2-carb-oxy-quinoline.

Authors:  Kazuma Gotoh; Hiroyuki Ishida
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-11-07

3.  Crystal structures of three hydrogen-bonded 1:2 compounds of chloranilic acid with 2-pyridone, 3-hy-droxy-pyridine and 4-hyroxypyridine.

Authors:  Kazuma Gotoh; Hiroyuki Ishida
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-09-29
  3 in total

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