Literature DB >> 21584019

4-Guanidinobenzene-sulfonic acid.

Wei-Feng Wang, Chang-Mei Wei, Hong-Jun Zhu.   

Abstract

IN THE ZWITTERIONIC TITLE COMPOUND (SYSTEMATIC NAME: 4-{[amino(inimio)methyl]amino}benzenesulfonate), C(7)H(9)N(3)O(3)S, the dihedral angle between the plane of the guanidine grouping and the benzene ring system is 44.87 (7)°. The crystal packing is stabilized by inter-molecular N-H⋯O hydrogen bonds involving all the potential donors.

Entities:  

Year:  2009        PMID: 21584019      PMCID: PMC2977676          DOI: 10.1107/S1600536809012355

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Hofbens & Rath (1981 ▶). For the effect of guanidine salts on protein structure and their inhibitory effect on various physiological activities, see: Miyake et al. (2008 ▶).

Experimental

Crystal data

C7H9N3O3S M = 215.24 Orthorhombic, a = 7.9967 (9) Å b = 11.9200 (13) Å c = 19.721 (2) Å V = 1879.8 (4) Å3 Z = 8 Mo Kα radiation μ = 0.33 mm−1 T = 296 K 0.35 × 0.3 × 0.2 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.902, T max = 0.944 10292 measured reflections 2156 independent reflections 1544 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.110 S = 1.02 2156 reflections 163 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809012355/bq2128sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012355/bq2128Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H9N3O3SDx = 1.521 Mg m3
Mr = 215.24Melting point > 300 K
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2125 reflections
a = 7.9967 (9) Åθ = 3.2–25.9°
b = 11.9200 (13) ŵ = 0.33 mm1
c = 19.721 (2) ÅT = 296 K
V = 1879.8 (4) Å3Block, colourless
Z = 80.35 × 0.3 × 0.2 mm
F(000) = 896
Bruker SMART APEXII CCD diffractometer2156 independent reflections
Radiation source: fine-focus sealed tube1544 reflections with I > 2σ(I)
graphiteRint = 0.040
ω scansθmax = 27.5°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −10→10
Tmin = 0.902, Tmax = 0.944k = −15→13
10292 measured reflectionsl = −24→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.054P)2 + 0.6089P] where P = (Fo2 + 2Fc2)/3
2156 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0397 (3)0.48689 (18)0.26624 (10)0.0329 (5)
C20.0470 (3)0.53779 (18)0.32882 (11)0.0338 (5)
C30.1174 (2)0.64333 (17)0.33506 (10)0.0316 (5)
C40.1778 (3)0.69826 (18)0.27833 (11)0.0356 (5)
C50.1684 (3)0.64822 (17)0.21529 (11)0.0346 (5)
C60.1005 (2)0.54177 (16)0.20961 (10)0.0291 (4)
C70.1541 (3)0.65879 (18)0.45879 (10)0.0349 (5)
H1−0.006 (3)0.4173 (19)0.2604 (12)0.044 (6)*
H2−0.004 (3)0.504 (2)0.3685 (11)0.043 (6)*
H30.230 (3)0.765 (2)0.2812 (11)0.045 (7)*
H40.210 (3)0.6900 (18)0.1779 (13)0.043 (6)*
H50.101 (3)0.767 (2)0.3958 (12)0.049 (7)*
H60.253 (3)0.523 (2)0.4302 (14)0.055 (8)*
H70.236 (3)0.529 (2)0.5062 (14)0.058 (8)*
H80.178 (3)0.700 (2)0.5536 (15)0.072 (9)*
H90.098 (3)0.787 (2)0.5079 (13)0.052 (8)*
N10.1200 (3)0.70124 (16)0.39801 (10)0.0412 (5)
N20.2066 (3)0.55499 (17)0.46566 (11)0.0439 (5)
N30.1313 (3)0.7218 (2)0.51347 (11)0.0532 (6)
O10.21174 (19)0.38280 (13)0.13149 (8)0.0451 (4)
O2−0.07907 (17)0.43211 (12)0.12279 (7)0.0376 (4)
O30.1335 (2)0.55807 (12)0.07941 (8)0.0494 (5)
S10.09167 (7)0.47441 (4)0.12971 (2)0.03204 (18)
U11U22U33U12U13U23
C10.0413 (11)0.0274 (11)0.0300 (11)−0.0057 (9)−0.0014 (9)0.0013 (8)
C20.0401 (10)0.0355 (12)0.0258 (11)−0.0029 (9)0.0007 (9)0.0027 (9)
C30.0386 (10)0.0276 (10)0.0287 (11)0.0059 (9)−0.0034 (9)−0.0024 (8)
C40.0467 (12)0.0233 (10)0.0368 (12)−0.0024 (9)−0.0033 (10)−0.0017 (9)
C50.0451 (11)0.0260 (11)0.0327 (12)−0.0013 (10)0.0034 (10)0.0034 (9)
C60.0348 (10)0.0256 (10)0.0268 (10)0.0012 (8)−0.0011 (8)−0.0012 (8)
C70.0442 (11)0.0343 (11)0.0262 (11)0.0069 (10)−0.0028 (9)−0.0045 (9)
N10.0665 (13)0.0261 (10)0.0311 (10)0.0095 (9)−0.0096 (9)−0.0053 (8)
N20.0691 (13)0.0396 (11)0.0231 (10)0.0176 (10)−0.0035 (10)−0.0027 (8)
N30.0846 (16)0.0421 (13)0.0329 (12)0.0172 (12)−0.0051 (11)−0.0121 (10)
O10.0532 (9)0.0373 (9)0.0448 (10)0.0100 (7)0.0017 (7)−0.0085 (7)
O20.0465 (8)0.0309 (8)0.0355 (9)−0.0020 (7)−0.0086 (7)−0.0012 (6)
O30.0869 (12)0.0336 (9)0.0278 (8)−0.0105 (9)0.0088 (8)0.0034 (6)
S10.0474 (3)0.0247 (3)0.0240 (3)−0.0011 (2)0.0010 (2)−0.00080 (19)
C1—C21.376 (3)C7—N21.313 (3)
C1—C61.383 (3)C7—N31.327 (3)
C1—H10.91 (2)C7—N11.329 (3)
C2—C31.384 (3)N1—H50.80 (3)
C2—H20.97 (2)N2—H60.88 (3)
C3—C41.383 (3)N2—H70.89 (3)
C3—N11.421 (3)N3—H80.91 (3)
C4—C51.381 (3)N3—H90.83 (3)
C4—H30.90 (2)O1—S11.4546 (15)
C5—C61.385 (3)O2—S11.4619 (15)
C5—H40.95 (2)O3—S11.4457 (15)
C6—S11.770 (2)
C2—C1—C6120.1 (2)N2—C7—N3119.6 (2)
C2—C1—H1122.0 (15)N2—C7—N1121.1 (2)
C6—C1—H1117.9 (15)N3—C7—N1119.3 (2)
C1—C2—C3119.9 (2)C7—N1—C3127.30 (19)
C1—C2—H2121.6 (14)C7—N1—H5117.4 (18)
C3—C2—H2118.4 (14)C3—N1—H5115.2 (18)
C4—C3—C2120.0 (2)C7—N2—H6117.3 (17)
C4—C3—N1118.13 (19)C7—N2—H7120.1 (17)
C2—C3—N1121.70 (19)H6—N2—H7117 (2)
C5—C4—C3120.3 (2)C7—N3—H8119.0 (18)
C5—C4—H3117.6 (14)C7—N3—H9117.9 (19)
C3—C4—H3122.0 (14)H8—N3—H9121 (3)
C4—C5—C6119.3 (2)O3—S1—O1112.45 (10)
C4—C5—H4116.9 (14)O3—S1—O2112.95 (10)
C6—C5—H4123.7 (14)O1—S1—O2111.09 (9)
C1—C6—C5120.40 (19)O3—S1—C6106.78 (9)
C1—C6—S1119.37 (15)O1—S1—C6107.02 (9)
C5—C6—S1120.22 (15)O2—S1—C6106.07 (9)
C6—C1—C2—C3−0.9 (3)N2—C7—N1—C36.7 (4)
C1—C2—C3—C41.1 (3)N3—C7—N1—C3−171.9 (2)
C1—C2—C3—N1176.8 (2)C4—C3—N1—C7−141.9 (2)
C2—C3—C4—C5−0.1 (3)C2—C3—N1—C742.3 (3)
N1—C3—C4—C5−176.0 (2)C1—C6—S1—O3169.46 (17)
C3—C4—C5—C6−1.1 (3)C5—C6—S1—O3−10.8 (2)
C2—C1—C6—C5−0.2 (3)C1—C6—S1—O1−69.91 (18)
C2—C1—C6—S1179.46 (16)C5—C6—S1—O1109.79 (18)
C4—C5—C6—C11.2 (3)C1—C6—S1—O248.76 (18)
C4—C5—C6—S1−178.46 (16)C5—C6—S1—O2−131.54 (17)
D—H···AD—HH···AD···AD—H···A
N1—H5···O2i0.80 (3)2.00 (3)2.802 (2)171 (2)
N2—H6···O2ii0.88 (3)2.02 (3)2.851 (2)158 (2)
N2—H7···O3iii0.89 (3)2.07 (3)2.913 (3)160 (2)
N3—H8···O1iii0.91 (3)2.03 (3)2.924 (3)167 (3)
N3—H9···O3iv0.83 (3)2.34 (3)2.928 (3)129 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H5⋯O2i0.80 (3)2.00 (3)2.802 (2)171 (2)
N2—H6⋯O2ii0.88 (3)2.02 (3)2.851 (2)158 (2)
N2—H7⋯O3iii0.89 (3)2.07 (3)2.913 (3)160 (2)
N3—H8⋯O1iii0.91 (3)2.03 (3)2.924 (3)167 (3)
N3—H9⋯O3iv0.83 (3)2.34 (3)2.928 (3)129 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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