Literature DB >> 21578379

2,4-Di-tert-butyl-6-[(2,5-difluorophenyl)iminomethyl]phenol.

Omer Celik, Veli T Kasumov, Ertan Sahin.   

Abstract

In the title Schiff base, C(21)H(25)F(2)NO, the dihedral angle between the aromatic rings is 27.90(5)° and an intramolecular O-H⋯N hydrogen bond occurs. In the crystal, the molecules are linked by C-H⋯O, C-H⋯N and C-H⋯F interactions.

Entities:  

Year:  2009        PMID: 21578379      PMCID: PMC2970961          DOI: 10.1107/S1600536809041099

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on the photochromic behavior of salicyli­dene­anilines, see: Brown (1971 ▶); Chemla & Zyss (1987 ▶); MacDonald & Whitesides (1994 ▶); Cohen et al. (1966 ▶). For related compounds, see: Ancın et al. (2007 ▶); Kasumov, Köksal & Köseoĝlu (2004 ▶); Kasumov, Medjidov, Ya­ylı & Zeren (2004 ▶); Çelik et al. (2007 ▶, 2009 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶); Etter (1991 ▶).

Experimental

Crystal data

C21H25F2NO M = 345.42 Monoclinic, a = 6.423 (5) Å b = 17.386 (5) Å c = 17.337 (5) Å β = 90.319 (5)° V = 1936.0 (17) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.20 × 0.20 × 0.20 mm

Data collection

Rigaku Rxdiffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.983, T max = 0.983 50854 measured reflections 5662 independent reflections 2715 reflections with I > 2σ(I) R int = 0.099

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.144 S = 0.96 5662 reflections 238 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.11 e Å−3 Δρmin = −0.13 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and local programs. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809041099/jh2098sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809041099/jh2098Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H25F2NOF(000) = 736
Mr = 345.42Dx = 1.185 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 6.423 (5) ÅCell parameters from 5929 reflections
b = 17.386 (5) Åθ = 2.6–30.5°
c = 17.337 (5) ŵ = 0.09 mm1
β = 90.319 (5)°T = 293 K
V = 1936.0 (17) Å3Needle, pale yellow
Z = 40.20 × 0.20 × 0.20 mm
Rigaku Rx diffractometer5662 independent reflections
Radiation source: fine-focus sealed tube2715 reflections with I > 2σ(I)
graphiteRint = 0.099
Detector resolution: 10.0000 pixels mm-1θmax = 30.5°, θmin = 2.6°
dtprofit.ref scansh = −9→7
Absorption correction: multi-scan (Blessing, 1995)k = −24→24
Tmin = 0.983, Tmax = 0.983l = −24→24
50854 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: mixed
wR(F2) = 0.144H atoms treated by a mixture of independent and constrained refinement
S = 0.96w = 1/[σ2(Fo2) + (0.0514P)2] where P = (Fo2 + 2Fc2)/3
5662 reflections(Δ/σ)max < 0.001
238 parametersΔρmax = 0.11 e Å3
0 restraintsΔρmin = −0.13 e Å3
none constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F11.34032 (17)−0.06161 (7)0.45693 (7)0.0928 (4)
F20.7822 (2)−0.18169 (7)0.25642 (7)0.1106 (5)
O0.43585 (19)−0.00558 (7)0.19801 (7)0.0716 (3)
N0.7118 (2)−0.03731 (8)0.30481 (8)0.0599 (3)
C10.8873 (2)−0.07788 (9)0.33323 (9)0.0579 (4)
C21.0326 (3)−0.04776 (11)0.38404 (10)0.0632 (4)
C31.2008 (3)−0.09201 (11)0.40566 (10)0.0670 (4)
C41.2353 (3)−0.16381 (13)0.37793 (11)0.0817 (6)
C51.0919 (3)−0.19439 (12)0.32701 (12)0.0887 (6)
C60.9227 (3)−0.15091 (11)0.30581 (10)0.0727 (5)
C70.6290 (3)0.01624 (9)0.34520 (10)0.0571 (4)
C80.4535 (2)0.06101 (9)0.31824 (8)0.0533 (4)
C90.3601 (2)0.04900 (8)0.24564 (9)0.0542 (4)
C100.1864 (2)0.09270 (8)0.22268 (8)0.0531 (4)
C110.1149 (3)0.14730 (9)0.27431 (9)0.0551 (4)
C120.2021 (2)0.16151 (8)0.34774 (9)0.0517 (4)
C130.3714 (2)0.11717 (8)0.36766 (9)0.0543 (4)
C140.0847 (3)0.08127 (9)0.14289 (9)0.0608 (4)
C150.2440 (3)0.10244 (12)0.07964 (10)0.0878 (6)
C160.0150 (3)−0.00280 (10)0.13124 (10)0.0745 (5)
C17−0.1094 (3)0.13131 (11)0.13211 (11)0.0852 (6)
C180.1136 (3)0.22420 (9)0.40007 (9)0.0590 (4)
C190.2129 (3)0.22172 (12)0.48075 (10)0.0835 (6)
C20−0.1214 (3)0.21370 (11)0.40956 (11)0.0767 (5)
C210.1544 (3)0.30292 (10)0.36414 (12)0.0909 (6)
H00.5354−0.02690.21870.107*
H21.018 (3)0.0018 (10)0.4049 (10)0.072 (5)*
H41.3524−0.19160.39290.098*
H51.1096−0.24370.30730.106*
H70.681 (2)0.0293 (9)0.4007 (10)0.071 (5)*
H110.001 (2)0.1785 (8)0.2587 (8)0.054 (4)*
H130.43370.12470.41560.065*
H15A0.36590.07090.08530.132*
H15B0.28200.15560.08460.132*
H15C0.18300.09390.02970.132*
H16A0.1327−0.03630.13740.112*
H16B−0.0422−0.00880.08030.112*
H16C−0.0888−0.01560.16870.112*
H17A−0.16800.12230.08190.128*
H17B−0.07190.18450.13690.128*
H17C−0.21000.11840.17080.128*
H19A0.15440.26170.51210.125*
H19B0.36040.22920.47660.125*
H19C0.18580.17270.50410.125*
H20A−0.17490.25370.44210.115*
H20B−0.14870.16450.43260.115*
H20C−0.18810.21630.35990.115*
H21A0.09820.34230.39680.136*
H21B0.08900.30550.31430.136*
H21C0.30170.31050.35880.136*
U11U22U33U12U13U23
F10.0730 (7)0.1143 (9)0.0908 (8)−0.0059 (6)−0.0254 (6)0.0194 (6)
F20.1241 (10)0.0941 (9)0.1131 (10)0.0261 (7)−0.0420 (8)−0.0405 (7)
O0.0734 (8)0.0773 (8)0.0639 (7)0.0170 (6)−0.0125 (6)−0.0166 (6)
N0.0572 (8)0.0612 (8)0.0613 (8)0.0052 (6)−0.0076 (6)−0.0001 (6)
C10.0557 (9)0.0593 (10)0.0587 (9)0.0053 (8)−0.0012 (7)0.0062 (7)
C20.0598 (10)0.0635 (11)0.0662 (11)−0.0011 (8)−0.0034 (8)0.0075 (8)
C30.0579 (10)0.0824 (12)0.0608 (10)−0.0001 (9)−0.0042 (8)0.0134 (9)
C40.0724 (12)0.0961 (15)0.0766 (13)0.0274 (11)0.0037 (10)0.0123 (11)
C50.1007 (16)0.0829 (13)0.0825 (13)0.0350 (12)−0.0014 (12)−0.0069 (10)
C60.0785 (12)0.0752 (12)0.0644 (11)0.0108 (10)−0.0086 (9)−0.0091 (9)
C70.0557 (9)0.0584 (10)0.0572 (10)−0.0004 (8)−0.0077 (8)0.0019 (7)
C80.0518 (9)0.0542 (9)0.0538 (9)−0.0010 (7)−0.0049 (7)0.0000 (7)
C90.0585 (9)0.0503 (9)0.0536 (9)−0.0021 (7)−0.0026 (7)−0.0037 (7)
C100.0573 (9)0.0521 (8)0.0498 (8)−0.0045 (7)−0.0064 (7)0.0026 (7)
C110.0576 (10)0.0494 (9)0.0582 (9)0.0010 (7)−0.0075 (7)0.0040 (7)
C120.0536 (9)0.0468 (8)0.0546 (8)−0.0063 (7)−0.0038 (7)−0.0004 (6)
C130.0562 (9)0.0540 (9)0.0527 (8)−0.0049 (7)−0.0091 (7)−0.0027 (7)
C140.0723 (11)0.0595 (10)0.0504 (9)−0.0034 (8)−0.0122 (8)0.0013 (7)
C150.1058 (16)0.0983 (15)0.0594 (11)−0.0252 (12)−0.0046 (11)0.0053 (10)
C160.0868 (13)0.0699 (11)0.0667 (11)−0.0099 (10)−0.0171 (9)−0.0068 (8)
C170.0960 (15)0.0814 (13)0.0779 (13)0.0107 (11)−0.0372 (11)0.0014 (10)
C180.0635 (10)0.0500 (9)0.0636 (10)−0.0017 (7)−0.0001 (8)−0.0090 (7)
C190.0862 (13)0.0914 (14)0.0727 (12)0.0044 (11)−0.0081 (10)−0.0281 (10)
C200.0649 (11)0.0869 (13)0.0784 (12)0.0017 (9)0.0046 (9)−0.0107 (10)
C210.1132 (17)0.0543 (11)0.1054 (16)−0.0062 (11)0.0154 (13)−0.0068 (10)
F1—C31.365 (2)C2—H20.940 (17)
F2—C61.351 (2)C16—H16A0.9600
O—C91.3503 (18)C16—H16B0.9600
N—C71.282 (2)C16—H16C0.9600
N—C11.416 (2)C19—H19A0.9600
C1—C21.383 (2)C19—H19B0.9600
C1—C61.375 (2)C19—H19C0.9600
C3—C41.356 (3)C17—H17A0.9600
C3—C21.376 (2)C17—H17B0.9600
C4—C51.379 (3)C17—H17C0.9600
C6—C51.372 (3)C20—H20A0.9600
C8—C131.404 (2)C20—H20B0.9600
C8—C91.407 (2)C20—H20C0.9600
C8—C71.445 (2)C4—H40.9300
C10—C111.385 (2)C15—H15A0.9600
C10—C91.405 (2)C15—H15B0.9600
C10—C141.540 (2)C15—H15C0.9600
C11—C121.410 (2)C5—H50.9300
C12—C131.375 (2)C21—H21A0.9600
C12—C181.530 (2)C21—H21B0.9600
C14—C171.531 (2)C21—H21C0.9600
C14—C161.542 (2)C11—H110.948 (14)
C14—C151.548 (3)C13—H130.9300
C18—C211.527 (2)C7—H71.042 (17)
C18—C201.530 (3)O—H00.8200
C18—C191.535 (2)
C7—N—C1120.24 (14)C14—C16—H16C109.5
C11—C10—C9116.96 (14)H16A—C16—H16C109.5
C11—C10—C14121.90 (14)H16B—C16—H16C109.5
C9—C10—C14121.13 (14)C18—C19—H19A109.5
C10—C11—C12124.88 (15)C18—C19—H19B109.5
C13—C8—C9119.32 (14)H19A—C19—H19B109.5
C13—C8—C7118.16 (14)C18—C19—H19C109.5
C9—C8—C7122.50 (14)H19A—C19—H19C109.5
C13—C12—C11116.00 (14)H19B—C19—H19C109.5
C13—C12—C18123.12 (14)C14—C17—H17A109.5
C11—C12—C18120.87 (14)C14—C17—H17B109.5
C12—C13—C8122.39 (14)H17A—C17—H17B109.5
C6—C1—C2117.22 (16)C14—C17—H17C109.5
C6—C1—N118.20 (15)H17A—C17—H17C109.5
C2—C1—N124.49 (16)H17B—C17—H17C109.5
O—C9—C10119.66 (14)C18—C20—H20A109.5
O—C9—C8119.88 (14)C18—C20—H20B109.5
C10—C9—C8120.45 (14)H20A—C20—H20B109.5
C21—C18—C12109.36 (14)C18—C20—H20C109.5
C21—C18—C20108.81 (15)H20A—C20—H20C109.5
C12—C18—C20110.42 (13)H20B—C20—H20C109.5
C21—C18—C19109.01 (15)C3—C4—H4120.9
C12—C18—C19111.50 (14)C5—C4—H4120.9
C20—C18—C19107.68 (14)C14—C15—H15A109.5
N—C7—C8122.66 (15)C14—C15—H15B109.5
C17—C14—C10112.19 (14)H15A—C15—H15B109.5
C17—C14—C16106.69 (15)C14—C15—H15C109.5
C10—C14—C16111.20 (13)H15A—C15—H15C109.5
C17—C14—C15108.64 (15)H15B—C15—H15C109.5
C10—C14—C15109.07 (14)C6—C5—H5120.5
C16—C14—C15108.97 (15)C4—C5—H5120.5
C4—C3—F1118.63 (17)C18—C21—H21A109.5
C4—C3—C2123.19 (18)C18—C21—H21B109.5
F1—C3—C2118.17 (18)H21A—C21—H21B109.5
C3—C2—C1119.19 (18)C18—C21—H21C109.5
F2—C6—C5118.48 (17)H21A—C21—H21C109.5
F2—C6—C1118.27 (16)H21B—C21—H21C109.5
C5—C6—C1123.24 (18)C10—C11—H11117.7 (9)
C3—C4—C5118.17 (18)C12—C11—H11117.4 (9)
C6—C5—C4118.96 (19)C12—C13—H13118.8
C3—C2—H2119.2 (11)C8—C13—H13118.8
C1—C2—H2121.6 (11)N—C7—H7122.0 (9)
C14—C16—H16A109.5C8—C7—H7115.3 (9)
C14—C16—H16B109.5C9—O—H0109.5
H16A—C16—H16B109.5
C9—C10—C11—C12−0.5 (2)C11—C12—C18—C19172.11 (15)
C14—C10—C11—C12−179.12 (14)C1—N—C7—C8178.23 (14)
C10—C11—C12—C130.3 (2)C13—C8—C7—N178.59 (15)
C10—C11—C12—C18178.97 (15)C9—C8—C7—N0.1 (2)
C11—C12—C13—C80.0 (2)C11—C10—C14—C17−4.9 (2)
C18—C12—C13—C8−178.57 (14)C9—C10—C14—C17176.53 (15)
C9—C8—C13—C12−0.2 (2)C11—C10—C14—C16−124.32 (17)
C7—C8—C13—C12−178.68 (14)C9—C10—C14—C1657.1 (2)
C7—N—C1—C6155.18 (17)C11—C10—C14—C15115.49 (18)
C7—N—C1—C2−28.3 (2)C9—C10—C14—C15−63.06 (19)
C11—C10—C9—O179.42 (14)C4—C3—C2—C11.8 (3)
C14—C10—C9—O−2.0 (2)F1—C3—C2—C1−178.84 (14)
C11—C10—C9—C80.3 (2)C6—C1—C2—C3−1.3 (2)
C14—C10—C9—C8178.94 (14)N—C1—C2—C3−177.87 (15)
C13—C8—C9—O−179.09 (14)C2—C1—C6—F2179.66 (16)
C7—C8—C9—O−0.7 (2)N—C1—C6—F2−3.5 (3)
C13—C8—C9—C100.0 (2)C2—C1—C6—C50.6 (3)
C7—C8—C9—C10178.43 (14)N—C1—C6—C5177.43 (17)
C13—C12—C18—C21111.27 (18)F1—C3—C4—C5179.11 (17)
C11—C12—C18—C21−67.3 (2)C2—C3—C4—C5−1.6 (3)
C13—C12—C18—C20−129.03 (17)F2—C6—C5—C4−179.41 (17)
C11—C12—C18—C2052.4 (2)C1—C6—C5—C4−0.4 (3)
C13—C12—C18—C19−9.4 (2)C3—C4—C5—C60.8 (3)
D—H···AD—HH···AD···AD—H···A
O—H0···N0.821.882.615 (2)149
C16—H16A···O0.962.272.935 (3)126
C15—H15A···O0.962.403.038 (2)123
C7—H7···F1i1.0422.8753.010 (2)87
C16—H16C···Ni0.962.723.643 (3)162
C21—H21B···F2ii0.962.683.498 (3)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O—H0⋯N0.821.882.615 (2)149
C16—H16A⋯O0.962.272.935 (3)126
C15—H15A⋯O0.962.403.038 (2)123
C16—H16C⋯Ni0.962.723.643 (3)162
C21—H21B⋯F2ii0.962.683.498 (3)143

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  Spectroscopic and electrochemical characterization of di-tert-butylated sterically hindered Schiff bases and their phenoxyl radicals.

Authors:  V T Kasumov; A A Medjidov; N Yayli; Y Zeren
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2004-11       Impact factor: 4.098

  3 in total
  4 in total

1.  1-(2,3,4,5,6-Penta-methyl-benz-yl)-2-(pyridin-2-yl)-1H-benzimidazole.

Authors:  Fırat Anĝay; Omer Celik; Orhan Barlık; Mahmut Ulusoy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-16

2.  Crystal structure and DFT computational studies of (E)-2,4-di-tert-butyl-6-{[3-(tri-fluoro-meth-yl)benz-yl]imino-meth-yl}phenol.

Authors:  Nihal Kan Kaynar; Hasan Tanak; Mustafa Macit; Namık Özdemir
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2020-04-24

3.  cis-Bis{(E)-2-[(2-fluoro-phen-yl)imino-meth-yl]phenolato-κ(2) N,O}bis-(pyridine-κN)nickel(II).

Authors:  Marcela C G Souza; Leonardo da C Ferreira; Nadia M Comerlato; Glaucio B Ferreira; Lorenzo do Canto Visentin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-10

4.  1-(4-Fluoro-benz-yl)-2-(pyridin-2-yl)-1H-benzimidazole.

Authors:  Omer Celik; Fırat Anĝay; Mustafa Gündoĝan; Mahmut Ulusoy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-26
  4 in total

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