Literature DB >> 24860369

1-(2,3,4,5,6-Penta-methyl-benz-yl)-2-(pyridin-2-yl)-1H-benzimidazole.

Fırat Anĝay1, Omer Celik2, Orhan Barlık3, Mahmut Ulusoy3.   

Abstract

In the title compound, C24H25N3, the benzimidazole ring system is essentially planar, with an r.m.s. deviation of 0.017 Å, and forms dihedral angles of 7.81 (5) and 87.61 (4)° with the pyridine and benzene rings, respectively. An intra-molecular C-H⋯N hydrogen bond is observed. In the crystal, mol-ecules are stacked along the a axis by weak C-H⋯π inter-actions.

Entities:  

Year:  2014        PMID: 24860369      PMCID: PMC4011285          DOI: 10.1107/S1600536814007934

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of 2-(2-pyrid­yl)benzimidazole in coordination chemistry, see: Sahin et al. (2010 ▶); Harkins et al. (1956 ▶); Chiswell et al. (1964 ▶); De Castro et al. (1991 ▶); Maekawa et al. (1994 ▶); Khalil et al. (2001 ▶); Boca et al. (1997 ▶). For the use of N—N-type ligand systems involving 2,2′-bi­pyridine, see: Lippert (1999 ▶); Wong & Giandomenico (1999 ▶), Kelland & Farrell (2000 ▶). For related structures, see: Çelik et al. (2007 ▶, 2009 ▶, 2014 ▶).

Experimental

Crystal data

C24H25N3 M = 355.47 Monoclinic, a = 5.3470 (3) Å b = 21.0622 (12) Å c = 17.0379 (9) Å β = 97.699 (3)° V = 1901.50 (18) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 296 K 0.25 × 0.20 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.982, T max = 0.989 25354 measured reflections 3741 independent reflections 3056 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.150 S = 1.04 3741 reflections 254 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814007934/rz5115sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814007934/rz5115Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814007934/rz5115Isup3.cml CCDC reference: 996309 Additional supporting information: crystallographic information; 3D view; checkCIF report
C24H25N3F(000) = 760
Mr = 355.47Dx = 1.242 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 5.3470 (3) ÅCell parameters from 1276 reflections
b = 21.0622 (12) Åθ = 2.3–31.5°
c = 17.0379 (9) ŵ = 0.07 mm1
β = 97.699 (3)°T = 296 K
V = 1901.50 (18) Å3Prism, yellow
Z = 40.25 × 0.20 × 0.15 mm
Bruker APEXII CCD diffractometer3056 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.026
φ and ω scansθmax = 26.0°, θmin = 2.3°
Absorption correction: multi-scan (Blessing, 1995)h = −6→6
Tmin = 0.982, Tmax = 0.989k = −25→25
25354 measured reflectionsl = −21→20
3741 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0775P)2 + 0.5927P] where P = (Fo2 + 2Fc2)/3
3741 reflections(Δ/σ)max < 0.001
254 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C11.0873 (5)0.86580 (11)0.44231 (14)0.0724 (6)
H11.21740.84280.42460.087*
C21.0060 (5)0.91952 (12)0.40152 (14)0.0737 (6)
H21.07900.93270.35770.088*
C30.8151 (5)0.95308 (12)0.42706 (16)0.0842 (7)
H30.75480.99000.40110.101*
C40.7133 (5)0.93151 (10)0.49165 (15)0.0771 (7)
H40.58090.95350.50940.092*
C50.8068 (3)0.87716 (7)0.53054 (11)0.0465 (4)
C60.6926 (3)0.85653 (7)0.60059 (10)0.0452 (4)
C70.4595 (4)0.86110 (8)0.69313 (11)0.0507 (4)
C80.2891 (4)0.87790 (10)0.74483 (13)0.0658 (6)
H80.20140.91610.73870.079*
C90.2541 (4)0.83708 (10)0.80460 (13)0.0667 (6)
H90.14140.84770.83960.080*
C100.3850 (4)0.77962 (10)0.81392 (12)0.0598 (5)
H100.35970.75310.85580.072*
C110.5507 (4)0.76104 (9)0.76284 (10)0.0505 (4)
H110.63600.72250.76900.061*
C120.5841 (3)0.80251 (8)0.70185 (10)0.0432 (4)
C130.8894 (3)0.74472 (7)0.62583 (10)0.0422 (4)
H13A1.02640.74100.66910.051*
H13B0.96320.75250.57770.051*
C140.7459 (3)0.68215 (7)0.61734 (9)0.0370 (4)
C150.5434 (3)0.67529 (7)0.55618 (9)0.0391 (4)
C160.4047 (3)0.61901 (8)0.54888 (10)0.0452 (4)
C170.4753 (3)0.56796 (8)0.59946 (11)0.0471 (4)
C180.6838 (3)0.57318 (7)0.65801 (10)0.0448 (4)
C190.8190 (3)0.63066 (7)0.66771 (10)0.0412 (4)
C200.4783 (4)0.72858 (9)0.49769 (10)0.0511 (4)
H20A0.406 (3)0.7111 (2)0.4472 (7)0.077*
H20B0.630 (2)0.7521 (5)0.4912 (6)0.077*
H20C0.357 (2)0.7567 (5)0.5172 (5)0.077*
C210.1762 (4)0.61342 (11)0.48609 (14)0.0703 (6)
H21A0.2254 (10)0.5965 (8)0.4399 (8)0.105*
H21B0.106 (2)0.6535 (6)0.4754 (8)0.105*
H21C0.057 (2)0.5868 (8)0.5043 (5)0.105*
C220.3235 (5)0.50692 (10)0.59025 (15)0.0710 (6)
H22A0.314 (3)0.4923 (5)0.5373 (9)0.107*
H22B0.158 (3)0.5146 (2)0.6025 (10)0.107*
H22C0.403 (2)0.4757 (5)0.6251 (9)0.107*
C230.7616 (5)0.51661 (9)0.71064 (13)0.0655 (6)
H23A0.626 (2)0.5047 (5)0.7383 (8)0.098*
H23B0.904 (3)0.5276 (3)0.7476 (8)0.098*
H23C0.803 (3)0.4820 (6)0.6790 (5)0.098*
C241.0435 (4)0.63574 (10)0.73176 (13)0.0630 (5)
H24A1.168 (2)0.6592 (7)0.7134 (4)0.094*
H24B1.104 (2)0.5960 (6)0.7452 (7)0.094*
H24C0.9950 (10)0.6551 (7)0.7754 (7)0.094*
N10.9926 (3)0.84413 (8)0.50574 (10)0.0616 (4)
N20.5315 (3)0.89400 (7)0.63031 (10)0.0561 (4)
N30.7309 (3)0.79969 (6)0.64092 (8)0.0406 (3)
U11U22U33U12U13U23
C10.0797 (15)0.0651 (13)0.0780 (14)0.0052 (11)0.0312 (12)0.0205 (11)
C20.0844 (16)0.0737 (14)0.0641 (13)−0.0104 (12)0.0138 (12)0.0232 (11)
C30.1041 (19)0.0620 (14)0.0871 (17)0.0111 (13)0.0152 (15)0.0351 (13)
C40.0940 (17)0.0516 (12)0.0889 (16)0.0184 (11)0.0244 (14)0.0216 (11)
C50.0539 (10)0.0329 (8)0.0517 (10)−0.0066 (7)0.0031 (8)0.0006 (7)
C60.0522 (10)0.0305 (8)0.0519 (10)−0.0019 (7)0.0034 (8)−0.0032 (7)
C70.0580 (11)0.0396 (9)0.0551 (10)−0.0025 (8)0.0099 (9)−0.0119 (8)
C80.0756 (14)0.0522 (11)0.0726 (13)0.0050 (10)0.0212 (11)−0.0188 (10)
C90.0737 (14)0.0657 (13)0.0651 (13)−0.0053 (11)0.0261 (11)−0.0210 (11)
C100.0732 (13)0.0590 (11)0.0490 (10)−0.0122 (10)0.0152 (9)−0.0084 (9)
C110.0582 (11)0.0457 (9)0.0476 (10)−0.0050 (8)0.0070 (8)−0.0042 (7)
C120.0451 (9)0.0397 (8)0.0442 (9)−0.0072 (7)0.0038 (7)−0.0087 (7)
C130.0405 (9)0.0345 (8)0.0514 (9)0.0012 (6)0.0059 (7)0.0014 (7)
C140.0395 (8)0.0319 (7)0.0407 (8)0.0008 (6)0.0096 (6)−0.0031 (6)
C150.0416 (8)0.0382 (8)0.0389 (8)0.0030 (6)0.0108 (7)−0.0045 (6)
C160.0441 (9)0.0449 (9)0.0479 (9)−0.0036 (7)0.0108 (7)−0.0122 (7)
C170.0536 (10)0.0381 (9)0.0538 (10)−0.0077 (7)0.0227 (8)−0.0116 (7)
C180.0574 (10)0.0339 (8)0.0473 (9)0.0041 (7)0.0230 (8)−0.0003 (7)
C190.0453 (9)0.0367 (8)0.0426 (8)0.0044 (7)0.0094 (7)0.0000 (6)
C200.0573 (11)0.0504 (10)0.0441 (9)0.0048 (8)0.0010 (8)0.0003 (8)
C210.0589 (12)0.0747 (14)0.0738 (14)−0.0118 (11)−0.0033 (11)−0.0163 (11)
C220.0808 (15)0.0505 (11)0.0862 (15)−0.0231 (10)0.0274 (12)−0.0111 (10)
C230.0940 (16)0.0398 (10)0.0665 (13)0.0052 (10)0.0247 (11)0.0093 (9)
C240.0675 (13)0.0540 (11)0.0624 (12)0.0037 (9)−0.0094 (10)0.0093 (9)
N10.0691 (10)0.0521 (9)0.0671 (10)0.0057 (8)0.0216 (8)0.0180 (8)
N20.0697 (10)0.0346 (7)0.0650 (10)0.0040 (7)0.0129 (8)−0.0039 (7)
N30.0456 (7)0.0305 (6)0.0455 (7)−0.0029 (5)0.0056 (6)−0.0021 (5)
C1—N11.334 (3)C13—H13B0.9700
C1—C21.368 (3)C14—C191.405 (2)
C1—H10.9300C14—C151.406 (2)
C2—C31.360 (4)C15—C161.395 (2)
C2—H20.9300C15—C201.510 (2)
C3—C41.369 (3)C16—C171.398 (3)
C3—H30.9300C16—C211.517 (3)
C4—C51.382 (3)C17—C181.397 (3)
C4—H40.9300C17—C221.517 (2)
C5—N11.328 (2)C18—C191.408 (2)
C5—C61.477 (3)C18—C231.515 (2)
C6—N21.319 (2)C19—C241.514 (3)
C6—N31.382 (2)C20—H20A0.968 (12)
C7—N21.373 (2)C20—H20B0.968 (13)
C7—C81.395 (3)C20—H20C0.968 (12)
C7—C121.401 (2)C21—H21A0.933 (14)
C8—C91.365 (3)C21—H21B0.933 (14)
C8—H80.9300C21—H21C0.933 (14)
C9—C101.396 (3)C22—H22A0.948 (14)
C9—H90.9300C22—H22B0.948 (14)
C10—C111.379 (3)C22—H22C0.948 (14)
C10—H100.9300C23—H23A0.951 (14)
C11—C121.387 (2)C23—H23B0.951 (14)
C11—H110.9300C23—H23C0.951 (13)
C12—N31.384 (2)C24—H24A0.915 (14)
C13—N31.478 (2)C24—H24B0.915 (13)
C13—C141.522 (2)C24—H24C0.915 (13)
C13—H13A0.9700
N1—C1—C2124.4 (2)C15—C16—C17120.14 (16)
N1—C1—H1117.8C15—C16—C21119.82 (17)
C2—C1—H1117.8C17—C16—C21120.05 (16)
C3—C2—C1117.9 (2)C18—C17—C16120.23 (15)
C3—C2—H2121.0C18—C17—C22120.34 (17)
C1—C2—H2121.0C16—C17—C22119.42 (18)
C2—C3—C4118.7 (2)C17—C18—C19119.95 (15)
C2—C3—H3120.6C17—C18—C23119.35 (16)
C4—C3—H3120.6C19—C18—C23120.69 (17)
C3—C4—C5120.2 (2)C14—C19—C18119.69 (15)
C3—C4—H4119.9C14—C19—C24120.95 (15)
C5—C4—H4119.9C18—C19—C24119.35 (15)
N1—C5—C4121.30 (19)C15—C20—H20A109.5
N1—C5—C6120.74 (15)C15—C20—H20B109.5
C4—C5—C6117.96 (18)H20A—C20—H20B109.5
N2—C6—N3112.86 (16)C15—C20—H20C109.5
N2—C6—C5119.77 (15)H20A—C20—H20C109.5
N3—C6—C5127.37 (15)H20B—C20—H20C109.5
N2—C7—C8129.74 (18)C16—C21—H21A109.5
N2—C7—C12110.39 (16)C16—C21—H21B109.5
C8—C7—C12119.87 (18)H21A—C21—H21B109.5
C9—C8—C7118.6 (2)C16—C21—H21C109.5
C9—C8—H8120.7H21A—C21—H21C109.5
C7—C8—H8120.7H21B—C21—H21C109.5
C8—C9—C10120.93 (19)C17—C22—H22A109.5
C8—C9—H9119.5C17—C22—H22B109.5
C10—C9—H9119.5H22A—C22—H22B109.5
C11—C10—C9121.92 (19)C17—C22—H22C109.5
C11—C10—H10119.0H22A—C22—H22C109.5
C9—C10—H10119.0H22B—C22—H22C109.5
C10—C11—C12116.88 (18)C18—C23—H23A109.5
C10—C11—H11121.6C18—C23—H23B109.5
C12—C11—H11121.6H23A—C23—H23B109.5
N3—C12—C11132.66 (16)C18—C23—H23C109.5
N3—C12—C7105.53 (15)H23A—C23—H23C109.5
C11—C12—C7121.80 (17)H23B—C23—H23C109.5
N3—C13—C14113.67 (13)C19—C24—H24A109.5
N3—C13—H13A108.8C19—C24—H24B109.5
C14—C13—H13A108.8H24A—C24—H24B109.5
N3—C13—H13B108.8C19—C24—H24C109.5
C14—C13—H13B108.8H24A—C24—H24C109.5
H13A—C13—H13B107.7H24B—C24—H24C109.5
C19—C14—C15119.78 (14)C5—N1—C1117.39 (17)
C19—C14—C13120.99 (14)C6—N2—C7105.26 (15)
C15—C14—C13119.19 (14)C6—N3—C12105.94 (13)
C16—C15—C14120.06 (15)C6—N3—C13129.98 (14)
C16—C15—C20119.99 (15)C12—N3—C13124.08 (13)
C14—C15—C20119.95 (14)
N1—C1—C2—C3−0.2 (4)C15—C16—C17—C22−179.52 (16)
C1—C2—C3—C4−0.3 (4)C21—C16—C17—C220.7 (3)
C2—C3—C4—C51.0 (4)C16—C17—C18—C191.9 (2)
C3—C4—C5—N1−1.2 (4)C22—C17—C18—C19−178.06 (16)
C3—C4—C5—C6179.1 (2)C16—C17—C18—C23−178.23 (16)
N1—C5—C6—N2171.36 (17)C22—C17—C18—C231.8 (2)
C4—C5—C6—N2−9.0 (3)C15—C14—C19—C18−1.9 (2)
N1—C5—C6—N3−9.7 (3)C13—C14—C19—C18−179.49 (14)
C4—C5—C6—N3169.96 (19)C15—C14—C19—C24177.28 (16)
N2—C7—C8—C9−178.4 (2)C13—C14—C19—C24−0.3 (2)
C12—C7—C8—C91.9 (3)C17—C18—C19—C14−1.2 (2)
C7—C8—C9—C10−0.1 (3)C23—C18—C19—C14178.93 (15)
C8—C9—C10—C11−1.2 (3)C17—C18—C19—C24179.62 (16)
C9—C10—C11—C120.7 (3)C23—C18—C19—C24−0.3 (2)
C10—C11—C12—N3−179.82 (17)C4—C5—N1—C10.7 (3)
C10—C11—C12—C71.1 (3)C6—C5—N1—C1−179.67 (18)
N2—C7—C12—N3−1.48 (19)C2—C1—N1—C50.1 (4)
C8—C7—C12—N3178.23 (17)N3—C6—N2—C70.2 (2)
N2—C7—C12—C11177.79 (16)C5—C6—N2—C7179.26 (15)
C8—C7—C12—C11−2.5 (3)C8—C7—N2—C6−178.8 (2)
N3—C13—C14—C19−121.53 (16)C12—C7—N2—C60.8 (2)
N3—C13—C14—C1560.88 (19)N2—C6—N3—C12−1.10 (19)
C19—C14—C15—C164.3 (2)C5—C6—N3—C12179.91 (16)
C13—C14—C15—C16−178.05 (14)N2—C6—N3—C13178.34 (15)
C19—C14—C15—C20−174.84 (15)C5—C6—N3—C13−0.7 (3)
C13—C14—C15—C202.8 (2)C11—C12—N3—C6−177.65 (18)
C14—C15—C16—C17−3.6 (2)C7—C12—N3—C61.50 (17)
C20—C15—C16—C17175.52 (15)C11—C12—N3—C132.9 (3)
C14—C15—C16—C21176.10 (16)C7—C12—N3—C13−177.98 (14)
C20—C15—C16—C21−4.7 (2)C14—C13—N3—C6−125.33 (17)
C15—C16—C17—C180.5 (2)C14—C13—N3—C1254.0 (2)
C21—C16—C17—C18−179.21 (16)
D—H···AD—HH···AD···AD—H···A
C13—H13A···Cgi0.972.913.6941 (18)139
C13—H13B···N10.972.303.029 (2)131
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C7–C12 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C13—H13ACg i 0.972.913.6941 (18)139
C13—H13B⋯N10.972.303.029 (2)131

Symmetry code: (i) .

  6 in total

1.  Current status of platinum-based antitumor drugs.

Authors:  E Wong; C M Giandomenico
Journal:  Chem Rev       Date:  1999-09-08       Impact factor: 60.622

2.  Spectro- and electrochemical studies of some ruthenium and osmium complexes of 2-(2'-pyridyl)benzimidazole; complexes with intra-molecular charge transfer.

Authors:  M M Khalil; S A Ali; R M Ramadan
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2001-04       Impact factor: 4.098

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

5.  2,4-Di-tert-butyl-6-[(2,5-difluorophenyl)iminomethyl]phenol.

Authors:  Omer Celik; Veli T Kasumov; Ertan Sahin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-17

6.  1-(4-Fluoro-benz-yl)-2-(pyridin-2-yl)-1H-benzimidazole.

Authors:  Omer Celik; Fırat Anĝay; Mustafa Gündoĝan; Mahmut Ulusoy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-26
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.