Literature DB >> 21578378

4,6-Dimethyl-2-p-tolyl-pyrimidine.

Chen Xu, Zhi-Qiang Wang, Fei-Fei Cen, Lin Cheng, Bao-Ming Ji.   

Abstract

The mol-ecule of the title compound, C(13)H(14)N(2), is located on a crystallographic mirror plane. The aromatic rings make a dihedral angle of 3.4 (2)°. The H atoms of the methyl groups on the benzene ring are disordered over two positions; their site-occupation factors were fixed at 0.5. In the crystal, inter-molecular C-H⋯π contacts form infinite chains perpendicular to the b axis.

Entities:  

Year:  2009        PMID: 21578378      PMCID: PMC2971259          DOI: 10.1107/S160053680904210X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was derived from the reaction of p-tolylmercutic chlorides and 4,6-dimethyl-2-iodopyrimidine. For general background to the use of organomercury compounds in cross-coupling reactions, see: Beletskaya et al. (2001 ▶); Braga et al. (2004 ▶). For a related structure, see: Santoni et al. (2008 ▶). For the synthesis, see: Xu et al. (2009a ▶,b ▶).

Experimental

Crystal data

C13H14N2 M = 198.26 Orthorhombic, a = 7.2086 (10) Å b = 12.4668 (18) Å c = 12.4335 (18) Å V = 1117.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 296 K 0.35 × 0.25 × 0.22 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.976, T max = 0.985 7934 measured reflections 1089 independent reflections 777 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.131 S = 1.06 1089 reflections 78 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.14 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680904210X/si2211sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680904210X/si2211Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14N2Dx = 1.179 Mg m3
Mr = 198.26Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PnmaCell parameters from 1634 reflections
a = 7.2086 (10) Åθ = 2.3–23.3°
b = 12.4668 (18) ŵ = 0.07 mm1
c = 12.4335 (18) ÅT = 296 K
V = 1117.4 (3) Å3Block, colourless
Z = 40.35 × 0.25 × 0.22 mm
F(000) = 424
Bruker SMART APEX CCD area-detector diffractometer1089 independent reflections
Radiation source: fine-focus sealed tube777 reflections with I > 2σ(I)
graphiteRint = 0.025
phi and ω scansθmax = 25.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.976, Tmax = 0.985k = −15→15
7934 measured reflectionsl = −15→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0557P)2 + 0.291P] where P = (Fo2 + 2Fc2)/3
1089 reflections(Δ/σ)max < 0.001
78 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.8988 (4)0.25000.6728 (2)0.0709 (8)
H1A0.87810.28700.73940.106*0.50
H1B0.99520.28560.63320.106*0.50
H1C0.93550.17740.68740.106*0.50
C20.7231 (3)0.25000.60770 (17)0.0499 (6)
C30.6383 (2)0.34507 (13)0.57708 (13)0.0544 (5)
H30.69340.41000.59530.065*
C40.4741 (2)0.34546 (12)0.52012 (13)0.0522 (5)
H40.42010.41050.50090.063*
C50.3884 (3)0.25000.49107 (16)0.0449 (5)
C60.2078 (3)0.25000.43367 (17)0.0468 (5)
C7−0.0325 (2)0.34504 (13)0.36089 (13)0.0529 (5)
C8−0.1188 (3)0.25000.33466 (18)0.0549 (6)
H8−0.23310.25000.30000.066*
C9−0.1170 (3)0.45227 (14)0.33570 (16)0.0732 (6)
H9A−0.09740.50010.39510.110*
H9B−0.24770.44380.32350.110*
H9C−0.05980.48140.27240.110*
N10.13292 (18)0.34589 (10)0.41062 (10)0.0509 (4)
U11U22U33U12U13U23
C10.0703 (17)0.0703 (18)0.0720 (17)0.000−0.0169 (14)0.000
C20.0541 (14)0.0531 (13)0.0425 (11)0.000−0.0007 (10)0.000
C30.0600 (11)0.0446 (9)0.0584 (10)−0.0043 (8)−0.0036 (8)−0.0048 (7)
C40.0588 (10)0.0390 (9)0.0589 (10)0.0022 (7)−0.0028 (8)0.0002 (7)
C50.0507 (12)0.0407 (11)0.0433 (11)0.0000.0027 (10)0.000
C60.0545 (13)0.0430 (12)0.0428 (11)0.0000.0018 (10)0.000
C70.0550 (10)0.0541 (10)0.0496 (9)0.0045 (8)0.0009 (7)0.0034 (7)
C80.0510 (13)0.0608 (15)0.0528 (13)0.000−0.0047 (11)0.000
C90.0702 (12)0.0598 (12)0.0896 (14)0.0091 (10)−0.0128 (10)0.0094 (10)
N10.0546 (8)0.0449 (8)0.0532 (8)0.0031 (6)−0.0025 (6)0.0021 (6)
C1—C21.503 (3)C5—C61.485 (3)
C1—H1A0.9600C6—N1i1.3426 (16)
C1—H1B0.9600C6—N11.3426 (16)
C1—H1C0.9600C7—N11.343 (2)
C2—C3i1.387 (2)C7—C81.378 (2)
C2—C31.387 (2)C7—C91.502 (2)
C3—C41.380 (2)C8—C7i1.378 (2)
C3—H30.9300C8—H80.9300
C4—C51.3885 (19)C9—H9A0.9600
C4—H40.9300C9—H9B0.9600
C5—C4i1.3885 (19)C9—H9C0.9600
C2—C1—H1A109.5C4i—C5—C6121.00 (11)
C2—C1—H1B109.5N1i—C6—N1125.8 (2)
H1A—C1—H1B109.5N1i—C6—C5117.07 (10)
C2—C1—H1C109.5N1—C6—C5117.07 (10)
H1A—C1—H1C109.5N1—C7—C8121.12 (16)
H1B—C1—H1C109.5N1—C7—C9116.67 (15)
C3i—C2—C3117.4 (2)C8—C7—C9122.20 (16)
C3i—C2—C1121.28 (11)C7—C8—C7i118.7 (2)
C3—C2—C1121.28 (11)C7—C8—H8120.7
C4—C3—C2121.48 (16)C7i—C8—H8120.7
C4—C3—H3119.3C7—C9—H9A109.5
C2—C3—H3119.3C7—C9—H9B109.5
C3—C4—C5120.81 (16)H9A—C9—H9B109.5
C3—C4—H4119.6C7—C9—H9C109.5
C5—C4—H4119.6H9A—C9—H9C109.5
C4—C5—C4i118.0 (2)H9B—C9—H9C109.5
C4—C5—C6121.00 (11)C6—N1—C7116.62 (15)
C3i—C2—C3—C41.2 (3)C4i—C5—C6—N1178.65 (17)
C1—C2—C3—C4−178.02 (19)N1—C7—C8—C7i0.3 (3)
C2—C3—C4—C5−0.3 (3)C9—C7—C8—C7i−179.77 (14)
C3—C4—C5—C4i−0.7 (3)N1i—C6—N1—C70.6 (3)
C3—C4—C5—C6177.47 (16)C5—C6—N1—C7−178.53 (15)
C4—C5—C6—N1i−178.65 (17)C8—C7—N1—C6−0.4 (3)
C4i—C5—C6—N1i−0.6 (3)C9—C7—N1—C6179.62 (16)
C4—C5—C6—N10.6 (3)
D—H···AD—HH···AD···AD—H···A
C8—H8···Cg1ii0.932.793.638 (2)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8⋯Cg1i0.932.793.638 (2)152

Symmetry code: (i) . Cg1 is the centroid of the pyrimidine ring.

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