| Literature DB >> 21578159 |
Hao Wang, Wen-Dong Song, Shi-Jie Li, Dong-Liang Miao, Jin Liu.
Abstract
In the mononuclear title compound, [Co(C(9)H(4)N(2)O(4))(2)(H(2)O)(4)]·2C(3)H(7)NO·2H(2)O, the Co(II) atom, which lies on a center of inversion, is coordinated by four water mol-ecules and two N atoms from two two symmetry-related 1H-benzimidazole-5,6-dicarboxyl-ate ligands in a distorted octa-hedral geometry. The packing is governed by inter-molecular O-H⋯O and N-H⋯O hydrogen-bonding inter-actions.Entities:
Year: 2009 PMID: 21578159 PMCID: PMC2971142 DOI: 10.1107/S1600536809043177
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Co(C9H5N2O4)2(H2O)4]·2C3H7NO·2H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3420 reflections | |
| θ = 3.3–27.4° | |
| µ = 0.64 mm−1 | |
| α = 100.82 (3)° | |
| β = 102.98 (3)° | Block, red |
| γ = 114.11 (3)° | 0.30 × 0.24 × 0.21 mm |
| Rigaku/MSC Mercury CCD diffractometer | 2751 independent reflections |
| Radiation source: fine-focus sealed tube | 2594 reflections with |
| graphite | |
| ω scans | θmax = 25.2°, θmin = 3.3° |
| Absorption correction: multi-scan ( | |
| 6161 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2751 reflections | (Δ/σ)max < 0.001 |
| 219 parameters | Δρmax = 0.58 e Å−3 |
| 10 restraints | Δρmin = −0.44 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.1417 (4) | 0.8422 (3) | 0.1200 (2) | 0.0279 (6) | |
| C2 | 0.2484 (3) | 0.8904 (3) | 0.2467 (2) | 0.0247 (5) | |
| C3 | 0.1906 (3) | 0.7887 (3) | 0.3191 (2) | 0.0269 (5) | |
| H3 | 0.2595 | 0.8201 | 0.4020 | 0.032* | |
| C4 | 0.0277 (3) | 0.6389 (3) | 0.2654 (2) | 0.0248 (5) | |
| C5 | −0.0742 (3) | 0.5940 (3) | 0.1405 (2) | 0.0272 (6) | |
| C6 | −0.0194 (4) | 0.6932 (4) | 0.0667 (2) | 0.0309 (6) | |
| H6 | −0.0888 | 0.6606 | −0.0163 | 0.037* | |
| C7 | 0.1921 (4) | 0.9449 (4) | 0.0363 (3) | 0.0324 (6) | |
| C8 | 0.4297 (3) | 1.0478 (3) | 0.3103 (2) | 0.0263 (5) | |
| C9 | −0.2117 (4) | 0.4034 (3) | 0.2225 (3) | 0.0310 (6) | |
| H9 | −0.2984 | 0.3064 | 0.2299 | 0.037* | |
| C10 | 0.6732 (4) | 0.7964 (4) | 0.1713 (3) | 0.0344 (6) | |
| H10 | 0.7801 | 0.8972 | 0.1955 | 0.041* | |
| N3 | 0.6382 (3) | 0.7242 (3) | 0.2550 (2) | 0.0340 (5) | |
| Co1 | 0.0000 | 0.5000 | 0.5000 | 0.02238 (18) | |
| N1 | −0.2262 (3) | 0.4426 (3) | 0.1168 (2) | 0.0315 (5) | |
| H1 | −0.3137 | 0.3846 | 0.0473 | 0.038* | |
| N2 | −0.0630 (3) | 0.5150 (3) | 0.3148 (2) | 0.0282 (5) | |
| C12 | 0.4674 (5) | 0.5710 (5) | 0.2251 (4) | 0.0552 (9) | |
| H3A | 0.3742 | 0.6008 | 0.2330 | 0.083* | |
| H3B | 0.4829 | 0.5094 | 0.2812 | 0.083* | |
| H3C | 0.4330 | 0.5021 | 0.1414 | 0.083* | |
| C11 | 0.7568 (6) | 0.8059 (5) | 0.3848 (3) | 0.0547 (9) | |
| H4A | 0.8640 | 0.9036 | 0.3911 | 0.082* | |
| H4B | 0.7907 | 0.7283 | 0.4145 | 0.082* | |
| H4C | 0.6937 | 0.8393 | 0.4340 | 0.082* | |
| O1 | 0.1079 (3) | 0.8972 (3) | −0.0726 (2) | 0.0582 (7) | |
| O2 | 0.3337 (4) | 1.0933 (3) | 0.0904 (2) | 0.0635 (8) | |
| O3 | 0.4308 (3) | 1.1767 (3) | 0.3708 (2) | 0.0458 (6) | |
| O4 | 0.5660 (3) | 1.0359 (3) | 0.3035 (3) | 0.0524 (6) | |
| O5 | 0.5725 (3) | 0.7391 (3) | 0.06005 (19) | 0.0457 (6) | |
| O1W | 0.0884 (2) | 0.7574 (2) | 0.57397 (17) | 0.0300 (4) | |
| H2W | 0.0296 | 0.7784 | 0.6176 | 0.045* | |
| H1W | 0.2007 | 0.8133 | 0.6126 | 0.045* | |
| O2W | 0.2619 (3) | 0.5455 (2) | 0.50191 (19) | 0.0360 (5) | |
| H4W | 0.2576 | 0.4881 | 0.4347 | 0.054* | |
| H3W | 0.3630 | 0.6321 | 0.5381 | 0.054* | |
| O3W | 0.1590 (3) | 0.2539 (3) | 0.3083 (2) | 0.0498 (6) | |
| H5W | 0.2452 | 0.2312 | 0.3275 | 0.075* | |
| H6W | 0.0905 | 0.2004 | 0.2343 | 0.075* | |
| H2 | 0.367 (6) | 1.146 (5) | 0.041 (3) | 0.075* |
| C1 | 0.0271 (13) | 0.0262 (13) | 0.0258 (13) | 0.0076 (11) | 0.0094 (10) | 0.0090 (10) |
| C2 | 0.0231 (12) | 0.0223 (12) | 0.0259 (13) | 0.0076 (10) | 0.0088 (10) | 0.0076 (10) |
| C3 | 0.0258 (13) | 0.0260 (13) | 0.0217 (12) | 0.0073 (11) | 0.0052 (10) | 0.0071 (10) |
| C4 | 0.0247 (12) | 0.0238 (12) | 0.0245 (12) | 0.0089 (10) | 0.0098 (10) | 0.0089 (10) |
| C5 | 0.0248 (13) | 0.0230 (13) | 0.0260 (13) | 0.0052 (11) | 0.0080 (10) | 0.0062 (10) |
| C6 | 0.0303 (14) | 0.0302 (14) | 0.0224 (13) | 0.0067 (12) | 0.0060 (11) | 0.0082 (11) |
| C7 | 0.0322 (14) | 0.0304 (14) | 0.0262 (14) | 0.0071 (12) | 0.0081 (11) | 0.0111 (11) |
| C8 | 0.0232 (13) | 0.0248 (13) | 0.0257 (13) | 0.0066 (11) | 0.0064 (10) | 0.0101 (11) |
| C9 | 0.0277 (14) | 0.0244 (13) | 0.0306 (14) | 0.0026 (11) | 0.0088 (11) | 0.0103 (11) |
| C10 | 0.0334 (15) | 0.0294 (14) | 0.0290 (14) | 0.0074 (12) | 0.0047 (12) | 0.0088 (11) |
| N3 | 0.0404 (13) | 0.0350 (13) | 0.0270 (12) | 0.0174 (11) | 0.0105 (10) | 0.0122 (10) |
| Co1 | 0.0203 (3) | 0.0186 (3) | 0.0219 (3) | 0.0040 (2) | 0.00591 (19) | 0.00645 (19) |
| N1 | 0.0243 (11) | 0.0260 (12) | 0.0229 (11) | −0.0027 (9) | 0.0002 (9) | 0.0055 (9) |
| N2 | 0.0271 (11) | 0.0238 (11) | 0.0262 (11) | 0.0046 (9) | 0.0083 (9) | 0.0097 (9) |
| C12 | 0.052 (2) | 0.057 (2) | 0.060 (2) | 0.0169 (18) | 0.0275 (18) | 0.0332 (18) |
| C11 | 0.085 (3) | 0.055 (2) | 0.0270 (16) | 0.041 (2) | 0.0084 (16) | 0.0138 (15) |
| O1 | 0.0560 (15) | 0.0498 (14) | 0.0286 (11) | −0.0072 (11) | −0.0002 (10) | 0.0191 (10) |
| O2 | 0.0580 (15) | 0.0463 (14) | 0.0325 (12) | −0.0183 (12) | −0.0036 (11) | 0.0210 (11) |
| O3 | 0.0293 (11) | 0.0302 (11) | 0.0569 (14) | 0.0051 (9) | 0.0109 (10) | −0.0062 (10) |
| O4 | 0.0218 (10) | 0.0340 (12) | 0.0823 (18) | 0.0077 (9) | 0.0093 (11) | −0.0002 (11) |
| O5 | 0.0399 (12) | 0.0433 (12) | 0.0270 (11) | −0.0014 (10) | 0.0014 (9) | 0.0144 (9) |
| O1W | 0.0238 (9) | 0.0245 (9) | 0.0318 (10) | 0.0058 (8) | 0.0057 (8) | 0.0051 (8) |
| O2W | 0.0250 (10) | 0.0296 (10) | 0.0399 (11) | 0.0049 (8) | 0.0114 (8) | 0.0004 (8) |
| O3W | 0.0428 (13) | 0.0590 (15) | 0.0395 (12) | 0.0271 (12) | 0.0088 (10) | −0.0033 (11) |
| C1—C6 | 1.381 (4) | N3—C12 | 1.462 (4) |
| C1—C2 | 1.424 (4) | N3—C11 | 1.463 (4) |
| C1—C7 | 1.489 (4) | Co1—O1W | 2.086 (2) |
| C2—C3 | 1.387 (4) | Co1—O1Wi | 2.086 (2) |
| C2—C8 | 1.513 (4) | Co1—O2Wi | 2.1007 (19) |
| C3—C4 | 1.393 (4) | Co1—O2W | 2.1007 (19) |
| C3—H3 | 0.9300 | Co1—N2 | 2.146 (2) |
| C4—N2 | 1.395 (3) | Co1—N2i | 2.146 (2) |
| C4—C5 | 1.398 (4) | N1—H1 | 0.8600 |
| C5—C6 | 1.382 (4) | C12—H3A | 0.9600 |
| C5—N1 | 1.382 (3) | C12—H3B | 0.9600 |
| C6—H6 | 0.9300 | C12—H3C | 0.9600 |
| C7—O1 | 1.201 (4) | C11—H4A | 0.9600 |
| C7—O2 | 1.304 (4) | C11—H4B | 0.9600 |
| C8—O4 | 1.234 (3) | C11—H4C | 0.9600 |
| C8—O3 | 1.250 (3) | O2—H2 | 0.839 (10) |
| C9—N2 | 1.315 (4) | O1W—H2W | 0.8400 |
| C9—N1 | 1.338 (4) | O1W—H1W | 0.8400 |
| C9—H9 | 0.9300 | O2W—H4W | 0.8399 |
| C10—O5 | 1.253 (3) | O2W—H3W | 0.8399 |
| C10—N3 | 1.299 (4) | O3W—H5W | 0.8400 |
| C10—H10 | 0.9300 | O3W—H6W | 0.8399 |
| C6—C1—C2 | 120.8 (2) | O1Wi—Co1—O2W | 88.64 (8) |
| C6—C1—C7 | 115.4 (2) | O2Wi—Co1—O2W | 180.0 |
| C2—C1—C7 | 123.8 (2) | O1W—Co1—N2 | 90.82 (9) |
| C3—C2—C1 | 120.3 (2) | O1Wi—Co1—N2 | 89.18 (9) |
| C3—C2—C8 | 115.8 (2) | O2Wi—Co1—N2 | 90.29 (9) |
| C1—C2—C8 | 123.9 (2) | O2W—Co1—N2 | 89.71 (9) |
| C2—C3—C4 | 118.9 (2) | O1W—Co1—N2i | 89.18 (9) |
| C2—C3—H3 | 120.6 | O1Wi—Co1—N2i | 90.82 (9) |
| C4—C3—H3 | 120.6 | O2Wi—Co1—N2i | 89.71 (9) |
| C3—C4—N2 | 131.3 (2) | O2W—Co1—N2i | 90.29 (9) |
| C3—C4—C5 | 119.7 (2) | N2—Co1—N2i | 179.999 (1) |
| N2—C4—C5 | 108.9 (2) | C9—N1—C5 | 107.1 (2) |
| C6—C5—N1 | 132.1 (2) | C9—N1—H1 | 126.5 |
| C6—C5—C4 | 122.4 (2) | C5—N1—H1 | 126.5 |
| N1—C5—C4 | 105.5 (2) | C9—N2—C4 | 104.9 (2) |
| C1—C6—C5 | 117.9 (2) | C9—N2—Co1 | 124.00 (18) |
| C1—C6—H6 | 121.0 | C4—N2—Co1 | 130.98 (18) |
| C5—C6—H6 | 121.0 | N3—C12—H3A | 109.5 |
| O1—C7—O2 | 121.9 (3) | N3—C12—H3B | 109.5 |
| O1—C7—C1 | 123.1 (3) | H3A—C12—H3B | 109.5 |
| O2—C7—C1 | 115.0 (2) | N3—C12—H3C | 109.5 |
| O4—C8—O3 | 125.2 (3) | H3A—C12—H3C | 109.5 |
| O4—C8—C2 | 117.0 (2) | H3B—C12—H3C | 109.5 |
| O3—C8—C2 | 117.7 (2) | N3—C11—H4A | 109.5 |
| N2—C9—N1 | 113.6 (2) | N3—C11—H4B | 109.5 |
| N2—C9—H9 | 123.2 | H4A—C11—H4B | 109.5 |
| N1—C9—H9 | 123.2 | N3—C11—H4C | 109.5 |
| O5—C10—N3 | 124.3 (3) | H4A—C11—H4C | 109.5 |
| O5—C10—H10 | 117.8 | H4B—C11—H4C | 109.5 |
| N3—C10—H10 | 117.8 | C7—O2—H2 | 114 (3) |
| C10—N3—C12 | 120.6 (3) | Co1—O1W—H2W | 113.1 |
| C10—N3—C11 | 120.7 (3) | Co1—O1W—H1W | 113.3 |
| C12—N3—C11 | 118.2 (3) | H2W—O1W—H1W | 110.9 |
| O1W—Co1—O1Wi | 180.0 | Co1—O2W—H4W | 110.8 |
| O1W—Co1—O2Wi | 88.64 (8) | Co1—O2W—H3W | 130.9 |
| O1Wi—Co1—O2Wi | 91.36 (8) | H4W—O2W—H3W | 112.2 |
| O1W—Co1—O2W | 91.36 (8) | H5W—O3W—H6W | 112.2 |
| H··· | ||||
| O2—H2···O5ii | 0.84 (1) | 1.75 (1) | 2.588 (3) | 177 (5) |
| O3W—H6W···O1iii | 0.84 | 1.98 | 2.800 (3) | 165 |
| O3W—H5W···O3iv | 0.84 | 1.85 | 2.686 (3) | 179 |
| O2W—H3W···O3v | 0.84 | 1.80 | 2.636 (3) | 174 |
| O2W—H4W···O3W | 0.84 | 2.06 | 2.811 (3) | 148 |
| O1W—H1W···O4v | 0.84 | 1.79 | 2.624 (3) | 170 |
| O1W—H2W···O3Wi | 0.84 | 1.94 | 2.749 (3) | 161 |
| N1—H1···O5iii | 0.86 | 1.98 | 2.782 (3) | 154 |
| N1—H1···O5iii | 0.86 | 1.98 | 2.782 (3) | 154 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯O5i | 0.839 (10) | 1.750 (11) | 2.588 (3) | 177 (5) |
| O3 | 0.84 | 1.98 | 2.800 (3) | 165 |
| O3 | 0.84 | 1.85 | 2.686 (3) | 179 |
| O2 | 0.84 | 1.80 | 2.636 (3) | 174 |
| O2 | 0.84 | 2.06 | 2.811 (3) | 148 |
| O1 | 0.84 | 1.79 | 2.624 (3) | 170 |
| O1 | 0.84 | 1.94 | 2.749 (3) | 161 |
| N1—H1⋯O5ii | 0.86 | 1.98 | 2.782 (3) | 154 |
| N1—H1⋯O5ii | 0.86 | 1.98 | 2.782 (3) | 154 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .