Literature DB >> 21578159

Tetra-aqua-bis-(1H-benzimidazole-5,6-di-carboxyl-ato-κN)cobalt(II) dimethyl-formamide disolvate dihydrate.

Hao Wang, Wen-Dong Song, Shi-Jie Li, Dong-Liang Miao, Jin Liu.   

Abstract

In the mononuclear title compound, [Co(C(9)H(4)N(2)O(4))(2)(H(2)O)(4)]·2C(3)H(7)NO·2H(2)O, the Co(II) atom, which lies on a center of inversion, is coordinated by four water mol-ecules and two N atoms from two two symmetry-related 1H-benzimidazole-5,6-dicarboxyl-ate ligands in a distorted octa-hedral geometry. The packing is governed by inter-molecular O-H⋯O and N-H⋯O hydrogen-bonding inter-actions.

Entities:  

Year:  2009        PMID: 21578159      PMCID: PMC2971142          DOI: 10.1107/S1600536809043177

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For 1H-benzimidazole-5,6-dicarboxyl­ate complexes, see: Song et al. (2009a ▶,b ▶,c ▶).

Experimental

Crystal data

[Co(C9H5N2O4)2(H2O)4]·2C3H7NO·2H2O M = 723.52 Triclinic, a = 8.5612 (17) Å b = 9.1475 (18) Å c = 11.642 (2) Å α = 100.82 (3)° β = 102.98 (3)° γ = 114.11 (3)° V = 769.9 (3) Å3 Z = 1 Mo Kα radiation μ = 0.64 mm−1 T = 293 K 0.30 × 0.24 × 0.21 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.831, T max = 0.877 6161 measured reflections 2751 independent reflections 2594 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.127 S = 0.96 2751 reflections 219 parameters 10 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.58 e Å−3 Δρmin = −0.44 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809043177/ng2669sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809043177/ng2669Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C9H5N2O4)2(H2O)4]·2C3H7NO·2H2OZ = 1
Mr = 723.52F(000) = 377
Triclinic, P1Dx = 1.561 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5612 (17) ÅCell parameters from 3420 reflections
b = 9.1475 (18) Åθ = 3.3–27.4°
c = 11.642 (2) ŵ = 0.64 mm1
α = 100.82 (3)°T = 293 K
β = 102.98 (3)°Block, red
γ = 114.11 (3)°0.30 × 0.24 × 0.21 mm
V = 769.9 (3) Å3
Rigaku/MSC Mercury CCD diffractometer2751 independent reflections
Radiation source: fine-focus sealed tube2594 reflections with I > 2σ(I)
graphiteRint = 0.020
ω scansθmax = 25.2°, θmin = 3.3°
Absorption correction: multi-scan (REQAB; Jacobson, 1998)h = −10→10
Tmin = 0.831, Tmax = 0.877k = −10→10
6161 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H atoms treated by a mixture of independent and constrained refinement
S = 0.96w = 1/[σ2(Fo2) + (0.0795P)2 + 1.194P] where P = (Fo2 + 2Fc2)/3
2751 reflections(Δ/σ)max < 0.001
219 parametersΔρmax = 0.58 e Å3
10 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1417 (4)0.8422 (3)0.1200 (2)0.0279 (6)
C20.2484 (3)0.8904 (3)0.2467 (2)0.0247 (5)
C30.1906 (3)0.7887 (3)0.3191 (2)0.0269 (5)
H30.25950.82010.40200.032*
C40.0277 (3)0.6389 (3)0.2654 (2)0.0248 (5)
C5−0.0742 (3)0.5940 (3)0.1405 (2)0.0272 (6)
C6−0.0194 (4)0.6932 (4)0.0667 (2)0.0309 (6)
H6−0.08880.6606−0.01630.037*
C70.1921 (4)0.9449 (4)0.0363 (3)0.0324 (6)
C80.4297 (3)1.0478 (3)0.3103 (2)0.0263 (5)
C9−0.2117 (4)0.4034 (3)0.2225 (3)0.0310 (6)
H9−0.29840.30640.22990.037*
C100.6732 (4)0.7964 (4)0.1713 (3)0.0344 (6)
H100.78010.89720.19550.041*
N30.6382 (3)0.7242 (3)0.2550 (2)0.0340 (5)
Co10.00000.50000.50000.02238 (18)
N1−0.2262 (3)0.4426 (3)0.1168 (2)0.0315 (5)
H1−0.31370.38460.04730.038*
N2−0.0630 (3)0.5150 (3)0.3148 (2)0.0282 (5)
C120.4674 (5)0.5710 (5)0.2251 (4)0.0552 (9)
H3A0.37420.60080.23300.083*
H3B0.48290.50940.28120.083*
H3C0.43300.50210.14140.083*
C110.7568 (6)0.8059 (5)0.3848 (3)0.0547 (9)
H4A0.86400.90360.39110.082*
H4B0.79070.72830.41450.082*
H4C0.69370.83930.43400.082*
O10.1079 (3)0.8972 (3)−0.0726 (2)0.0582 (7)
O20.3337 (4)1.0933 (3)0.0904 (2)0.0635 (8)
O30.4308 (3)1.1767 (3)0.3708 (2)0.0458 (6)
O40.5660 (3)1.0359 (3)0.3035 (3)0.0524 (6)
O50.5725 (3)0.7391 (3)0.06005 (19)0.0457 (6)
O1W0.0884 (2)0.7574 (2)0.57397 (17)0.0300 (4)
H2W0.02960.77840.61760.045*
H1W0.20070.81330.61260.045*
O2W0.2619 (3)0.5455 (2)0.50191 (19)0.0360 (5)
H4W0.25760.48810.43470.054*
H3W0.36300.63210.53810.054*
O3W0.1590 (3)0.2539 (3)0.3083 (2)0.0498 (6)
H5W0.24520.23120.32750.075*
H6W0.09050.20040.23430.075*
H20.367 (6)1.146 (5)0.041 (3)0.075*
U11U22U33U12U13U23
C10.0271 (13)0.0262 (13)0.0258 (13)0.0076 (11)0.0094 (10)0.0090 (10)
C20.0231 (12)0.0223 (12)0.0259 (13)0.0076 (10)0.0088 (10)0.0076 (10)
C30.0258 (13)0.0260 (13)0.0217 (12)0.0073 (11)0.0052 (10)0.0071 (10)
C40.0247 (12)0.0238 (12)0.0245 (12)0.0089 (10)0.0098 (10)0.0089 (10)
C50.0248 (13)0.0230 (13)0.0260 (13)0.0052 (11)0.0080 (10)0.0062 (10)
C60.0303 (14)0.0302 (14)0.0224 (13)0.0067 (12)0.0060 (11)0.0082 (11)
C70.0322 (14)0.0304 (14)0.0262 (14)0.0071 (12)0.0081 (11)0.0111 (11)
C80.0232 (13)0.0248 (13)0.0257 (13)0.0066 (11)0.0064 (10)0.0101 (11)
C90.0277 (14)0.0244 (13)0.0306 (14)0.0026 (11)0.0088 (11)0.0103 (11)
C100.0334 (15)0.0294 (14)0.0290 (14)0.0074 (12)0.0047 (12)0.0088 (11)
N30.0404 (13)0.0350 (13)0.0270 (12)0.0174 (11)0.0105 (10)0.0122 (10)
Co10.0203 (3)0.0186 (3)0.0219 (3)0.0040 (2)0.00591 (19)0.00645 (19)
N10.0243 (11)0.0260 (12)0.0229 (11)−0.0027 (9)0.0002 (9)0.0055 (9)
N20.0271 (11)0.0238 (11)0.0262 (11)0.0046 (9)0.0083 (9)0.0097 (9)
C120.052 (2)0.057 (2)0.060 (2)0.0169 (18)0.0275 (18)0.0332 (18)
C110.085 (3)0.055 (2)0.0270 (16)0.041 (2)0.0084 (16)0.0138 (15)
O10.0560 (15)0.0498 (14)0.0286 (11)−0.0072 (11)−0.0002 (10)0.0191 (10)
O20.0580 (15)0.0463 (14)0.0325 (12)−0.0183 (12)−0.0036 (11)0.0210 (11)
O30.0293 (11)0.0302 (11)0.0569 (14)0.0051 (9)0.0109 (10)−0.0062 (10)
O40.0218 (10)0.0340 (12)0.0823 (18)0.0077 (9)0.0093 (11)−0.0002 (11)
O50.0399 (12)0.0433 (12)0.0270 (11)−0.0014 (10)0.0014 (9)0.0144 (9)
O1W0.0238 (9)0.0245 (9)0.0318 (10)0.0058 (8)0.0057 (8)0.0051 (8)
O2W0.0250 (10)0.0296 (10)0.0399 (11)0.0049 (8)0.0114 (8)0.0004 (8)
O3W0.0428 (13)0.0590 (15)0.0395 (12)0.0271 (12)0.0088 (10)−0.0033 (11)
C1—C61.381 (4)N3—C121.462 (4)
C1—C21.424 (4)N3—C111.463 (4)
C1—C71.489 (4)Co1—O1W2.086 (2)
C2—C31.387 (4)Co1—O1Wi2.086 (2)
C2—C81.513 (4)Co1—O2Wi2.1007 (19)
C3—C41.393 (4)Co1—O2W2.1007 (19)
C3—H30.9300Co1—N22.146 (2)
C4—N21.395 (3)Co1—N2i2.146 (2)
C4—C51.398 (4)N1—H10.8600
C5—C61.382 (4)C12—H3A0.9600
C5—N11.382 (3)C12—H3B0.9600
C6—H60.9300C12—H3C0.9600
C7—O11.201 (4)C11—H4A0.9600
C7—O21.304 (4)C11—H4B0.9600
C8—O41.234 (3)C11—H4C0.9600
C8—O31.250 (3)O2—H20.839 (10)
C9—N21.315 (4)O1W—H2W0.8400
C9—N11.338 (4)O1W—H1W0.8400
C9—H90.9300O2W—H4W0.8399
C10—O51.253 (3)O2W—H3W0.8399
C10—N31.299 (4)O3W—H5W0.8400
C10—H100.9300O3W—H6W0.8399
C6—C1—C2120.8 (2)O1Wi—Co1—O2W88.64 (8)
C6—C1—C7115.4 (2)O2Wi—Co1—O2W180.0
C2—C1—C7123.8 (2)O1W—Co1—N290.82 (9)
C3—C2—C1120.3 (2)O1Wi—Co1—N289.18 (9)
C3—C2—C8115.8 (2)O2Wi—Co1—N290.29 (9)
C1—C2—C8123.9 (2)O2W—Co1—N289.71 (9)
C2—C3—C4118.9 (2)O1W—Co1—N2i89.18 (9)
C2—C3—H3120.6O1Wi—Co1—N2i90.82 (9)
C4—C3—H3120.6O2Wi—Co1—N2i89.71 (9)
C3—C4—N2131.3 (2)O2W—Co1—N2i90.29 (9)
C3—C4—C5119.7 (2)N2—Co1—N2i179.999 (1)
N2—C4—C5108.9 (2)C9—N1—C5107.1 (2)
C6—C5—N1132.1 (2)C9—N1—H1126.5
C6—C5—C4122.4 (2)C5—N1—H1126.5
N1—C5—C4105.5 (2)C9—N2—C4104.9 (2)
C1—C6—C5117.9 (2)C9—N2—Co1124.00 (18)
C1—C6—H6121.0C4—N2—Co1130.98 (18)
C5—C6—H6121.0N3—C12—H3A109.5
O1—C7—O2121.9 (3)N3—C12—H3B109.5
O1—C7—C1123.1 (3)H3A—C12—H3B109.5
O2—C7—C1115.0 (2)N3—C12—H3C109.5
O4—C8—O3125.2 (3)H3A—C12—H3C109.5
O4—C8—C2117.0 (2)H3B—C12—H3C109.5
O3—C8—C2117.7 (2)N3—C11—H4A109.5
N2—C9—N1113.6 (2)N3—C11—H4B109.5
N2—C9—H9123.2H4A—C11—H4B109.5
N1—C9—H9123.2N3—C11—H4C109.5
O5—C10—N3124.3 (3)H4A—C11—H4C109.5
O5—C10—H10117.8H4B—C11—H4C109.5
N3—C10—H10117.8C7—O2—H2114 (3)
C10—N3—C12120.6 (3)Co1—O1W—H2W113.1
C10—N3—C11120.7 (3)Co1—O1W—H1W113.3
C12—N3—C11118.2 (3)H2W—O1W—H1W110.9
O1W—Co1—O1Wi180.0Co1—O2W—H4W110.8
O1W—Co1—O2Wi88.64 (8)Co1—O2W—H3W130.9
O1Wi—Co1—O2Wi91.36 (8)H4W—O2W—H3W112.2
O1W—Co1—O2W91.36 (8)H5W—O3W—H6W112.2
D—H···AD—HH···AD···AD—H···A
O2—H2···O5ii0.84 (1)1.75 (1)2.588 (3)177 (5)
O3W—H6W···O1iii0.841.982.800 (3)165
O3W—H5W···O3iv0.841.852.686 (3)179
O2W—H3W···O3v0.841.802.636 (3)174
O2W—H4W···O3W0.842.062.811 (3)148
O1W—H1W···O4v0.841.792.624 (3)170
O1W—H2W···O3Wi0.841.942.749 (3)161
N1—H1···O5iii0.861.982.782 (3)154
N1—H1···O5iii0.861.982.782 (3)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O5i0.839 (10)1.750 (11)2.588 (3)177 (5)
O3W—H6W⋯O1ii0.841.982.800 (3)165
O3W—H5W⋯O3iii0.841.852.686 (3)179
O2W—H3W⋯O3iv0.841.802.636 (3)174
O2W—H4W⋯O3W0.842.062.811 (3)148
O1W—H1W⋯O4iv0.841.792.624 (3)170
O1W—H2W⋯O3Wv0.841.942.749 (3)161
N1—H1⋯O5ii0.861.982.782 (3)154
N1—H1⋯O5ii0.861.982.782 (3)154

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Penta-aqua-(1H-benzimidazole-5,6-di-carboxyl-ato-κN)cobalt(II) penta-hydrate.

Authors:  Wen-Dong Song; Hao Wang; Shi-Jie Li; Pei-Wen Qin; Shi-Wei Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29

3.  catena-Poly[[diaqua-(1,10-phenanthroline-κN,N')nickel(II)]-μ-1H-benzimidazole-5,6-dicarboxyl-ato-κN:O].

Authors:  Wen-Dong Song; Hao Wang; Shi-Wei Hu; Pei-Wen Qin; Shi-Jie Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29

4.  Penta-aqua-(1H-benzimidazole-5,6-dicarboxyl-ato-κN)nickel(II) penta-hydrate.

Authors:  Wen-Dong Song; Hao Wang; Pei-Wen Qin; Shi-Jie Li; Shi-Wei Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-23
  4 in total
  2 in total

1.  Poly[[aqua-(μ(4)-1H-benzimidazole-5,6-dicarboxyl-ato-κN:O:O:O)(N,N-dimethyl-formamide-κO)cadmium(II)] dihydrate].

Authors:  Hao Wang; Shi-Jie Li; Wen-Dong Song; Xiao-Fei Li; Dong-Liang Miao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-30

2.  Poly[diaqua-(μ(3)-1H-benzimidazole-5,6-dicarboxyl-ato-κN:O,O:O)magnesium(II)].

Authors:  Hao Wang; Xiao-Fei Li; Wen-Dong Song; Xiao-Tian Ma; Juan-Hua Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-13
  2 in total

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