Literature DB >> 21579672

Poly[[aqua-(μ(4)-1H-benzimidazole-5,6-dicarboxyl-ato-κN:O:O:O)(N,N-dimethyl-formamide-κO)cadmium(II)] dihydrate].

Hao Wang, Shi-Jie Li, Wen-Dong Song, Xiao-Fei Li, Dong-Liang Miao.   

Abstract

In the title compound, {[Cd(C(9)H(4)N(2)O(4))(C(3)H(7)NO)(H(2)O)]·2H(2)O}(n), the Cd(II) atom is coordinated by one N atom and three O atoms from four different 1H-benzimidazole-5,6-dicarboxyl-ate (Hbidc) ligands, one O atom from one dimethyl-formamide ligand, and one O atom from a water mol-ecule in a distorted octa-hedral geometry. The Hbidc ligands connect the Cd atoms into a two-dimensional network parallel to (001). N-H⋯O and O-H⋯O hydrogen bonds involving the water molecules are observed in the crystal structure.

Entities:  

Year:  2010        PMID: 21579672      PMCID: PMC2979735          DOI: 10.1107/S1600536810003065

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures of 1H-benzimidazole-5,6-dicarboxyl­ate complexes, see: Song, Wang, Hu et al. (2009 ▶); Song, Wang, Li et al. (2009 ▶); Song, Wang, Qin et al. (2009 ▶); Wang et al. (2009 ▶).

Experimental

Crystal data

[Cd(C9H4N2O4)(C3H7NO)(H2O)]·2H2O M = 443.69 Triclinic, a = 7.7729 (16) Å b = 9.1648 (18) Å c = 11.458 (2) Å α = 102.76 (3)° β = 97.70 (3)° γ = 94.96 (3)° V = 783.2 (3) Å3 Z = 2 Mo Kα radiation μ = 1.44 mm−1 T = 293 K 0.29 × 0.25 × 0.21 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.680, T max = 0.752 6197 measured reflections 2800 independent reflections 1539 reflections with I > 2σ(I) R int = 0.121

Refinement

R[F 2 > 2σ(F 2)] = 0.086 wR(F 2) = 0.223 S = 1.14 2800 reflections 219 parameters 9 restraints H-atom parameters constrained Δρmax = 2.12 e Å−3 Δρmin = −1.80 e Å−3 Data collection: CrystalStructure (Rigaku/MSC, 2002 ▶); cell refinement: CrystalStructure; data reduction: CrystalStructure; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810003065/hy2275sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810003065/hy2275Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C9H4N2O4)(C3H7NO)(H2O)]·2H2OZ = 2
Mr = 443.69F(000) = 444
Triclinic, P1Dx = 1.881 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7729 (16) ÅCell parameters from 3441 reflections
b = 9.1648 (18) Åθ = 3.3–27.4°
c = 11.458 (2) ŵ = 1.44 mm1
α = 102.76 (3)°T = 293 K
β = 97.70 (3)°Block, colorless
γ = 94.96 (3)°0.29 × 0.25 × 0.21 mm
V = 783.2 (3) Å3
Rigaku/MSC Mercury CCD diffractometer2800 independent reflections
Radiation source: fine-focus sealed tube1539 reflections with I > 2σ(I)
graphiteRint = 0.121
ω scansθmax = 25.2°, θmin = 3.3°
Absorption correction: multi-scan (REQAB; Jacobson, 1998)h = −9→7
Tmin = 0.680, Tmax = 0.752k = −10→10
6197 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.086Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.223H-atom parameters constrained
S = 1.14w = 1/[σ2(Fo2) + (0.0683P)2 + 2.7388P] where P = (Fo2 + 2Fc2)/3
2800 reflections(Δ/σ)max < 0.001
219 parametersΔρmax = 2.12 e Å3
9 restraintsΔρmin = −1.80 e Å3
xyzUiso*/Ueq
Cd10.32811 (14)0.19007 (13)0.58926 (9)0.0427 (4)
O10.1397 (12)0.1778 (11)0.7248 (7)0.043 (2)
O2−0.1244 (11)0.1608 (11)0.7803 (8)0.043 (2)
O1W0.5202 (9)0.0812 (8)0.7112 (7)0.045 (3)
O100.4501 (13)0.4197 (11)0.7028 (8)0.048 (3)
N1−0.1716 (14)0.7274 (13)0.5549 (9)0.037 (3)
N20.0418 (16)0.7573 (12)0.7100 (10)0.046 (3)
H20.12470.80190.76760.055*
N30.6296 (17)0.5826 (15)0.8605 (11)0.057 (4)
C1−0.0542 (18)0.8220 (17)0.6334 (13)0.044 (4)
H1−0.03820.92450.63620.053*
C2−0.1506 (16)0.5900 (15)0.5837 (12)0.035 (3)
C3−0.2450 (15)0.4482 (15)0.5278 (10)0.031 (3)
H3−0.33530.43700.46330.037*
C4−0.1988 (17)0.3261 (16)0.5722 (11)0.037 (3)
C5−0.0634 (17)0.3421 (14)0.6700 (11)0.033 (3)
C60.0295 (17)0.4860 (17)0.7241 (12)0.045 (4)
H60.12030.49990.78870.054*
C7−0.0192 (16)0.6032 (16)0.6778 (10)0.033 (3)
C8−0.0144 (18)0.2164 (15)0.7258 (12)0.039 (3)
C110.758 (3)0.606 (2)0.9664 (14)0.086 (6)
H11A0.76490.51230.99070.128*
H11B0.72500.67931.03060.128*
H11C0.86930.64070.94910.128*
C120.587 (2)0.713 (2)0.8183 (16)0.077 (6)
H12A0.56130.68680.73130.116*
H12B0.68350.79070.84450.116*
H12C0.48590.74770.85060.116*
C100.560 (2)0.4477 (19)0.7957 (13)0.054 (4)
H100.59750.36550.82260.065*
O3W0.7681 (13)0.2252 (9)1.0089 (11)0.127 (6)
H5W0.84650.21240.96500.190*
H6W0.69980.14460.98910.190*
O2W0.2935 (7)0.0032 (12)0.8739 (9)0.080 (4)
H3W0.39060.02070.85220.120*
H4W0.22730.05100.83640.120*
C9−0.2912 (17)0.1756 (17)0.5120 (11)0.036 (3)
O3−0.2155 (12)0.0562 (10)0.5048 (7)0.041 (2)
O4−0.4532 (9)0.1698 (8)0.4625 (7)0.043 (2)
H1W0.62790.10810.73150.065*
H2W0.4982−0.00840.67110.065*
U11U22U33U12U13U23
Cd10.0451 (7)0.0367 (7)0.0457 (6)−0.0036 (5)0.0070 (4)0.0115 (5)
O10.040 (6)0.042 (6)0.043 (5)−0.015 (5)0.005 (4)0.013 (4)
O20.033 (5)0.041 (6)0.059 (6)−0.002 (5)0.007 (4)0.024 (5)
O1W0.040 (5)0.038 (6)0.049 (5)−0.017 (5)0.006 (4)0.004 (5)
O100.054 (6)0.044 (7)0.039 (5)−0.003 (5)−0.005 (5)0.006 (5)
N10.035 (6)0.030 (7)0.042 (6)0.000 (6)0.000 (5)0.006 (5)
N20.056 (8)0.023 (7)0.053 (7)−0.007 (6)0.011 (6)0.002 (6)
N30.062 (9)0.034 (8)0.064 (8)0.003 (7)−0.009 (7)0.004 (7)
C10.048 (9)0.035 (9)0.064 (9)0.014 (7)0.021 (8)0.031 (8)
C20.030 (7)0.029 (8)0.057 (8)0.011 (6)0.020 (6)0.020 (7)
C30.025 (6)0.043 (9)0.023 (6)−0.010 (6)0.001 (5)0.010 (6)
C40.035 (8)0.040 (9)0.034 (7)−0.009 (7)0.003 (6)0.009 (6)
C50.045 (8)0.022 (7)0.033 (7)0.002 (6)0.006 (6)0.008 (6)
C60.032 (8)0.055 (10)0.043 (8)−0.006 (7)−0.007 (6)0.016 (7)
C70.029 (7)0.047 (9)0.029 (7)0.016 (7)0.003 (5)0.016 (6)
C80.041 (9)0.027 (8)0.043 (8)−0.011 (7)0.010 (6)−0.002 (6)
C110.105 (16)0.080 (15)0.052 (10)0.008 (12)−0.028 (10)0.001 (10)
C120.083 (14)0.063 (14)0.078 (12)0.011 (11)0.036 (10)−0.013 (10)
C100.065 (11)0.049 (11)0.049 (9)0.012 (9)0.009 (8)0.009 (8)
O3W0.171 (17)0.126 (15)0.085 (10)−0.006 (12)0.049 (10)0.020 (10)
O2W0.075 (8)0.090 (10)0.088 (8)0.009 (7)0.027 (7)0.041 (8)
C90.037 (8)0.044 (9)0.030 (7)0.006 (7)0.008 (6)0.015 (6)
O30.056 (6)0.028 (6)0.039 (5)0.000 (5)0.011 (4)0.005 (4)
O40.044 (6)0.037 (6)0.041 (5)−0.009 (5)0.008 (4)−0.001 (4)
Cd1—N1i2.226 (11)C3—C41.382 (19)
Cd1—O102.266 (9)C3—H30.9300
Cd1—O12.287 (8)C4—C51.404 (18)
Cd1—O3ii2.314 (9)C4—C91.472 (18)
Cd1—O1W2.344 (9)C5—C61.414 (18)
Cd1—O4iii2.373 (7)C5—C81.489 (19)
O1—C81.278 (16)C6—C71.359 (19)
O2—C81.261 (14)C6—H60.9300
O1W—H1W0.8380C11—H11A0.9600
O1W—H2W0.8382C11—H11B0.9600
O10—C101.236 (17)C11—H11C0.9600
N1—C11.301 (17)C12—H12A0.9600
N1—C21.388 (17)C12—H12B0.9600
N2—C11.346 (17)C12—H12C0.9600
N2—C71.400 (17)C10—H100.9300
N2—H20.8600O3W—H5W0.8411
N3—C101.320 (19)O3W—H6W0.8398
N3—C111.426 (19)O2W—H3W0.8389
N3—C121.43 (2)O2W—H4W0.8393
C1—H10.9300C9—O31.279 (16)
C2—C71.359 (18)C9—O41.302 (14)
C2—C31.407 (17)
N1i—Cd1—O1096.6 (4)C3—C4—C9118.6 (11)
N1i—Cd1—O1103.1 (4)C5—C4—C9119.8 (13)
O10—Cd1—O189.6 (3)C4—C5—C6119.5 (13)
N1i—Cd1—O3ii90.6 (4)C4—C5—C8123.9 (12)
O10—Cd1—O3ii172.6 (3)C6—C5—C8116.6 (12)
O1—Cd1—O3ii86.9 (3)C7—C6—C5117.3 (12)
N1i—Cd1—O1W169.1 (3)C7—C6—H6121.3
O10—Cd1—O1W88.5 (3)C5—C6—H6121.3
O1—Cd1—O1W86.5 (3)C6—C7—C2124.0 (13)
O3ii—Cd1—O1W84.8 (3)C6—C7—N2132.0 (12)
N1i—Cd1—O4iii85.9 (3)C2—C7—N2103.9 (12)
O10—Cd1—O4iii93.7 (3)O2—C8—O1123.0 (14)
O1—Cd1—O4iii170.0 (3)O2—C8—C5117.4 (13)
O3ii—Cd1—O4iii88.7 (3)O1—C8—C5119.3 (11)
O1W—Cd1—O4iii84.1 (3)N3—C11—H11A109.5
C8—O1—Cd1130.4 (8)N3—C11—H11B109.5
H1W—O1W—H2W112.2H11A—C11—H11B109.5
C10—O10—Cd1127.5 (11)N3—C11—H11C109.5
C1—N1—C2103.9 (12)H11A—C11—H11C109.5
C1—N1—Cd1i118.8 (10)H11B—C11—H11C109.5
C2—N1—Cd1i137.1 (9)N3—C12—H12A109.5
C1—N2—C7106.8 (11)N3—C12—H12B109.5
C1—N2—H2126.6H12A—C12—H12B109.5
C7—N2—H2126.6N3—C12—H12C109.5
C10—N3—C11123.2 (15)H12A—C12—H12C109.5
C10—N3—C12119.1 (14)H12B—C12—H12C109.5
C11—N3—C12117.5 (15)O10—C10—N3126.5 (16)
N1—C1—N2113.5 (13)O10—C10—H10116.7
N1—C1—H1123.2N3—C10—H10116.7
N2—C1—H1123.2H5W—O3W—H6W105.9
C7—C2—N1111.8 (12)H3W—O2W—H4W103.7
C7—C2—C3120.0 (13)O3—C9—O4121.1 (12)
N1—C2—C3128.2 (13)O3—C9—C4122.1 (12)
C4—C3—C2117.7 (11)O4—C9—C4116.8 (13)
C4—C3—H3121.2C9—O3—Cd1ii128.7 (8)
C2—C3—H3121.2C9—O4—Cd1iv118.5 (7)
C3—C4—C5121.6 (12)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···O2iii0.841.922.757 (11)177
O1W—H2W···O4ii0.841.852.649 (12)159
O2W—H3W···O1W0.842.162.888 (9)145
O2W—H4W···O10.842.002.811 (11)162
O3W—H5W···O2iii0.842.112.810 (12)140
O3W—H6W···O2Wv0.842.292.766 (14)117
N2—H2···O2Wvi0.862.182.970 (16)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W⋯O2i0.841.922.757 (11)177
O1W—H2W⋯O4ii0.841.852.649 (12)159
O2W—H3W⋯O1W0.842.162.888 (9)145
O2W—H4W⋯O10.842.002.811 (11)162
O3W—H5W⋯O2i0.842.112.810 (12)140
O3W—H6W⋯O2Wiii0.842.292.766 (14)117
N2—H2⋯O2Wiv0.862.182.970 (16)152

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Penta-aqua-(1H-benzimidazole-5,6-di-carboxyl-ato-κN)cobalt(II) penta-hydrate.

Authors:  Wen-Dong Song; Hao Wang; Shi-Jie Li; Pei-Wen Qin; Shi-Wei Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29

3.  catena-Poly[[diaqua-(1,10-phenanthroline-κN,N')nickel(II)]-μ-1H-benzimidazole-5,6-dicarboxyl-ato-κN:O].

Authors:  Wen-Dong Song; Hao Wang; Shi-Wei Hu; Pei-Wen Qin; Shi-Jie Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29

4.  Tetra-aqua-bis-(1H-benzimidazole-5,6-di-carboxyl-ato-κN)cobalt(II) dimethyl-formamide disolvate dihydrate.

Authors:  Hao Wang; Wen-Dong Song; Shi-Jie Li; Dong-Liang Miao; Jin Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-23

5.  Penta-aqua-(1H-benzimidazole-5,6-dicarboxyl-ato-κN)nickel(II) penta-hydrate.

Authors:  Wen-Dong Song; Hao Wang; Pei-Wen Qin; Shi-Jie Li; Shi-Wei Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-23
  5 in total

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