| Literature DB >> 21579672 |
Hao Wang, Shi-Jie Li, Wen-Dong Song, Xiao-Fei Li, Dong-Liang Miao.
Abstract
In the title compound, {[Cd(C(9)H(4)N(2)O(4))(C(3)H(7)NO)(H(2)O)]·2H(2)O}(n), the Cd(II) atom is coordinated by one N atom and three O atoms from four different 1H-benzimidazole-5,6-dicarboxyl-ate (Hbidc) ligands, one O atom from one dimethyl-formamide ligand, and one O atom from a water mol-ecule in a distorted octa-hedral geometry. The Hbidc ligands connect the Cd atoms into a two-dimensional network parallel to (001). N-H⋯O and O-H⋯O hydrogen bonds involving the water molecules are observed in the crystal structure.Entities:
Year: 2010 PMID: 21579672 PMCID: PMC2979735 DOI: 10.1107/S1600536810003065
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cd(C9H4N2O4)(C3H7NO)(H2O)]·2H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3441 reflections | |
| θ = 3.3–27.4° | |
| µ = 1.44 mm−1 | |
| α = 102.76 (3)° | |
| β = 97.70 (3)° | Block, colorless |
| γ = 94.96 (3)° | 0.29 × 0.25 × 0.21 mm |
| Rigaku/MSC Mercury CCD diffractometer | 2800 independent reflections |
| Radiation source: fine-focus sealed tube | 1539 reflections with |
| graphite | |
| ω scans | θmax = 25.2°, θmin = 3.3° |
| Absorption correction: multi-scan (REQAB; Jacobson, 1998) | |
| 6197 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2800 reflections | (Δ/σ)max < 0.001 |
| 219 parameters | Δρmax = 2.12 e Å−3 |
| 9 restraints | Δρmin = −1.80 e Å−3 |
| Cd1 | 0.32811 (14) | 0.19007 (13) | 0.58926 (9) | 0.0427 (4) | |
| O1 | 0.1397 (12) | 0.1778 (11) | 0.7248 (7) | 0.043 (2) | |
| O2 | −0.1244 (11) | 0.1608 (11) | 0.7803 (8) | 0.043 (2) | |
| O1W | 0.5202 (9) | 0.0812 (8) | 0.7112 (7) | 0.045 (3) | |
| O10 | 0.4501 (13) | 0.4197 (11) | 0.7028 (8) | 0.048 (3) | |
| N1 | −0.1716 (14) | 0.7274 (13) | 0.5549 (9) | 0.037 (3) | |
| N2 | 0.0418 (16) | 0.7573 (12) | 0.7100 (10) | 0.046 (3) | |
| H2 | 0.1247 | 0.8019 | 0.7676 | 0.055* | |
| N3 | 0.6296 (17) | 0.5826 (15) | 0.8605 (11) | 0.057 (4) | |
| C1 | −0.0542 (18) | 0.8220 (17) | 0.6334 (13) | 0.044 (4) | |
| H1 | −0.0382 | 0.9245 | 0.6362 | 0.053* | |
| C2 | −0.1506 (16) | 0.5900 (15) | 0.5837 (12) | 0.035 (3) | |
| C3 | −0.2450 (15) | 0.4482 (15) | 0.5278 (10) | 0.031 (3) | |
| H3 | −0.3353 | 0.4370 | 0.4633 | 0.037* | |
| C4 | −0.1988 (17) | 0.3261 (16) | 0.5722 (11) | 0.037 (3) | |
| C5 | −0.0634 (17) | 0.3421 (14) | 0.6700 (11) | 0.033 (3) | |
| C6 | 0.0295 (17) | 0.4860 (17) | 0.7241 (12) | 0.045 (4) | |
| H6 | 0.1203 | 0.4999 | 0.7887 | 0.054* | |
| C7 | −0.0192 (16) | 0.6032 (16) | 0.6778 (10) | 0.033 (3) | |
| C8 | −0.0144 (18) | 0.2164 (15) | 0.7258 (12) | 0.039 (3) | |
| C11 | 0.758 (3) | 0.606 (2) | 0.9664 (14) | 0.086 (6) | |
| H11A | 0.7649 | 0.5123 | 0.9907 | 0.128* | |
| H11B | 0.7250 | 0.6793 | 1.0306 | 0.128* | |
| H11C | 0.8693 | 0.6407 | 0.9491 | 0.128* | |
| C12 | 0.587 (2) | 0.713 (2) | 0.8183 (16) | 0.077 (6) | |
| H12A | 0.5613 | 0.6868 | 0.7313 | 0.116* | |
| H12B | 0.6835 | 0.7907 | 0.8445 | 0.116* | |
| H12C | 0.4859 | 0.7477 | 0.8506 | 0.116* | |
| C10 | 0.560 (2) | 0.4477 (19) | 0.7957 (13) | 0.054 (4) | |
| H10 | 0.5975 | 0.3655 | 0.8226 | 0.065* | |
| O3W | 0.7681 (13) | 0.2252 (9) | 1.0089 (11) | 0.127 (6) | |
| H5W | 0.8465 | 0.2124 | 0.9650 | 0.190* | |
| H6W | 0.6998 | 0.1446 | 0.9891 | 0.190* | |
| O2W | 0.2935 (7) | 0.0032 (12) | 0.8739 (9) | 0.080 (4) | |
| H3W | 0.3906 | 0.0207 | 0.8522 | 0.120* | |
| H4W | 0.2273 | 0.0510 | 0.8364 | 0.120* | |
| C9 | −0.2912 (17) | 0.1756 (17) | 0.5120 (11) | 0.036 (3) | |
| O3 | −0.2155 (12) | 0.0562 (10) | 0.5048 (7) | 0.041 (2) | |
| O4 | −0.4532 (9) | 0.1698 (8) | 0.4625 (7) | 0.043 (2) | |
| H1W | 0.6279 | 0.1081 | 0.7315 | 0.065* | |
| H2W | 0.4982 | −0.0084 | 0.6711 | 0.065* |
| Cd1 | 0.0451 (7) | 0.0367 (7) | 0.0457 (6) | −0.0036 (5) | 0.0070 (4) | 0.0115 (5) |
| O1 | 0.040 (6) | 0.042 (6) | 0.043 (5) | −0.015 (5) | 0.005 (4) | 0.013 (4) |
| O2 | 0.033 (5) | 0.041 (6) | 0.059 (6) | −0.002 (5) | 0.007 (4) | 0.024 (5) |
| O1W | 0.040 (5) | 0.038 (6) | 0.049 (5) | −0.017 (5) | 0.006 (4) | 0.004 (5) |
| O10 | 0.054 (6) | 0.044 (7) | 0.039 (5) | −0.003 (5) | −0.005 (5) | 0.006 (5) |
| N1 | 0.035 (6) | 0.030 (7) | 0.042 (6) | 0.000 (6) | 0.000 (5) | 0.006 (5) |
| N2 | 0.056 (8) | 0.023 (7) | 0.053 (7) | −0.007 (6) | 0.011 (6) | 0.002 (6) |
| N3 | 0.062 (9) | 0.034 (8) | 0.064 (8) | 0.003 (7) | −0.009 (7) | 0.004 (7) |
| C1 | 0.048 (9) | 0.035 (9) | 0.064 (9) | 0.014 (7) | 0.021 (8) | 0.031 (8) |
| C2 | 0.030 (7) | 0.029 (8) | 0.057 (8) | 0.011 (6) | 0.020 (6) | 0.020 (7) |
| C3 | 0.025 (6) | 0.043 (9) | 0.023 (6) | −0.010 (6) | 0.001 (5) | 0.010 (6) |
| C4 | 0.035 (8) | 0.040 (9) | 0.034 (7) | −0.009 (7) | 0.003 (6) | 0.009 (6) |
| C5 | 0.045 (8) | 0.022 (7) | 0.033 (7) | 0.002 (6) | 0.006 (6) | 0.008 (6) |
| C6 | 0.032 (8) | 0.055 (10) | 0.043 (8) | −0.006 (7) | −0.007 (6) | 0.016 (7) |
| C7 | 0.029 (7) | 0.047 (9) | 0.029 (7) | 0.016 (7) | 0.003 (5) | 0.016 (6) |
| C8 | 0.041 (9) | 0.027 (8) | 0.043 (8) | −0.011 (7) | 0.010 (6) | −0.002 (6) |
| C11 | 0.105 (16) | 0.080 (15) | 0.052 (10) | 0.008 (12) | −0.028 (10) | 0.001 (10) |
| C12 | 0.083 (14) | 0.063 (14) | 0.078 (12) | 0.011 (11) | 0.036 (10) | −0.013 (10) |
| C10 | 0.065 (11) | 0.049 (11) | 0.049 (9) | 0.012 (9) | 0.009 (8) | 0.009 (8) |
| O3W | 0.171 (17) | 0.126 (15) | 0.085 (10) | −0.006 (12) | 0.049 (10) | 0.020 (10) |
| O2W | 0.075 (8) | 0.090 (10) | 0.088 (8) | 0.009 (7) | 0.027 (7) | 0.041 (8) |
| C9 | 0.037 (8) | 0.044 (9) | 0.030 (7) | 0.006 (7) | 0.008 (6) | 0.015 (6) |
| O3 | 0.056 (6) | 0.028 (6) | 0.039 (5) | 0.000 (5) | 0.011 (4) | 0.005 (4) |
| O4 | 0.044 (6) | 0.037 (6) | 0.041 (5) | −0.009 (5) | 0.008 (4) | −0.001 (4) |
| Cd1—N1i | 2.226 (11) | C3—C4 | 1.382 (19) |
| Cd1—O10 | 2.266 (9) | C3—H3 | 0.9300 |
| Cd1—O1 | 2.287 (8) | C4—C5 | 1.404 (18) |
| Cd1—O3ii | 2.314 (9) | C4—C9 | 1.472 (18) |
| Cd1—O1W | 2.344 (9) | C5—C6 | 1.414 (18) |
| Cd1—O4iii | 2.373 (7) | C5—C8 | 1.489 (19) |
| O1—C8 | 1.278 (16) | C6—C7 | 1.359 (19) |
| O2—C8 | 1.261 (14) | C6—H6 | 0.9300 |
| O1W—H1W | 0.8380 | C11—H11A | 0.9600 |
| O1W—H2W | 0.8382 | C11—H11B | 0.9600 |
| O10—C10 | 1.236 (17) | C11—H11C | 0.9600 |
| N1—C1 | 1.301 (17) | C12—H12A | 0.9600 |
| N1—C2 | 1.388 (17) | C12—H12B | 0.9600 |
| N2—C1 | 1.346 (17) | C12—H12C | 0.9600 |
| N2—C7 | 1.400 (17) | C10—H10 | 0.9300 |
| N2—H2 | 0.8600 | O3W—H5W | 0.8411 |
| N3—C10 | 1.320 (19) | O3W—H6W | 0.8398 |
| N3—C11 | 1.426 (19) | O2W—H3W | 0.8389 |
| N3—C12 | 1.43 (2) | O2W—H4W | 0.8393 |
| C1—H1 | 0.9300 | C9—O3 | 1.279 (16) |
| C2—C7 | 1.359 (18) | C9—O4 | 1.302 (14) |
| C2—C3 | 1.407 (17) | ||
| N1i—Cd1—O10 | 96.6 (4) | C3—C4—C9 | 118.6 (11) |
| N1i—Cd1—O1 | 103.1 (4) | C5—C4—C9 | 119.8 (13) |
| O10—Cd1—O1 | 89.6 (3) | C4—C5—C6 | 119.5 (13) |
| N1i—Cd1—O3ii | 90.6 (4) | C4—C5—C8 | 123.9 (12) |
| O10—Cd1—O3ii | 172.6 (3) | C6—C5—C8 | 116.6 (12) |
| O1—Cd1—O3ii | 86.9 (3) | C7—C6—C5 | 117.3 (12) |
| N1i—Cd1—O1W | 169.1 (3) | C7—C6—H6 | 121.3 |
| O10—Cd1—O1W | 88.5 (3) | C5—C6—H6 | 121.3 |
| O1—Cd1—O1W | 86.5 (3) | C6—C7—C2 | 124.0 (13) |
| O3ii—Cd1—O1W | 84.8 (3) | C6—C7—N2 | 132.0 (12) |
| N1i—Cd1—O4iii | 85.9 (3) | C2—C7—N2 | 103.9 (12) |
| O10—Cd1—O4iii | 93.7 (3) | O2—C8—O1 | 123.0 (14) |
| O1—Cd1—O4iii | 170.0 (3) | O2—C8—C5 | 117.4 (13) |
| O3ii—Cd1—O4iii | 88.7 (3) | O1—C8—C5 | 119.3 (11) |
| O1W—Cd1—O4iii | 84.1 (3) | N3—C11—H11A | 109.5 |
| C8—O1—Cd1 | 130.4 (8) | N3—C11—H11B | 109.5 |
| H1W—O1W—H2W | 112.2 | H11A—C11—H11B | 109.5 |
| C10—O10—Cd1 | 127.5 (11) | N3—C11—H11C | 109.5 |
| C1—N1—C2 | 103.9 (12) | H11A—C11—H11C | 109.5 |
| C1—N1—Cd1i | 118.8 (10) | H11B—C11—H11C | 109.5 |
| C2—N1—Cd1i | 137.1 (9) | N3—C12—H12A | 109.5 |
| C1—N2—C7 | 106.8 (11) | N3—C12—H12B | 109.5 |
| C1—N2—H2 | 126.6 | H12A—C12—H12B | 109.5 |
| C7—N2—H2 | 126.6 | N3—C12—H12C | 109.5 |
| C10—N3—C11 | 123.2 (15) | H12A—C12—H12C | 109.5 |
| C10—N3—C12 | 119.1 (14) | H12B—C12—H12C | 109.5 |
| C11—N3—C12 | 117.5 (15) | O10—C10—N3 | 126.5 (16) |
| N1—C1—N2 | 113.5 (13) | O10—C10—H10 | 116.7 |
| N1—C1—H1 | 123.2 | N3—C10—H10 | 116.7 |
| N2—C1—H1 | 123.2 | H5W—O3W—H6W | 105.9 |
| C7—C2—N1 | 111.8 (12) | H3W—O2W—H4W | 103.7 |
| C7—C2—C3 | 120.0 (13) | O3—C9—O4 | 121.1 (12) |
| N1—C2—C3 | 128.2 (13) | O3—C9—C4 | 122.1 (12) |
| C4—C3—C2 | 117.7 (11) | O4—C9—C4 | 116.8 (13) |
| C4—C3—H3 | 121.2 | C9—O3—Cd1ii | 128.7 (8) |
| C2—C3—H3 | 121.2 | C9—O4—Cd1iv | 118.5 (7) |
| C3—C4—C5 | 121.6 (12) |
| H··· | ||||
| O1W—H1W···O2iii | 0.84 | 1.92 | 2.757 (11) | 177 |
| O1W—H2W···O4ii | 0.84 | 1.85 | 2.649 (12) | 159 |
| O2W—H3W···O1W | 0.84 | 2.16 | 2.888 (9) | 145 |
| O2W—H4W···O1 | 0.84 | 2.00 | 2.811 (11) | 162 |
| O3W—H5W···O2iii | 0.84 | 2.11 | 2.810 (12) | 140 |
| O3W—H6W···O2Wv | 0.84 | 2.29 | 2.766 (14) | 117 |
| N2—H2···O2Wvi | 0.86 | 2.18 | 2.970 (16) | 152 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.84 | 1.92 | 2.757 (11) | 177 |
| O1 | 0.84 | 1.85 | 2.649 (12) | 159 |
| O2 | 0.84 | 2.16 | 2.888 (9) | 145 |
| O2 | 0.84 | 2.00 | 2.811 (11) | 162 |
| O3 | 0.84 | 2.11 | 2.810 (12) | 140 |
| O3 | 0.84 | 2.29 | 2.766 (14) | 117 |
| N2—H2⋯O2 | 0.86 | 2.18 | 2.970 (16) | 152 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .