Literature DB >> 21579629

Poly[diaqua-(μ(3)-1H-benzimidazole-5,6-dicarboxyl-ato-κN:O,O:O)magnesium(II)].

Hao Wang, Xiao-Fei Li, Wen-Dong Song, Xiao-Tian Ma, Juan-Hua Liu.   

Abstract

In the title complex, [Mg(C(9)n class="Species">H(4)N(2)O(4))(H(2)O)(2)](n), the Mg(II) atom is six-coordinated by one N and three O atoms from three different 1H-benzimidazole-5,6-dicarboxyl-ate ligands and two O atoms from two water mol-ecules, forming a slightly distorted octa-hedral geometry. The ligand links the Mg(II) centres into a three-dimensional network. Extensive N-H⋯O and O-H⋯O hydrogen bonds exist between the ligands and water mol-ecules, stabilizing the crystal structure.

Entities:  

Year:  2010        PMID: 21579629      PMCID: PMC2979947          DOI: 10.1107/S1600536810001029

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures of 1H-benzimidazole-5,6-dicarboxyl­ate complexes, see: Song, Wang, Hu et al. (2009 ▶); Song, Wang, Li et al. (2009 ▶); Song, Wang, Qin et al. (2009 ▶); Wang et al. (2009 ▶).

Experimental

Crystal data

[Mg(C9n class="Species">H4N2O4)(H2O)2] M = 264.48 Monoclinic, a = 7.4793 (15) Å b = 18.958 (4) Å c = 7.3132 (15) Å β = 99.38 (3)° V = 1023.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 293 K 0.30 × 0.25 × 0.21 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.943, T max = 0.960 4611 measured reflections 1143 independent reflections 1096 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.090 S = 1.06 1143 reflections 163 parameters 2 restraints H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrystalStructure (Rigaku/MSC, 2002 ▶); cell refinement: CrystalStructure; data reduction: CrystalStructure; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810001029/hy2269sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810001029/hy2269Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mg(C9H4N2O4)(H2O)2]F(000) = 544
Mr = 264.48Dx = 1.717 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 4114 reflections
a = 7.4793 (15) Åθ = 3.6–27.5°
b = 18.958 (4) ŵ = 0.20 mm1
c = 7.3132 (15) ÅT = 293 K
β = 99.38 (3)°Block, colourless
V = 1023.1 (4) Å30.30 × 0.25 × 0.21 mm
Z = 4
Rigaku/MSC Mercury CCD diffractometer1143 independent reflections
Radiation source: fine-focus sealed tube1096 reflections with I > 2σ(I)
graphiteRint = 0.031
ω scansθmax = 27.5°, θmin = 3.6°
Absorption correction: multi-scan (REQAB; Jacobson, 1998)h = −9→9
Tmin = 0.943, Tmax = 0.960k = −24→24
4611 measured reflectionsl = −8→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.04P)2 + 2P] where P = (Fo2 + 2Fc2)/3
1143 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.38 e Å3
2 restraintsΔρmin = −0.25 e Å3
xyzUiso*/Ueq
Mg10.27807 (16)0.68928 (5)0.63241 (16)0.0172 (3)
O10.4349 (4)0.37147 (14)0.9888 (4)0.0234 (5)
O20.5047 (4)0.37926 (16)0.7087 (4)0.0317 (7)
O30.1320 (4)0.28489 (12)0.8699 (4)0.0237 (6)
O4−0.0733 (4)0.28304 (12)0.6132 (3)0.0236 (6)
N10.0678 (5)0.61142 (15)0.6633 (5)0.0214 (6)
N3−0.2035 (5)0.56134 (16)0.6122 (5)0.0271 (7)
H3−0.31960.55770.58740.033*
C10.0380 (5)0.31481 (16)0.7326 (5)0.0173 (6)
C20.0549 (5)0.39389 (16)0.7123 (5)0.0182 (7)
C3−0.1002 (5)0.43318 (18)0.6560 (5)0.0223 (7)
H2−0.21270.41160.62400.027*
C4−0.0816 (5)0.50629 (18)0.6490 (5)0.0206 (7)
C50.0876 (5)0.53907 (17)0.6828 (5)0.0184 (7)
C60.2438 (5)0.49930 (18)0.7332 (5)0.0185 (7)
H10.35740.52060.75310.022*
C70.2259 (4)0.42738 (16)0.7529 (4)0.0154 (6)
C80.3985 (5)0.38839 (17)0.8204 (5)0.0173 (7)
C9−0.1073 (6)0.62155 (18)0.6224 (6)0.0262 (8)
H9−0.15990.66590.60230.031*
O1W0.4663 (4)0.65596 (14)0.8537 (4)0.0289 (6)
H1W0.45730.64080.95980.043*
H2W0.53550.69110.86010.043*
O2W0.1388 (5)0.75021 (15)0.7982 (5)0.0374 (8)
H3W0.06600.73420.86390.056*
H4W0.11760.79270.77040.056*
U11U22U33U12U13U23
Mg10.0191 (6)0.0134 (4)0.0184 (5)−0.0004 (4)0.0009 (4)0.0004 (4)
O10.0186 (13)0.0310 (13)0.0202 (12)0.0004 (10)0.0019 (11)0.0074 (10)
O20.0247 (16)0.0462 (17)0.0253 (14)0.0133 (12)0.0075 (12)0.0005 (12)
O30.0274 (14)0.0165 (11)0.0235 (12)−0.0008 (10)−0.0074 (11)0.0006 (9)
O40.0281 (15)0.0195 (12)0.0203 (13)−0.0067 (10)−0.0045 (11)0.0014 (9)
N10.0215 (16)0.0167 (13)0.0265 (15)0.0018 (11)0.0058 (12)0.0039 (11)
N30.0147 (16)0.0249 (14)0.0400 (19)0.0032 (12)−0.0009 (14)0.0065 (13)
C10.0195 (17)0.0151 (13)0.0175 (16)−0.0016 (12)0.0043 (14)−0.0002 (11)
C20.0197 (18)0.0150 (14)0.0192 (16)−0.0024 (12)0.0008 (14)0.0015 (12)
C30.0184 (18)0.0204 (16)0.0274 (19)−0.0040 (13)0.0011 (15)0.0023 (13)
C40.0151 (19)0.0216 (16)0.0244 (18)0.0023 (12)0.0011 (14)0.0045 (13)
C50.0191 (17)0.0160 (14)0.0203 (16)−0.0019 (12)0.0035 (14)0.0016 (12)
C60.0129 (16)0.0198 (15)0.0224 (17)−0.0022 (11)0.0018 (14)0.0008 (12)
C70.0151 (16)0.0178 (14)0.0134 (14)0.0002 (12)0.0027 (13)−0.0002 (11)
C80.0154 (17)0.0154 (14)0.0204 (17)−0.0024 (11)0.0007 (14)−0.0011 (11)
C90.024 (2)0.0208 (16)0.034 (2)0.0068 (14)0.0050 (17)0.0067 (14)
O1W0.0340 (15)0.0271 (13)0.0225 (12)−0.0071 (11)−0.0043 (12)0.0052 (10)
O2W0.0486 (19)0.0219 (12)0.0476 (19)0.0063 (12)0.0251 (16)−0.0022 (12)
Mg1—N12.195 (3)C1—C21.514 (4)
Mg1—O1i2.051 (3)C2—C31.384 (5)
Mg1—O3i2.106 (3)C2—C71.416 (5)
Mg1—O4ii2.113 (3)C3—C41.395 (5)
Mg1—O1W2.063 (3)C3—H20.9300
Mg1—O2W2.074 (3)C4—C51.395 (5)
O1—C81.259 (4)C5—C61.388 (5)
O2—C81.241 (4)C6—C71.380 (5)
O3—C11.263 (4)C6—H10.9300
O4—C11.257 (4)C7—C81.499 (5)
N1—C91.310 (5)C9—H90.9300
N1—C51.384 (4)O1W—H1W0.8401
N3—C91.345 (5)O1W—H2W0.8400
N3—C41.383 (5)O2W—H3W0.8399
N3—H30.8600O2W—H4W0.8400
O1i—Mg1—O1W81.69 (12)C7—C2—C1120.7 (3)
O1i—Mg1—O2W174.71 (15)C2—C3—C4117.5 (3)
O1W—Mg1—O2W93.18 (14)C2—C3—H2121.2
O1i—Mg1—O3i85.34 (12)C4—C3—H2121.3
O1W—Mg1—O3i166.51 (13)N3—C4—C3133.6 (3)
O2W—Mg1—O3i99.68 (13)N3—C4—C5104.4 (3)
O1i—Mg1—O4ii95.02 (12)C3—C4—C5122.0 (3)
O1W—Mg1—O4ii90.61 (11)N1—C5—C6129.5 (3)
O2W—Mg1—O4ii83.68 (12)N1—C5—C4110.1 (3)
O3i—Mg1—O4ii86.80 (11)C6—C5—C4120.3 (3)
O1i—Mg1—N198.87 (12)C7—C6—C5118.2 (3)
O1W—Mg1—N197.00 (12)C7—C6—H1120.9
O2W—Mg1—N182.98 (13)C5—C6—H1120.9
O3i—Mg1—N188.65 (12)C6—C7—C2121.4 (3)
O4ii—Mg1—N1164.98 (12)C6—C7—C8115.4 (3)
C8—O1—Mg1iii126.4 (2)C2—C7—C8123.2 (3)
C1—O3—Mg1iii139.4 (2)O2—C8—O1123.3 (3)
C1—O4—Mg1iv130.8 (2)O2—C8—C7117.5 (3)
C9—N1—C5104.8 (3)O1—C8—C7119.0 (3)
C9—N1—Mg1125.8 (2)N1—C9—N3113.2 (3)
C5—N1—Mg1127.6 (3)N1—C9—H9123.4
C9—N3—C4107.4 (3)N3—C9—H9123.4
C9—N3—H3126.3Mg1—O1W—H1W133.0
C4—N3—H3126.3Mg1—O1W—H2W97.9
O4—C1—O3123.8 (3)H1W—O1W—H2W111.1
O4—C1—C2117.6 (3)Mg1—O2W—H3W124.6
O3—C1—C2118.6 (3)Mg1—O2W—H4W119.1
C3—C2—C7120.4 (3)H3W—O2W—H4W111.8
C3—C2—C1118.9 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3···O1v0.862.292.992 (4)138
O1W—H1W···O2iii0.841.842.651 (4)163
O1W—H2W···O3ii0.841.922.734 (4)164
O2W—H3W···O4iii0.842.273.068 (4)160
O2W—H4W···O2vi0.841.872.685 (4)164
Table 1

Selected bond lengths (Å)

Mg1—N12.195 (3)
Mg1—O1i2.051 (3)
Mg1—O3i2.106 (3)
Mg1—O4ii2.113 (3)
Mg1—O1W2.063 (3)
Mg1—O2W2.074 (3)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯O1iii0.862.292.992 (4)138
O1W—H1W⋯O2iv0.841.842.651 (4)163
O1W—H2W⋯O3ii0.841.922.734 (4)164
O2W—H3W⋯O4iv0.842.273.068 (4)160
O2W—H4W⋯O2v0.841.872.685 (4)164

Symmetry codes: (ii) ; (iii) ; (iv) ; (v) .

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