Literature DB >> 21577919

6-Benzyl-3,4-dimeth-oxy-10-methyl-pyrido[2',1':2,3]imidazo[4,5-c]isoquinolin-5(6H)-one.

Kathrin Meindl, Daniel Stern, Fadime Mert-Balci, Uwe Beifuss.   

Abstract

Pyrido[2',1':2,3]imidazo[4,5-c]isoquinolin-5(6H)-ones such as the title compound, C(24)H(21)N(3)O(3), can be obtained in a few minutes in a microwave-assisted three-component reaction from 2-amino-pyridines, isocyanides and 2-carboxy-benz-aldehydes. In the title compound, the pyrido[2',1':2,3]imidazo[4,5-c]isoquinolin-5(6H)-one ring system is almost planar (mean deviation 0.068 Å). The dihedral angle between the benzyl ring and the pyrido[2',1':2,3]imidazo[4,5-c]isoquinolin-5(6H)-one ring system is 78.2°. The crystal structure is stabilized by inter-molecular C-H⋯O and C-H⋯N hydrogen bonds.

Entities:  

Year:  2009        PMID: 21577919      PMCID: PMC2970274          DOI: 10.1107/S1600536809035806

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of fused imidazo[1,2-a]heterocycles, see: Almirante et al. (1965 ▶); Gueiffier et al. (1998 ▶); Sanfilippo et al. (1988 ▶); Varma & Kumar (1999 ▶). This heterocyclic structure element is present in drugs such as alpidem (anxiolytic), zolpidem (hypnotic) and zolimidine (anti­ulcer), see: Meng et al. (2007 ▶). For the synthesis of pyrido[2′,1′:2,3]imidazo[4,5-c]isoquinolin-5(6H)-ones by the microwave-assisted three-component reaction of 2-amino­pyridines, isocyanides and 2-carboxy­benzaldehydes, see: Mert-Balci et al. (2008 ▶).

Experimental

Crystal data

C24H21N3O3 M = 399.44 Monoclinic, a = 8.3650 (17) Å b = 7.0500 (14) Å c = 15.983 (3) Å β = 92.27 (3)° V = 941.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.35 × 0.20 × 0.20 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2006 ▶) T min = 0.965, T max = 0.981 16260 measured reflections 4479 independent reflections 4383 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.080 S = 1.06 4479 reflections 274 parameters 1 restraint H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.20 e Å−3 Absolute structure: Flack (1983 ▶), 1895 Friedel pairs Flack parameter: 0.2 (6) Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809035806/lx2108sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809035806/lx2108Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H21N3O3F(000) = 420
Mr = 399.44Dx = 1.408 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 6111 reflections
a = 8.3650 (17) Åθ = 2.7–28.4°
b = 7.0500 (14) ŵ = 0.10 mm1
c = 15.983 (3) ÅT = 100 K
β = 92.27 (3)°Block, orange
V = 941.8 (3) Å30.35 × 0.20 × 0.20 mm
Z = 2
Bruker APEXII diffractometer4479 independent reflections
Radiation source: fine-focus sealed tube4383 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 8.3333 pixels mm-1θmax = 28.5°, θmin = 2.4°
ω scansh = −10→11
Absorption correction: multi-scan (SADABS; Bruker, 2006)k = −9→9
Tmin = 0.965, Tmax = 0.981l = −21→21
16260 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030H-atom parameters constrained
wR(F2) = 0.080w = 1/[σ2(Fo2) + (0.0521P)2 + 0.1311P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
4479 reflectionsΔρmax = 0.23 e Å3
274 parametersΔρmin = −0.20 e Å3
1 restraintAbsolute structure: Flack (1983)
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.2 (6)
Experimental. Intensities were measured with a Bruker APEX II area detector
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.10209 (10)−0.19983 (13)0.60571 (5)0.02146 (17)
O20.00203 (10)−0.51480 (13)0.68116 (5)0.02068 (17)
O3−0.16121 (10)−0.64479 (12)0.80584 (5)0.02256 (18)
N10.16148 (11)0.18429 (14)0.89977 (6)0.0188 (2)
N20.28372 (11)0.29948 (15)0.78537 (6)0.01719 (18)
N30.19436 (11)0.04583 (14)0.68445 (5)0.01692 (19)
C10.11724 (12)−0.12940 (17)0.67556 (7)0.0167 (2)
C20.05157 (13)−0.21455 (17)0.75221 (6)0.0163 (2)
C3−0.01653 (12)−0.39733 (17)0.74838 (6)0.0174 (2)
C4−0.09563 (13)−0.46934 (17)0.81773 (7)0.0187 (2)
C5−0.10004 (13)−0.36386 (18)0.89150 (7)0.0196 (2)
H5A−0.1545−0.41240.93790.024*
C6−0.02551 (13)−0.18914 (17)0.89725 (7)0.0186 (2)
H6A−0.0260−0.12060.94840.022*
C70.05077 (12)−0.11180 (17)0.82860 (7)0.0163 (2)
C80.13440 (12)0.06634 (16)0.83200 (6)0.0167 (2)
C90.24986 (13)0.32389 (17)0.87093 (7)0.0181 (2)
C100.31098 (13)0.48761 (18)0.91234 (7)0.0197 (2)
H10A0.28670.50930.96910.024*
C110.40443 (13)0.61520 (17)0.87209 (7)0.0210 (2)
C120.44105 (14)0.57844 (18)0.78680 (8)0.0221 (2)
H12A0.50870.66380.75880.027*
C130.38171 (14)0.42520 (17)0.74504 (7)0.0202 (2)
H13A0.40720.40410.68840.024*
C140.20519 (13)0.13373 (16)0.76184 (7)0.0169 (2)
C150.25250 (13)0.13309 (17)0.60803 (6)0.0176 (2)
H15A0.23730.27210.61120.021*
H15B0.18740.08600.55930.021*
C160.42737 (13)0.09168 (16)0.59426 (7)0.0168 (2)
C170.48763 (14)0.12660 (17)0.51524 (7)0.0199 (2)
H17A0.41870.17380.47140.024*
C180.64788 (14)0.09259 (18)0.50067 (8)0.0245 (2)
H18A0.68790.11750.44700.029*
C190.74952 (14)0.02273 (19)0.56382 (9)0.0269 (3)
H19A0.8587−0.00140.55340.032*
C200.69096 (15)−0.0119 (2)0.64258 (9)0.0269 (3)
H20A0.7605−0.05880.68630.032*
C210.53069 (14)0.02215 (17)0.65755 (7)0.0216 (2)
H21A0.4914−0.00230.71140.026*
C22−0.13252 (15)−0.51842 (19)0.62248 (8)0.0253 (2)
H22A−0.1096−0.60380.57610.038*
H22B−0.1525−0.39030.60070.038*
H22C−0.2273−0.56360.65060.038*
C23−0.23837 (15)−0.72755 (19)0.87505 (8)0.0253 (3)
H23A−0.2809−0.85240.85890.038*
H23B−0.3263−0.64540.89150.038*
H23C−0.1610−0.74170.92230.038*
C240.47030 (15)0.7900 (2)0.91476 (8)0.0273 (3)
H24A0.46050.77780.97540.041*
H24B0.41010.90130.89460.041*
H24C0.58330.80500.90200.041*
U11U22U33U12U13U23
O10.0245 (4)0.0245 (4)0.0156 (4)−0.0009 (3)0.0033 (3)−0.0029 (3)
O20.0243 (4)0.0195 (4)0.0182 (4)0.0043 (3)0.0001 (3)−0.0029 (3)
O30.0264 (4)0.0185 (4)0.0230 (4)−0.0020 (3)0.0031 (3)0.0031 (3)
N10.0191 (4)0.0215 (5)0.0156 (4)0.0032 (4)−0.0004 (3)−0.0014 (4)
N20.0173 (4)0.0184 (4)0.0160 (4)0.0033 (4)0.0008 (3)−0.0005 (4)
N30.0181 (4)0.0199 (5)0.0129 (4)0.0010 (4)0.0027 (3)0.0003 (4)
C10.0141 (4)0.0207 (5)0.0152 (5)0.0038 (4)0.0025 (4)0.0010 (4)
C20.0148 (4)0.0196 (5)0.0146 (5)0.0047 (4)0.0007 (4)0.0011 (4)
C30.0161 (5)0.0200 (5)0.0159 (5)0.0049 (4)0.0000 (4)0.0002 (4)
C40.0166 (5)0.0188 (5)0.0207 (5)0.0030 (4)−0.0007 (4)0.0026 (4)
C50.0172 (5)0.0239 (6)0.0181 (5)0.0037 (4)0.0038 (4)0.0038 (4)
C60.0193 (5)0.0226 (5)0.0142 (4)0.0049 (4)0.0022 (4)0.0003 (4)
C70.0144 (5)0.0197 (5)0.0147 (4)0.0040 (4)0.0006 (4)0.0006 (4)
C80.0156 (5)0.0201 (5)0.0143 (5)0.0045 (4)0.0012 (4)−0.0001 (4)
C90.0174 (5)0.0217 (6)0.0152 (5)0.0054 (4)−0.0001 (4)0.0002 (4)
C100.0191 (5)0.0228 (6)0.0171 (5)0.0045 (4)−0.0013 (4)−0.0033 (4)
C110.0182 (5)0.0198 (6)0.0246 (5)0.0045 (4)−0.0028 (4)−0.0030 (5)
C120.0210 (5)0.0206 (6)0.0246 (5)0.0018 (4)0.0006 (4)0.0009 (4)
C130.0215 (5)0.0196 (5)0.0196 (5)0.0022 (4)0.0027 (4)0.0020 (4)
C140.0166 (5)0.0184 (5)0.0156 (5)0.0033 (4)0.0003 (4)0.0000 (4)
C150.0176 (5)0.0215 (5)0.0139 (4)0.0018 (4)0.0021 (4)0.0020 (4)
C160.0174 (5)0.0148 (5)0.0182 (5)−0.0001 (4)0.0020 (4)−0.0016 (4)
C170.0218 (5)0.0170 (5)0.0212 (5)−0.0004 (4)0.0037 (4)−0.0002 (4)
C180.0253 (6)0.0177 (5)0.0313 (6)−0.0036 (5)0.0114 (5)−0.0005 (5)
C190.0171 (5)0.0208 (6)0.0433 (7)−0.0013 (4)0.0058 (5)−0.0043 (5)
C200.0216 (6)0.0241 (6)0.0346 (6)0.0039 (5)−0.0052 (5)−0.0017 (5)
C210.0230 (5)0.0211 (6)0.0205 (5)0.0031 (4)−0.0004 (4)−0.0011 (4)
C220.0304 (6)0.0237 (6)0.0214 (5)−0.0029 (5)−0.0042 (4)−0.0009 (5)
C230.0236 (6)0.0234 (6)0.0290 (6)−0.0007 (5)0.0042 (5)0.0065 (5)
C240.0243 (6)0.0246 (6)0.0327 (6)−0.0004 (5)−0.0018 (5)−0.0076 (5)
O1—C11.2238 (14)C11—C241.5027 (17)
O2—C31.3702 (14)C12—C131.3538 (17)
O2—C221.4364 (14)C12—H12A0.9500
O3—C41.3634 (14)C13—H13A0.9500
O3—C231.4273 (15)C15—C161.5162 (15)
N1—C91.3246 (16)C15—H15A0.9900
N1—C81.3772 (14)C15—H15B0.9900
N2—C131.3838 (15)C16—C211.3932 (16)
N2—C141.3852 (16)C16—C171.4001 (16)
N2—C91.4180 (14)C17—C181.3905 (16)
N3—C141.3833 (14)C17—H17A0.9500
N3—C11.3983 (15)C18—C191.384 (2)
N3—C151.4675 (14)C18—H18A0.9500
C1—C21.4888 (15)C19—C201.3905 (19)
C2—C31.4093 (17)C19—H19A0.9500
C2—C71.4198 (15)C20—C211.3920 (17)
C3—C41.4080 (15)C20—H20A0.9500
C4—C51.3956 (16)C21—H21A0.9500
C5—C61.3820 (18)C22—H22A0.9800
C5—H5A0.9500C22—H22B0.9800
C6—C71.4015 (16)C22—H22C0.9800
C6—H6A0.9500C23—H23A0.9800
C7—C81.4376 (16)C23—H23B0.9800
C8—C141.3735 (15)C23—H23C0.9800
C9—C101.4160 (17)C24—H24A0.9800
C10—C111.3689 (18)C24—H24B0.9800
C10—H10A0.9500C24—H24C0.9800
C11—C121.4325 (16)
C3—O2—C22114.36 (9)N2—C13—H13A120.2
C4—O3—C23117.04 (10)C8—C14—N3124.06 (11)
C9—N1—C8104.57 (9)C8—C14—N2106.58 (10)
C13—N2—C14134.21 (10)N3—C14—N2129.36 (10)
C13—N2—C9121.07 (10)N3—C15—C16113.18 (9)
C14—N2—C9104.68 (9)N3—C15—H15A108.9
C14—N3—C1120.01 (9)C16—C15—H15A108.9
C14—N3—C15122.98 (10)N3—C15—H15B108.9
C1—N3—C15116.91 (9)C16—C15—H15B108.9
O1—C1—N3118.80 (10)H15A—C15—H15B107.8
O1—C1—C2123.97 (11)C21—C16—C17118.79 (11)
N3—C1—C2117.16 (9)C21—C16—C15122.45 (10)
C3—C2—C7119.22 (10)C17—C16—C15118.75 (10)
C3—C2—C1119.65 (10)C18—C17—C16120.31 (11)
C7—C2—C1121.08 (10)C18—C17—H17A119.8
O2—C3—C4118.08 (11)C16—C17—H17A119.8
O2—C3—C2121.91 (10)C19—C18—C17120.50 (12)
C4—C3—C2119.82 (10)C19—C18—H18A119.7
O3—C4—C5125.26 (11)C17—C18—H18A119.7
O3—C4—C3114.61 (10)C18—C19—C20119.63 (11)
C5—C4—C3120.13 (11)C18—C19—H19A120.2
C6—C5—C4120.28 (11)C20—C19—H19A120.2
C6—C5—H5A119.9C19—C20—C21120.10 (12)
C4—C5—H5A119.9C19—C20—H20A119.9
C5—C6—C7120.85 (10)C21—C20—H20A119.9
C5—C6—H6A119.6C20—C21—C16120.65 (11)
C7—C6—H6A119.6C20—C21—H21A119.7
C6—C7—C2119.51 (11)C16—C21—H21A119.7
C6—C7—C8123.11 (10)O2—C22—H22A109.5
C2—C7—C8117.35 (10)O2—C22—H22B109.5
C14—C8—N1111.75 (10)H22A—C22—H22B109.5
C14—C8—C7119.75 (10)O2—C22—H22C109.5
N1—C8—C7128.45 (10)H22A—C22—H22C109.5
N1—C9—C10129.72 (10)H22B—C22—H22C109.5
N1—C9—N2112.40 (10)O3—C23—H23A109.5
C10—C9—N2117.88 (10)O3—C23—H23B109.5
C11—C10—C9121.21 (10)H23A—C23—H23B109.5
C11—C10—H10A119.4O3—C23—H23C109.5
C9—C10—H10A119.4H23A—C23—H23C109.5
C10—C11—C12118.42 (11)H23B—C23—H23C109.5
C10—C11—C24122.11 (11)C11—C24—H24A109.5
C12—C11—C24119.46 (11)C11—C24—H24B109.5
C13—C12—C11121.70 (12)H24A—C24—H24B109.5
C13—C12—H12A119.2C11—C24—H24C109.5
C11—C12—H12A119.2H24A—C24—H24C109.5
C12—C13—N2119.60 (11)H24B—C24—H24C109.5
C12—C13—H13A120.2
D—H···AD—HH···AD···AD—H···A
C5—H5A···N1i0.952.683.4126 (16)134
C18—H18A···O1ii0.952.363.1127 (16)136
C19—H19A···O1iii0.952.583.3840 (16)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5A⋯N1i0.952.683.4126 (16)134
C18—H18A⋯O1ii0.952.363.1127 (16)136
C19—H19A⋯O1iii0.952.583.3840 (16)142

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  DERIVATIVES OF IMIDAZOLE. I. SYNTHESIS AND REACTIONS OF IMIDAZO(1,2-A)PYRIDINES WITH ANALGESIC, ANTI-INFLAMMATORY, ANTIPYRETIC, AND ANTICONVULSANT ACTIVITY.

Authors:  L ALMIRANTE; L POLO; A MUGNAINI; E PROVINCIALI; P RUGARLI; A BIANCOTTI; A GAMBA; W MURMANN
Journal:  J Med Chem       Date:  1965-05       Impact factor: 7.446

2.  Three-component combinatorial synthesis of a substituted 6H-pyrido[2',1':2,3]imidazo- [4,5-c]isoquinolin-5(6H)-one library with cytotoxic activity.

Authors:  Tao Meng; Zhixiang Zhang; Dingyu Hu; Liping Lin; Jian Ding; Xin Wang; Jingkang Shen
Journal:  J Comb Chem       Date:  2007-06-28

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Synthesis of imidazo[1,2-a]pyridines as antiviral agents.

Authors:  A Gueiffier; S Mavel; M Lhassani; A Elhakmaoui; R Snoeck; G Andrei; O Chavignon; J C Teulade; M Witvrouw; J Balzarini; E De Clercq; J P Chapat
Journal:  J Med Chem       Date:  1998-12-03       Impact factor: 7.446

5.  Synthesis of (aryloxy)alkylamines. 2. Novel imidazo-fused heterocycles with calcium channel blocking and local anesthetic activity.

Authors:  P J Sanfilippo; M Urbanski; J B Press; B Dubinsky; J B Moore
Journal:  J Med Chem       Date:  1988-11       Impact factor: 7.446

  5 in total

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