Literature DB >> 21584023

Dimethyl 6,6'-dicyano-2,2'-bipyridine-3,3'-dicarboxyl-ate.

Xiao He, Gui-Rong Qu, Dongsheng Deng, Baoming Ji.   

Abstract

In the title compound, C(16)H(10)N(4)O(4), the two pyridine rings are twisted by 44.41 (2)° and the ester groups form dihedral angles of 48.77 (4) and 45.75 (2)° with the corresponding pyridine rings. The crystal structure is stabilized by inter-molecular C-H⋯O hydrogen bonds and π-π stacking inter-actions between the pyridine rings [centroid-to-centroid distance 3.797 (2) Å].

Entities:  

Year:  2009        PMID: 21584023      PMCID: PMC2977680          DOI: 10.1107/S1600536809012446

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthetic procedures relevant to preparation of the title compound, see: Tichy et al. (1995 ▶); Glaup et al. (2005 ▶); Heirtzler (1999 ▶)

Experimental

Crystal data

C16H10N4O4 M = 322.28 Triclinic, a = 8.201 (3) Å b = 10.302 (6) Å c = 10.768 (3) Å α = 109.148 (4)° β = 106.091 (3)° γ = 100.404 (5)° V = 787.9 (6) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.49 × 0.45 × 0.41 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.952, T max = 0.960 5613 measured reflections 2845 independent reflections 2391 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.094 S = 1.05 2845 reflections 218 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.12 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXS97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809012446/gk2200sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012446/gk2200Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H10N4O4Z = 2
Mr = 322.28F(000) = 332
Triclinic, P1Dx = 1.358 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.201 (3) ÅCell parameters from 2697 reflections
b = 10.302 (6) Åθ = 2.4–25.5°
c = 10.768 (3) ŵ = 0.10 mm1
α = 109.148 (4)°T = 296 K
β = 106.091 (3)°Block, yellow
γ = 100.404 (5)°0.49 × 0.45 × 0.41 mm
V = 787.9 (6) Å3
Bruker APEXII CCD diffractometer2845 independent reflections
Radiation source: fine-focus sealed tube2391 reflections with I > 2σ(I)
graphiteRint = 0.014
Detector resolution: 0 pixels mm-1θmax = 25.5°, θmin = 2.4°
phi and ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −12→12
Tmin = 0.952, Tmax = 0.960l = −13→12
5613 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.094w = 1/[σ2(Fo2) + (0.0434P)2 + 0.140P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2845 reflectionsΔρmax = 0.15 e Å3
218 parametersΔρmin = −0.11 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.044 (4)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.24082 (14)0.31796 (12)0.50125 (12)0.0430 (3)
N20.10699 (15)−0.04177 (12)0.29318 (12)0.0441 (3)
N30.2207 (3)0.64855 (17)0.68504 (19)0.0880 (5)
N4−0.1464 (3)−0.37966 (17)0.06250 (18)0.0918 (6)
O10.21123 (14)0.07920 (12)0.04429 (10)0.0584 (3)
O30.39330 (14)0.18868 (11)0.78250 (10)0.0537 (3)
O40.55513 (13)0.24358 (11)0.65966 (11)0.0589 (3)
O20.41072 (15)0.03548 (12)0.20273 (11)0.0611 (3)
C20.28278 (17)0.22264 (15)0.28064 (14)0.0425 (3)
C10.25460 (16)0.20947 (14)0.39931 (14)0.0392 (3)
C120.30974 (18)0.10132 (15)0.17406 (14)0.0448 (3)
C30.2918 (2)0.35319 (16)0.26803 (16)0.0520 (4)
H3A0.30700.36420.18920.062*
C40.2783 (2)0.46654 (16)0.37267 (17)0.0534 (4)
H4A0.28500.55530.36680.064*
C50.25452 (18)0.44348 (14)0.48638 (16)0.0461 (3)
C110.2373 (2)0.55804 (17)0.59939 (19)0.0585 (4)
C150.2181 (3)−0.0415 (2)−0.06874 (17)0.0693 (5)
H15A0.1425−0.0479−0.15780.104*
H15B0.1782−0.1288−0.05720.104*
H15C0.3381−0.0277−0.06610.104*
C90.10581 (18)−0.19269 (14)0.42201 (15)0.0448 (3)
H9A0.0618−0.28230.42230.054*
C70.28339 (16)0.05361 (13)0.54006 (13)0.0379 (3)
C60.21790 (16)0.06783 (13)0.41195 (14)0.0382 (3)
C80.22261 (18)−0.07911 (14)0.54392 (15)0.0432 (3)
H8A0.2603−0.09140.62800.052*
C100.05610 (17)−0.16976 (14)0.29983 (14)0.0436 (3)
C140.42572 (18)0.17362 (14)0.66546 (14)0.0416 (3)
C13−0.0581 (2)−0.28668 (17)0.16696 (18)0.0595 (4)
C160.5312 (3)0.2948 (2)0.91195 (18)0.0781 (6)
H16D0.49570.29780.99040.117*
H16A0.54970.38780.90770.117*
H16B0.63980.26920.92350.117*
U11U22U33U12U13U23
N10.0426 (6)0.0382 (6)0.0467 (7)0.0097 (5)0.0153 (5)0.0172 (5)
N20.0445 (6)0.0400 (6)0.0427 (7)0.0101 (5)0.0113 (5)0.0153 (5)
N30.1169 (15)0.0572 (10)0.0928 (13)0.0325 (10)0.0510 (11)0.0193 (9)
N40.0980 (13)0.0583 (10)0.0702 (11)0.0005 (9)0.0005 (10)0.0035 (9)
O10.0661 (7)0.0712 (7)0.0413 (6)0.0318 (6)0.0166 (5)0.0232 (5)
O30.0612 (6)0.0478 (6)0.0391 (5)0.0067 (5)0.0151 (5)0.0092 (5)
O40.0460 (6)0.0583 (7)0.0626 (7)0.0006 (5)0.0143 (5)0.0246 (6)
O20.0594 (7)0.0714 (7)0.0530 (6)0.0332 (6)0.0153 (5)0.0225 (6)
C20.0385 (7)0.0450 (8)0.0438 (8)0.0108 (6)0.0120 (6)0.0209 (6)
C10.0361 (7)0.0385 (7)0.0406 (7)0.0093 (5)0.0106 (5)0.0167 (6)
C120.0417 (7)0.0506 (8)0.0437 (8)0.0114 (6)0.0155 (6)0.0220 (7)
C30.0543 (9)0.0559 (9)0.0567 (9)0.0159 (7)0.0229 (7)0.0335 (8)
C40.0556 (9)0.0434 (8)0.0701 (10)0.0160 (7)0.0239 (8)0.0317 (8)
C50.0422 (7)0.0380 (7)0.0571 (9)0.0109 (6)0.0168 (6)0.0191 (7)
C110.0652 (10)0.0415 (9)0.0706 (11)0.0165 (7)0.0269 (8)0.0225 (8)
C150.0746 (11)0.0858 (13)0.0416 (9)0.0346 (10)0.0174 (8)0.0161 (9)
C90.0437 (7)0.0360 (7)0.0567 (9)0.0096 (6)0.0208 (6)0.0200 (7)
C70.0376 (7)0.0376 (7)0.0402 (7)0.0117 (5)0.0162 (6)0.0158 (6)
C60.0380 (7)0.0369 (7)0.0406 (7)0.0111 (5)0.0149 (6)0.0159 (6)
C80.0467 (7)0.0426 (8)0.0448 (8)0.0132 (6)0.0183 (6)0.0216 (6)
C100.0396 (7)0.0370 (7)0.0463 (8)0.0083 (6)0.0119 (6)0.0118 (6)
C140.0433 (7)0.0370 (7)0.0442 (8)0.0128 (6)0.0135 (6)0.0175 (6)
C130.0613 (10)0.0434 (9)0.0568 (10)0.0070 (7)0.0098 (8)0.0136 (8)
C160.0843 (13)0.0666 (11)0.0445 (10)0.0064 (10)0.0046 (9)−0.0007 (9)
N1—C11.3328 (17)C4—C51.378 (2)
N1—C51.3430 (18)C4—H4A0.9300
N2—C61.3322 (17)C5—C111.451 (2)
N2—C101.3406 (18)C15—H15A0.9600
N3—C111.136 (2)C15—H15B0.9600
N4—C131.139 (2)C15—H15C0.9600
O1—C121.3252 (17)C9—C101.376 (2)
O1—C151.4495 (19)C9—C81.3786 (19)
O3—C141.3249 (17)C9—H9A0.9300
O3—C161.4483 (19)C7—C81.3864 (19)
O4—C141.1999 (16)C7—C61.4011 (18)
O2—C121.1997 (17)C7—C141.4913 (19)
C2—C31.386 (2)C8—H8A0.9300
C2—C11.4038 (19)C10—C131.447 (2)
C2—C121.492 (2)C16—H16D0.9600
C1—C61.4942 (19)C16—H16A0.9600
C3—C41.378 (2)C16—H16B0.9600
C3—H3A0.9300
C1—N1—C5117.06 (12)H15A—C15—H15C109.5
C6—N2—C10117.28 (12)H15B—C15—H15C109.5
C12—O1—C15116.20 (12)C10—C9—C8118.15 (12)
C14—O3—C16115.67 (13)C10—C9—H9A120.9
C3—C2—C1118.21 (13)C8—C9—H9A120.9
C3—C2—C12120.91 (12)C8—C7—C6118.08 (12)
C1—C2—C12120.83 (12)C8—C7—C14120.67 (12)
N1—C1—C2122.74 (12)C6—C7—C14121.05 (11)
N1—C1—C6115.11 (11)N2—C6—C7122.92 (12)
C2—C1—C6121.83 (12)N2—C6—C1114.08 (11)
O2—C12—O1124.85 (14)C7—C6—C1122.83 (12)
O2—C12—C2124.19 (13)C9—C8—C7119.38 (13)
O1—C12—C2110.93 (12)C9—C8—H8A120.3
C4—C3—C2119.75 (13)C7—C8—H8A120.3
C4—C3—H3A120.1N2—C10—C9124.06 (12)
C2—C3—H3A120.1N2—C10—C13115.18 (13)
C3—C4—C5117.53 (13)C9—C10—C13120.76 (13)
C3—C4—H4A121.2O4—C14—O3125.10 (13)
C5—C4—H4A121.2O4—C14—C7123.42 (13)
N1—C5—C4124.68 (13)O3—C14—C7111.43 (11)
N1—C5—C11115.08 (13)N4—C13—C10179.1 (2)
C4—C5—C11120.23 (13)O3—C16—H16D109.5
N3—C11—C5178.05 (19)O3—C16—H16A109.5
O1—C15—H15A109.5H16D—C16—H16A109.5
O1—C15—H15B109.5O3—C16—H16B109.5
H15A—C15—H15B109.5H16D—C16—H16B109.5
O1—C15—H15C109.5H16A—C16—H16B109.5
C5—N1—C1—C20.20 (19)C8—C7—C6—N2−3.22 (19)
C5—N1—C1—C6−173.30 (11)C14—C7—C6—N2171.65 (12)
C3—C2—C1—N1−1.7 (2)C8—C7—C6—C1171.66 (11)
C12—C2—C1—N1175.79 (12)C14—C7—C6—C1−13.47 (18)
C3—C2—C1—C6171.35 (12)N1—C1—C6—N2132.04 (13)
C12—C2—C1—C6−11.14 (19)C2—C1—C6—N2−41.53 (17)
C15—O1—C12—O25.1 (2)N1—C1—C6—C7−43.25 (17)
C15—O1—C12—C2−176.63 (12)C2—C1—C6—C7143.18 (13)
C3—C2—C12—O2129.19 (16)C10—C9—C8—C70.99 (19)
C1—C2—C12—O2−48.3 (2)C6—C7—C8—C92.17 (19)
C3—C2—C12—O1−49.07 (17)C14—C7—C8—C9−172.72 (12)
C1—C2—C12—O1133.48 (13)C6—N2—C10—C92.6 (2)
C1—C2—C3—C41.8 (2)C6—N2—C10—C13−177.41 (12)
C12—C2—C3—C4−175.66 (13)C8—C9—C10—N2−3.6 (2)
C2—C3—C4—C5−0.5 (2)C8—C9—C10—C13176.48 (13)
C1—N1—C5—C41.3 (2)C16—O3—C14—O4−2.7 (2)
C1—N1—C5—C11179.56 (13)C16—O3—C14—C7175.13 (13)
C3—C4—C5—N1−1.1 (2)C8—C7—C14—O4130.87 (15)
C3—C4—C5—C11−179.31 (14)C6—C7—C14—O4−43.86 (19)
C10—N2—C6—C70.86 (19)C8—C7—C14—O3−46.97 (16)
C10—N2—C6—C1−174.43 (11)C6—C7—C14—O3138.30 (12)
D—H···AD—HH···AD···AD—H···A
C4—H4A···O4i0.932.393.222 (3)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4A⋯O4i0.932.393.222 (3)149

Symmetry code: (i) .

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