Literature DB >> 21577680

N,N'-Bis(2,3-dimethoxy-benzyl-idene)propane-1,3-diamine.

Karla Fejfarová, Aliakbar Dehno Khalaji, Michal Dušek.   

Abstract

The title compound, C(21)H(26)N(2)O(4), adopts an E configuration with respect to the azomethine C=N bonds. The dihedral angle between the two rings is 8.16 (8)°. The crystal structure is stabilized by weak inter-molecular C-H⋯O inter-actions.

Entities:  

Year:  2009        PMID: 21577680      PMCID: PMC2970148          DOI: 10.1107/S1600536809031651

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the chemistry of Schiff base derivatives, see: Morshedi et al. (2009a ▶,b ▶); Dehno Khalaji et al. (2009 ▶); Khalaji et al. (2007 ▶); Wang (2008 ▶); Fun et al. (2008 ▶). For their applications, see: Ardizzoia et al. (2009 ▶); Gao et al. (2003 ▶). For the extinction correction, see: Becker & Coppens (1974 ▶).

Experimental

Crystal data

C21H26N2O4 M = 370.4 Orthorhombic, a = 15.3079 (3) Å b = 9.2915 (2) Å c = 13.8059 (3) Å V = 1963.66 (7) Å3 Z = 4 Cu Kα radiation μ = 0.71 mm−1 T = 120 K 0.51 × 0.31 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector Absorption correction: multi-scan (CrysAlis Pro; Oxford Diffraction, 2009 ▶) T min = 0.628, T max = 0.871 26538 measured reflections 1623 independent reflections 1616 reflections with I > 3σ(I) R int = 0.021 θmax = 62.4°

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.077 S = 1.97 1623 reflections 244 parameters H-atom parameters constrained Δρmax = 0.10 e Å−3 Δρmin = −0.09 e Å−3 Data collection: CrysAlis Pro (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis Pro; data reduction: CrysAlis Pro; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2007 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: JANA2006. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809031651/bt5030sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809031651/bt5030Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H26N2O4F(000) = 792
Mr = 370.4Dx = 1.253 Mg m3
Orthorhombic, Pna21Cu Kα radiation, λ = 1.54184 Å
Hall symbol: P 2c -2nCell parameters from 24214 reflections
a = 15.3079 (3) Åθ = 3.2–62.3°
b = 9.2915 (2) ŵ = 0.71 mm1
c = 13.8059 (3) ÅT = 120 K
V = 1963.66 (7) Å3Irregular shape, colorless
Z = 40.51 × 0.31 × 0.20 mm
Oxford Diffraction Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector1623 independent reflections
Radiation source: X-ray tube1616 reflections with I > 3σ(I)
mirrorRint = 0.021
Detector resolution: 20.7567 pixels mm-1θmax = 62.4°, θmin = 5.6°
Rotation method data acquisition using ω scansh = −17→17
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −10→10
Tmin = 0.628, Tmax = 0.871l = −15→15
26538 measured reflections
Refinement on F2H-atom parameters constrained
R[F2 > 2σ(F2)] = 0.025Weighting scheme based on measured s.u.'s w = 1/[σ2(I) + 0.0016I2]
wR(F2) = 0.077(Δ/σ)max = 0.038
S = 1.97Δρmax = 0.10 e Å3
1623 reflectionsΔρmin = −0.09 e Å3
244 parametersExtinction correction: B–C type 1 Lorentzian isotropic (Becker & Coppens, 1974)
0 restraintsExtinction coefficient: 2800 (1000)
105 constraints
Experimental. CrysAlisPro (Oxford Diffraction, 2009) Version 1.171.33.34d (release 27-02-2009 CrysAlis171 .NET) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
O10.26797 (8)0.00499 (13)0.18586 (12)0.0306 (4)
O20.18047 (7)−0.18392 (11)0.07546 (13)0.0282 (3)
O30.46602 (7)0.01788 (12)0.27381 (11)0.0315 (4)
O40.57090 (7)−0.12117 (13)0.40069 (13)0.0348 (4)
N10.22853 (8)0.43567 (14)0.17846 (14)0.0279 (4)
N20.46937 (8)0.45543 (14)0.24531 (14)0.0281 (4)
C10.18698 (9)0.20195 (17)0.11887 (15)0.0239 (4)
C20.20316 (10)0.05443 (16)0.12523 (15)0.0239 (4)
C30.16066 (9)−0.04171 (17)0.06289 (16)0.0246 (4)
C40.10498 (10)0.01093 (17)−0.00881 (15)0.0274 (5)
C50.09133 (10)0.15967 (17)−0.01601 (15)0.0292 (5)
C60.13056 (11)0.25368 (17)0.04693 (16)0.0272 (5)
C70.23004 (10)0.30040 (17)0.18825 (14)0.0246 (4)
C80.27152 (10)0.52016 (17)0.25365 (14)0.0263 (5)
C90.34446 (10)0.61189 (16)0.21099 (14)0.0262 (5)
C100.41895 (11)0.52360 (17)0.16833 (15)0.0277 (5)
C110.47382 (10)0.31972 (17)0.24671 (15)0.0253 (5)
C120.52555 (9)0.24424 (17)0.32177 (14)0.0244 (4)
C130.52359 (10)0.09464 (17)0.32989 (15)0.0249 (4)
C140.57636 (10)0.02498 (19)0.39893 (16)0.0275 (5)
C150.62910 (10)0.10661 (19)0.46004 (15)0.0301 (5)
C160.62956 (11)0.25595 (19)0.45242 (15)0.0303 (5)
C170.57829 (10)0.32443 (18)0.38485 (15)0.0272 (5)
C180.23861 (13)−0.0640 (2)0.27226 (15)0.0402 (6)
C190.14018 (12)−0.28468 (19)0.01141 (16)0.0327 (5)
C200.50416 (12)−0.0730 (2)0.20153 (18)0.0396 (6)
C210.62707 (12)−0.1948 (2)0.46665 (17)0.0400 (6)
H40.076366−0.053919−0.0526750.0329*
H50.0538140.196398−0.0659460.035*
H60.1193660.3550510.0417220.0327*
H70.2602690.260040.2427840.0295*
H8a0.2953030.4567150.3017820.0315*
H8b0.2294310.5813080.2846810.0315*
H9a0.320860.6740640.1620030.0314*
H9b0.3669720.6751380.2599830.0314*
H10a0.3955480.4509550.1262350.0333*
H10b0.4564280.585220.1310650.0333*
H110.4432760.2648080.1985150.0303*
H150.665150.0598580.5074460.0361*
H160.6660350.311720.4947370.0364*
H170.57860.4275750.3808690.0327*
H18a0.288071−0.098410.3081890.0482*
H18b0.2065360.0035920.3110130.0482*
H18c0.201483−0.143530.2557090.0482*
H19a0.156576−0.3806450.0296780.0393*
H19b0.077848−0.2749030.0152110.0393*
H19c0.159047−0.266242−0.0537390.0393*
H20a0.4592−0.1086720.1594260.0475*
H20b0.545747−0.0187760.1643990.0475*
H20c0.533122−0.152410.232290.0475*
H21a0.615974−0.2964070.4632110.0479*
H21b0.686855−0.1762740.4497860.0479*
H21c0.616154−0.161410.5313230.0479*
U11U22U33U12U13U23
O10.0289 (6)0.0321 (7)0.0309 (6)0.0034 (4)−0.0083 (5)0.0007 (5)
O20.0280 (6)0.0220 (6)0.0346 (6)−0.0006 (4)−0.0038 (5)−0.0025 (5)
O30.0245 (6)0.0338 (6)0.0362 (7)−0.0033 (4)−0.0073 (5)−0.0013 (5)
O40.0298 (6)0.0339 (6)0.0405 (7)−0.0035 (4)−0.0091 (5)0.0143 (6)
N10.0261 (7)0.0265 (7)0.0310 (8)0.0016 (5)−0.0001 (6)−0.0017 (6)
N20.0267 (7)0.0287 (7)0.0288 (7)0.0025 (5)0.0028 (6)−0.0020 (6)
C10.0185 (7)0.0264 (8)0.0268 (8)0.0012 (6)0.0048 (6)−0.0005 (7)
C20.0185 (7)0.0281 (8)0.0250 (8)0.0017 (6)0.0011 (6)−0.0002 (6)
C30.0194 (7)0.0245 (8)0.0298 (8)−0.0010 (5)0.0052 (7)−0.0003 (7)
C40.0179 (7)0.0347 (9)0.0297 (9)−0.0020 (6)0.0000 (7)−0.0032 (7)
C50.0225 (8)0.0348 (8)0.0303 (10)0.0045 (6)−0.0027 (7)0.0020 (7)
C60.0237 (8)0.0259 (8)0.0322 (8)0.0035 (6)0.0025 (6)0.0011 (7)
C70.0219 (7)0.0269 (8)0.0250 (8)0.0005 (6)0.0021 (6)−0.0006 (6)
C80.0286 (9)0.0236 (7)0.0266 (8)0.0038 (6)0.0008 (7)−0.0028 (7)
C90.0308 (8)0.0219 (8)0.0258 (8)0.0023 (6)0.0002 (6)−0.0004 (6)
C100.0306 (9)0.0268 (8)0.0257 (8)0.0014 (6)0.0025 (7)0.0002 (7)
C110.0214 (8)0.0302 (8)0.0243 (8)0.0007 (5)0.0019 (6)−0.0039 (7)
C120.0184 (7)0.0313 (8)0.0236 (8)0.0013 (5)0.0046 (6)−0.0018 (7)
C130.0181 (7)0.0327 (8)0.0241 (8)−0.0017 (6)0.0010 (6)−0.0002 (7)
C140.0213 (7)0.0355 (8)0.0256 (8)−0.0001 (6)0.0033 (6)0.0032 (7)
C150.0198 (7)0.0461 (10)0.0243 (8)0.0018 (7)−0.0018 (6)0.0025 (7)
C160.0229 (8)0.0417 (9)0.0264 (9)0.0008 (6)0.0011 (6)−0.0086 (8)
C170.0195 (8)0.0334 (9)0.0289 (9)0.0016 (6)0.0038 (6)−0.0073 (7)
C180.0560 (12)0.0369 (10)0.0277 (9)0.0151 (8)0.0010 (8)0.0018 (7)
C190.0338 (9)0.0256 (8)0.0388 (9)−0.0044 (7)−0.0058 (7)−0.0029 (7)
C200.0442 (10)0.0393 (9)0.0352 (10)−0.0108 (8)−0.0042 (8)−0.0069 (8)
C210.0356 (10)0.0442 (10)0.0401 (10)0.0030 (7)−0.0057 (8)0.0177 (9)
O1—C21.377 (2)C9—H9a0.96
O1—C181.427 (2)C9—H9b0.96
O2—C31.3668 (18)C10—H10a0.96
O2—C191.428 (2)C10—H10b0.96
O3—C131.373 (2)C11—C121.481 (3)
O3—C201.432 (3)C11—H110.96
O4—C141.361 (2)C12—C131.395 (2)
O4—C211.427 (3)C12—C171.402 (2)
N1—C71.264 (2)C13—C141.407 (3)
N1—C81.458 (2)C14—C151.392 (3)
N2—C101.458 (2)C15—C161.392 (2)
N2—C111.263 (2)C15—H150.96
C1—C21.396 (2)C16—C171.375 (3)
C1—C61.401 (3)C16—H160.96
C1—C71.479 (2)C17—H170.96
C2—C31.401 (2)C18—H18a0.96
C3—C41.395 (3)C18—H18b0.96
C4—C51.401 (2)C18—H18c0.96
C4—H40.96C19—H19a0.96
C5—C61.371 (3)C19—H19b0.96
C5—H50.96C19—H19c0.96
C6—H60.96C20—H20a0.96
C7—H70.96C20—H20b0.96
C8—C91.523 (2)C20—H20c0.96
C8—H8a0.96C21—H21a0.96
C8—H8b0.96C21—H21b0.96
C9—C101.523 (2)C21—H21c0.96
C2—O1—C18115.54 (13)N2—C11—C12120.82 (17)
C3—O2—C19117.35 (15)N2—C11—H11119.5897
C13—O3—C20115.95 (13)C12—C11—H11119.5889
C14—O4—C21116.94 (15)C11—C12—C13121.11 (15)
C7—N1—C8116.79 (16)C11—C12—C17119.41 (14)
C10—N2—C11118.25 (16)C13—C12—C17119.48 (16)
C2—C1—C6119.40 (16)O3—C13—C12119.09 (15)
C2—C1—C7119.17 (16)O3—C13—C14120.77 (15)
C6—C1—C7121.43 (14)C12—C13—C14120.03 (16)
O1—C2—C1119.59 (15)O4—C14—C13115.84 (16)
O1—C2—C3119.70 (13)O4—C14—C15124.64 (17)
C1—C2—C3120.35 (16)C13—C14—C15119.52 (16)
O2—C3—C2115.82 (16)C14—C15—C16120.02 (17)
O2—C3—C4124.38 (16)C14—C15—H15119.9905
C2—C3—C4119.75 (14)C16—C15—H15119.9904
C3—C4—C5119.16 (16)C15—C16—C17120.65 (17)
C3—C4—H4120.42C15—C16—H16119.6771
C5—C4—H4120.4205C17—C16—H16119.6769
C4—C5—C6121.22 (17)C12—C17—C16120.28 (15)
C4—C5—H5119.3896C12—C17—H17119.8593
C6—C5—H5119.3903C16—C17—H17119.8611
C1—C6—C5120.05 (15)O1—C18—H18a109.4709
C1—C6—H6119.9753O1—C18—H18b109.4711
C5—C6—H6119.9765O1—C18—H18c109.4709
N1—C7—C1122.50 (17)H18a—C18—H18b109.4714
N1—C7—H7118.7511H18a—C18—H18c109.4717
C1—C7—H7118.7506H18b—C18—H18c109.4712
N1—C8—C9110.91 (16)O2—C19—H19a109.4712
N1—C8—H8a109.4708O2—C19—H19b109.4713
N1—C8—H8b109.4707O2—C19—H19c109.4707
C9—C8—H8a109.4715H19a—C19—H19b109.4714
C9—C8—H8b109.4712H19a—C19—H19c109.4716
H8a—C8—H8b107.9975H19b—C19—H19c109.4711
C8—C9—C10113.38 (13)O3—C20—H20a109.4712
C8—C9—H9a109.4711O3—C20—H20b109.4716
C8—C9—H9b109.471O3—C20—H20c109.4718
C10—C9—H9a109.4708H20a—C20—H20b109.471
C10—C9—H9b109.4724H20a—C20—H20c109.4707
H9a—C9—H9b105.2553H20b—C20—H20c109.4711
N2—C10—C9110.39 (16)O4—C21—H21a109.4718
N2—C10—H10a109.4708O4—C21—H21b109.4707
N2—C10—H10b109.4703O4—C21—H21c109.4713
C9—C10—H10a109.472H21a—C21—H21b109.4709
C9—C10—H10b109.4717H21a—C21—H21c109.4715
H10a—C10—H10b108.5415H21b—C21—H21c109.4711
D—H···AD—HH···AD···AD—H···A
C5—H5···O4i0.962.593.411 (2)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O4i0.962.593.411 (2)143

Symmetry code: (i) .

  4 in total

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2.  N,N'-Bis(3,4-dimethoxy-benzyl-idene)butane-1,4-diamine.

Authors:  Aliakbar Dehno Khalaji; Karla Fejfarova; Michal Dusek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-04

3.  New one-dimensional azido-bridged manganese(II) coordination polymers exhibiting alternating ferromagnetic-antiferromagnetic interactions: structural and magnetic studies.

Authors:  En-Qing Gao; Shi-Qiang Bai; Yan-Feng Yue; Zhe-Ming Wang; Chun-Hua Yan
Journal:  Inorg Chem       Date:  2003-06-02       Impact factor: 5.165

4.  N,N'-Bis(3-methoxy-benzyl-idene)ethane-1,2-diamine.

Authors:  Hoong-Kun Fun; Valiollah Mirkhani; Akbar Rostami Vartooni
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-23
  4 in total

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