Literature DB >> 21577663

2-(5-Methyl-3-methyl-sulfinyl-1-benzofuran-2-yl)acetic acid.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(12)H(12)O(4)S, the O atom and the methyl group of the methyl-sulfinyl substituent are located on opposite sides of the plane of the benzofuran fragment. In the crystal structure, inter-molecular C-H⋯O and O-H⋯O hydrogen-bonding inter-actions are found. The structure also exhibits aromatic π-π inter-actions between the furan and benzene rings [centroid-centroid distance = 3.841 (5) Å].

Entities:  

Year:  2009        PMID: 21577663      PMCID: PMC2969989          DOI: 10.1107/S1600536809033765

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar alkyl 2-(5-methyl-3-methyl­sulfinyl-1-benzofuran-2-yl)acetate derivatives, see: Choi et al. (2008 ▶). For the pharmacological properties of benzofuran compounds, see: Howlett et al. (1999 ▶); Twyman & Allsop (1999 ▶). For natural products that contain benzofuran ring systems, see: Akgul & Anil (2003 ▶); von Reuss & König (2004 ▶).

Experimental

Crystal data

C12H12O4S M = 252.28 Orthorhombic, a = 7.767 (1) Å b = 16.248 (2) Å c = 18.733 (2) Å V = 2364.1 (5) Å3 Z = 8 Mo Kα radiation μ = 0.27 mm−1 T = 293 K 0.40 × 0.20 × 0.05 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.899, T max = 0.987 13669 measured reflections 2690 independent reflections 1461 reflections with I > 2σ(I) R int = 0.110

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.156 S = 1.04 2690 reflections 160 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.45 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809033765/nc2155sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033765/nc2155Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12O4SDx = 1.418 Mg m3
Mr = 252.28Melting point = 461–462 K
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2314 reflections
a = 7.767 (1) Åθ = 2.7–23.2°
b = 16.248 (2) ŵ = 0.27 mm1
c = 18.733 (2) ÅT = 293 K
V = 2364.1 (5) Å3Block, colorless
Z = 80.40 × 0.20 × 0.05 mm
F(000) = 1056
Bruker SMART CCD diffractometer2690 independent reflections
Radiation source: fine-focus sealed tube1461 reflections with I > 2σ(I)
graphiteRint = 0.110
Detector resolution: 10.0 pixels mm-1θmax = 27.5°, θmin = 2.2°
φ and ω scansh = −8→10
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)k = −20→21
Tmin = 0.899, Tmax = 0.987l = −24→24
13669 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: difference Fourier map
wR(F2) = 0.156H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0469P)2 + 5.6706P] where P = (Fo2 + 2Fc2)/3
2690 reflections(Δ/σ)max < 0.001
160 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.45 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.11771 (12)0.71553 (6)0.38153 (5)0.0201 (2)
O10.2472 (3)0.49764 (16)0.45410 (13)0.0239 (6)
O20.6841 (4)0.67768 (18)0.46398 (15)0.0285 (7)
H20.761 (7)0.697 (3)0.437 (3)0.057 (17)*
O30.5236 (4)0.6591 (2)0.36700 (15)0.0429 (9)
O4−0.0703 (3)0.73974 (16)0.38751 (15)0.0304 (7)
C10.1334 (5)0.6112 (2)0.40470 (19)0.0198 (8)
C20.0240 (5)0.5428 (2)0.38493 (19)0.0206 (8)
C3−0.1287 (5)0.5323 (2)0.34684 (19)0.0232 (8)
H3−0.18370.57730.32630.028*
C4−0.1973 (5)0.4540 (2)0.3400 (2)0.0262 (9)
C5−0.1128 (5)0.3867 (2)0.3718 (2)0.0263 (9)
H5−0.15940.33440.36640.032*
C60.0363 (5)0.3956 (2)0.4107 (2)0.0238 (9)
H60.09100.35090.43170.029*
C70.1005 (5)0.4747 (2)0.41678 (19)0.0201 (8)
C80.2619 (5)0.5814 (2)0.44641 (18)0.0203 (8)
C90.4120 (5)0.6207 (2)0.48186 (19)0.0228 (9)
H9A0.46660.58060.51290.027*
H9B0.37130.66560.51150.027*
C100.5441 (5)0.6535 (2)0.4304 (2)0.0218 (8)
C11−0.3638 (6)0.4401 (3)0.2989 (2)0.0419 (12)
H11A−0.43950.48600.30620.063*
H11B−0.41830.39070.31570.063*
H11C−0.33860.43480.24900.063*
C120.1561 (6)0.7075 (3)0.2878 (2)0.0349 (11)
H12A0.07700.66870.26740.052*
H12B0.27190.68910.27980.052*
H12C0.14000.76030.26590.052*
U11U22U33U12U13U23
S0.0185 (5)0.0201 (4)0.0216 (4)−0.0006 (4)0.0017 (4)0.0006 (4)
O10.0196 (14)0.0243 (14)0.0278 (15)−0.0018 (11)−0.0061 (12)0.0021 (12)
O20.0196 (15)0.0405 (18)0.0254 (15)−0.0086 (13)−0.0019 (13)0.0023 (13)
O30.0280 (18)0.081 (2)0.0198 (15)−0.0110 (17)−0.0037 (13)0.0048 (15)
O40.0202 (15)0.0282 (15)0.0429 (17)0.0063 (12)0.0086 (13)0.0054 (13)
C10.020 (2)0.0197 (19)0.0195 (18)−0.0005 (16)0.0013 (16)−0.0011 (15)
C20.022 (2)0.024 (2)0.0159 (18)0.0014 (16)0.0032 (16)−0.0024 (16)
C30.023 (2)0.025 (2)0.0217 (19)0.0007 (18)−0.0037 (17)0.0020 (16)
C40.024 (2)0.035 (2)0.0197 (19)−0.0046 (19)−0.0036 (17)−0.0004 (18)
C50.033 (2)0.0207 (19)0.025 (2)−0.0072 (19)0.0007 (19)−0.0001 (16)
C60.024 (2)0.021 (2)0.026 (2)0.0005 (17)−0.0034 (18)0.0047 (16)
C70.018 (2)0.025 (2)0.0181 (18)0.0005 (17)−0.0005 (16)−0.0006 (15)
C80.020 (2)0.025 (2)0.0169 (18)−0.0017 (16)0.0018 (16)−0.0024 (16)
C90.021 (2)0.028 (2)0.0186 (18)−0.0006 (17)−0.0023 (16)−0.0018 (16)
C100.0144 (19)0.029 (2)0.0215 (19)0.0023 (17)−0.0009 (16)−0.0048 (16)
C110.037 (3)0.045 (3)0.044 (3)−0.013 (2)−0.019 (2)0.010 (2)
C120.034 (3)0.046 (3)0.025 (2)0.006 (2)0.0006 (18)0.005 (2)
S—O41.516 (3)C4—C111.522 (6)
S—C11.754 (4)C5—C61.375 (6)
S—C121.786 (4)C5—H50.9300
O1—C81.374 (4)C6—C71.383 (5)
O1—C71.388 (4)C6—H60.9300
O2—C101.316 (5)C8—C91.486 (5)
O2—H20.85 (5)C9—C101.506 (5)
O3—C101.202 (4)C9—H9A0.9700
C1—C81.356 (5)C9—H9B0.9700
C1—C21.447 (5)C11—H11A0.9600
C2—C71.390 (5)C11—H11B0.9600
C2—C31.394 (5)C11—H11C0.9600
C3—C41.385 (5)C12—H12A0.9600
C3—H30.9300C12—H12B0.9600
C4—C51.408 (5)C12—H12C0.9600
O4—S—C1107.41 (17)O1—C7—C2110.7 (3)
O4—S—C12104.62 (19)C1—C8—O1110.7 (3)
C1—S—C1299.26 (19)C1—C8—C9133.0 (4)
C8—O1—C7106.3 (3)O1—C8—C9116.3 (3)
C10—O2—H2114 (3)C8—C9—C10113.6 (3)
C8—C1—C2107.8 (3)C8—C9—H9A108.8
C8—C1—S122.6 (3)C10—C9—H9A108.8
C2—C1—S129.7 (3)C8—C9—H9B108.8
C7—C2—C3119.1 (3)C10—C9—H9B108.8
C7—C2—C1104.5 (3)H9A—C9—H9B107.7
C3—C2—C1136.4 (4)O3—C10—O2124.0 (4)
C4—C3—C2119.1 (4)O3—C10—C9124.7 (4)
C4—C3—H3120.4O2—C10—C9111.3 (3)
C2—C3—H3120.4C4—C11—H11A109.5
C3—C4—C5119.6 (4)C4—C11—H11B109.5
C3—C4—C11120.7 (4)H11A—C11—H11B109.5
C5—C4—C11119.7 (4)C4—C11—H11C109.5
C6—C5—C4122.3 (4)H11A—C11—H11C109.5
C6—C5—H5118.8H11B—C11—H11C109.5
C4—C5—H5118.8S—C12—H12A109.5
C5—C6—C7116.5 (4)S—C12—H12B109.5
C5—C6—H6121.8H12A—C12—H12B109.5
C7—C6—H6121.8S—C12—H12C109.5
C6—C7—O1125.9 (3)H12A—C12—H12C109.5
C6—C7—C2123.3 (4)H12B—C12—H12C109.5
O4—S—C1—C8−138.0 (3)C8—O1—C7—C6−179.5 (4)
C12—S—C1—C8113.4 (3)C8—O1—C7—C20.8 (4)
O4—S—C1—C242.9 (4)C3—C2—C7—C62.4 (6)
C12—S—C1—C2−65.7 (4)C1—C2—C7—C6−179.6 (3)
C8—C1—C2—C7−0.9 (4)C3—C2—C7—O1−177.9 (3)
S—C1—C2—C7178.3 (3)C1—C2—C7—O10.1 (4)
C8—C1—C2—C3176.6 (4)C2—C1—C8—O11.5 (4)
S—C1—C2—C3−4.2 (7)S—C1—C8—O1−177.8 (2)
C7—C2—C3—C4−1.9 (5)C2—C1—C8—C9179.3 (4)
C1—C2—C3—C4−179.1 (4)S—C1—C8—C90.0 (6)
C2—C3—C4—C50.4 (6)C7—O1—C8—C1−1.4 (4)
C2—C3—C4—C11179.9 (4)C7—O1—C8—C9−179.6 (3)
C3—C4—C5—C60.8 (6)C1—C8—C9—C10−66.5 (5)
C11—C4—C5—C6−178.8 (4)O1—C8—C9—C10111.2 (4)
C4—C5—C6—C7−0.3 (6)C8—C9—C10—O310.1 (6)
C5—C6—C7—O1179.1 (3)C8—C9—C10—O2−171.7 (3)
C5—C6—C7—C2−1.2 (6)
D—H···AD—HH···AD···AD—H···A
C9—H9B···O4i0.972.483.339 (5)148
O2—H2···O4ii0.85 (6)1.74 (6)2.590 (4)175 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9B⋯O4i0.972.483.339 (5)148
O2—H2⋯O4ii0.85 (6)1.74 (6)2.590 (4)175 (5)

Symmetry codes: (i) ; (ii) .

  6 in total

1.  Inhibition of fibril formation in beta-amyloid peptide by a novel series of benzofurans.

Authors:  D R Howlett; A E Perry; F Godfrey; J E Swatton; K H Jennings; C Spitzfaden; H Wadsworth; S J Wood; R E Markwell
Journal:  Biochem J       Date:  1999-05-15       Impact factor: 3.857

2.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Methyl 2-(5-methyl-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

5.  Corsifurans A-C, 2-arylbenzofurans of presumed stilbenoid origin from Corsinia coriandrina (Hepaticae).

Authors:  Stephan H von Reuss; Wilfried A König
Journal:  Phytochemistry       Date:  2004-12       Impact factor: 4.072

6.  Isopropyl 2-(5-methyl-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-09
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.