Literature DB >> 21583471

5-(2,4-Dichloro-phenoxy-meth-yl)-1,3,4-thia-diazol-2-amine.

Yao Wang1, Rong Wan, Feng Han, Peng Wang.   

Abstract

The title compound, C(9)H(7)Cl(2)N(3)OS, was synthesized by the reaction of 2,4-dichloro-phenoxy-acetic acid and thio-semicarbazide. The dihedral angle between the thia-diazole and benzene rings is 21.5 (2)°. In the crystal, inter-molecular N-H⋯N hydrogen bonding links the mol-ecules into chains along the b axis.

Entities:  

Year:  2009        PMID: 21583471      PMCID: PMC2977151          DOI: 10.1107/S1600536809025227

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the biological activity of 1,3,4-thia­diazole derivatives, see: Nakagawa et al. (1996 ▶); Wang et al. (1999 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C9H7Cl2N3OS M = 276.14 Monoclinic, a = 16.012 (3) Å b = 6.5840 (13) Å c = 11.225 (2) Å β = 105.65 (3)° V = 1139.5 (4) Å3 Z = 4 Mo Kα radiation μ = 0.73 mm−1 T = 293 K 0.20 × 0.10 × 0.05 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.867, T max = 0.964 2142 measured reflections 2065 independent reflections 1472 reflections with I > 2σ(I) R int = 0.044 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.145 S = 1.01 2065 reflections 145 parameters 13 restraints H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809025227/at2822sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809025227/at2822Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H7Cl2N3OSF(000) = 560
Mr = 276.14Dx = 1.610 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 16.012 (3) Åθ = 9–12°
b = 6.5840 (13) ŵ = 0.73 mm1
c = 11.225 (2) ÅT = 293 K
β = 105.65 (3)°Block, colourless
V = 1139.5 (4) Å30.20 × 0.10 × 0.05 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer1472 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.044
graphiteθmax = 25.3°, θmin = 1.3°
ω/2θ scansh = −19→0
Absorption correction: ψ scan (North et al., 1968)k = 0→7
Tmin = 0.867, Tmax = 0.964l = −12→13
2142 measured reflections3 standard reflections every 200 reflections
2065 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.07P)2 + 1.2P] where P = (Fo2 + 2Fc2)/3
2065 reflections(Δ/σ)max < 0.001
145 parametersΔρmax = 0.37 e Å3
13 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.63610 (7)0.07359 (17)0.41374 (9)0.0408 (3)
Cl10.95777 (9)−0.98076 (19)0.66498 (12)0.0600 (4)
Cl20.85657 (8)−0.29796 (18)0.40088 (10)0.0477 (3)
N10.5928 (2)0.1009 (5)0.6153 (3)0.0348 (8)
N20.5586 (2)0.2734 (5)0.5485 (3)0.0352 (8)
N30.5498 (3)0.4294 (6)0.3589 (3)0.0559 (12)
H3A0.52070.52970.37640.067*
H3B0.56230.42610.28910.067*
O0.7388 (2)−0.2539 (5)0.5496 (3)0.0479 (8)
C10.8892 (3)−0.7718 (6)0.6285 (4)0.0366 (10)
C20.8284 (3)−0.7396 (6)0.6931 (4)0.0400 (10)
H2B0.8224−0.83140.75320.048*
C30.7761 (3)−0.5675 (7)0.6670 (4)0.0417 (10)
H3C0.7346−0.54480.70970.050*
C40.7852 (3)−0.4306 (6)0.5786 (3)0.0313 (9)
C50.8461 (3)−0.4680 (6)0.5143 (4)0.0326 (9)
C60.8981 (3)−0.6391 (7)0.5372 (4)0.0378 (10)
H6A0.9381−0.66420.49240.045*
C70.6719 (3)−0.2139 (6)0.6069 (4)0.0358 (10)
H7A0.6952−0.20710.69600.043*
H7B0.6283−0.32000.58730.043*
C80.6334 (2)−0.0139 (6)0.5571 (4)0.0324 (9)
C90.5755 (3)0.2781 (6)0.4406 (4)0.0359 (10)
U11U22U33U12U13U23
S0.0456 (7)0.0430 (6)0.0397 (6)0.0169 (5)0.0214 (5)0.0012 (5)
Cl10.0573 (8)0.0422 (7)0.0793 (9)0.0218 (6)0.0166 (7)0.0150 (6)
Cl20.0500 (7)0.0449 (7)0.0540 (7)0.0090 (5)0.0240 (5)0.0130 (5)
N10.037 (2)0.0338 (19)0.0363 (18)0.0077 (16)0.0141 (15)0.0023 (15)
N20.037 (2)0.0342 (19)0.0387 (18)0.0093 (16)0.0177 (15)0.0007 (15)
N30.079 (3)0.057 (3)0.043 (2)0.037 (2)0.035 (2)0.0209 (19)
O0.0479 (19)0.0354 (17)0.072 (2)0.0200 (15)0.0357 (16)0.0153 (15)
C10.034 (2)0.025 (2)0.044 (2)0.0048 (18)−0.0003 (19)0.0016 (18)
C20.042 (3)0.031 (2)0.046 (2)−0.001 (2)0.012 (2)0.0081 (19)
C30.035 (2)0.041 (2)0.054 (2)0.002 (2)0.021 (2)0.000 (2)
C40.033 (2)0.0232 (19)0.038 (2)0.0048 (17)0.0101 (17)0.0009 (16)
C50.030 (2)0.028 (2)0.042 (2)0.0012 (17)0.0128 (18)−0.0059 (17)
C60.027 (2)0.038 (2)0.047 (2)0.0055 (19)0.0083 (18)−0.0035 (19)
C70.034 (2)0.036 (2)0.041 (2)0.0033 (19)0.0159 (18)−0.0004 (18)
C80.023 (2)0.033 (2)0.041 (2)0.0002 (17)0.0097 (17)−0.0042 (18)
C90.032 (2)0.039 (2)0.038 (2)0.0086 (19)0.0117 (17)−0.0003 (19)
S—C81.721 (4)C1—C21.378 (6)
S—C91.733 (4)C1—C61.383 (6)
Cl1—C11.739 (4)C2—C31.393 (6)
Cl2—C51.737 (4)C2—H2B0.9300
N1—C81.284 (5)C3—C41.377 (6)
N1—N21.389 (5)C3—H3C0.9300
N2—C91.311 (5)C4—C51.382 (5)
N3—C91.341 (5)C5—C61.383 (6)
N3—H3A0.8600C6—H6A0.9300
N3—H3B0.8600C7—C81.497 (6)
O—C41.372 (5)C7—H7A0.9700
O—C71.414 (5)C7—H7B0.9700
C8—S—C986.61 (19)C4—C5—C6121.5 (4)
C8—N1—N2112.8 (3)C4—C5—Cl2119.3 (3)
C9—N2—N1111.6 (3)C6—C5—Cl2119.3 (3)
C9—N3—H3A120.0C1—C6—C5118.4 (4)
C9—N3—H3B120.0C1—C6—H6A120.8
H3A—N3—H3B120.0C5—C6—H6A120.8
C4—O—C7118.6 (3)O—C7—C8106.3 (3)
C2—C1—C6121.4 (4)O—C7—H7A110.5
C2—C1—Cl1119.3 (3)C8—C7—H7A110.5
C6—C1—Cl1119.3 (3)O—C7—H7B110.5
C1—C2—C3119.0 (4)C8—C7—H7B110.5
C1—C2—H2B120.5H7A—C7—H7B108.7
C3—C2—H2B120.5N1—C8—C7122.8 (4)
C4—C3—C2120.6 (4)N1—C8—S115.0 (3)
C4—C3—H3C119.7C7—C8—S122.1 (3)
C2—C3—H3C119.7N2—C9—N3123.2 (4)
O—C4—C3124.7 (4)N2—C9—S114.0 (3)
O—C4—C5116.1 (3)N3—C9—S122.8 (3)
C3—C4—C5119.1 (4)
C8—N1—N2—C90.4 (5)C4—C5—C6—C1−1.3 (6)
C6—C1—C2—C3−1.1 (6)Cl2—C5—C6—C1179.6 (3)
Cl1—C1—C2—C3177.4 (3)C4—O—C7—C8−179.7 (3)
C1—C2—C3—C4−0.4 (6)N2—N1—C8—C7−176.7 (3)
C7—O—C4—C3−5.1 (6)N2—N1—C8—S0.4 (4)
C7—O—C4—C5176.1 (4)O—C7—C8—N1−156.2 (4)
C2—C3—C4—O−177.7 (4)O—C7—C8—S26.9 (5)
C2—C3—C4—C51.1 (6)C9—S—C8—N1−0.8 (3)
O—C4—C5—C6178.6 (4)C9—S—C8—C7176.3 (4)
C3—C4—C5—C6−0.2 (6)N1—N2—C9—N3−179.7 (4)
O—C4—C5—Cl2−2.2 (5)N1—N2—C9—S−1.1 (5)
C3—C4—C5—Cl2178.9 (3)C8—S—C9—N21.1 (3)
C2—C1—C6—C51.9 (6)C8—S—C9—N3179.8 (4)
Cl1—C1—C6—C5−176.5 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N2i0.862.142.983 (5)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N2i0.862.142.983 (5)166

Symmetry code: (i) .

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