Literature DB >> 21577530

5-Fluoro-2-(4-iodo-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(15)H(10)FIO(2)S, the O atom and the methyl group of the methyl-sulfinyl substituent lie on opposite sides of the plane through the benzofuran fragment. The 4-iodo-phenyl ring is rotated out of the benzofuran plane by a dihedral angle of 39.4 (1)°. The crystal structure is stabilized by an inter-molecular C-H⋯O hydrogen bond and an I⋯O halogen bond [3.055 (2) Å]. The crystal structure also exhibits an inter-molecular C-H⋯π inter-action between the methyl H atom and the 4-iodo-phenyl ring of an adjacent benzofuran mol-ecule, and aromatic π-π inter-actions between the benzene rings of neighbouring benzofuran systems [centroid-centroid distance = 3.558 (3) Å].

Entities:  

Year:  2009        PMID: 21577530      PMCID: PMC2970055          DOI: 10.1107/S1600536809030992

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar 2-(4-iodo­phen­yl)-3-methyl­sulfinyl-1-benzofuran derivatives, see: Choi et al. (2008a ▶,b ▶). For the pharmacological activity of benzofuran compounds, see: Howlett et al. (1999 ▶); Twyman & Allsop (1999 ▶). For a review of halogen bonding, see: Politzer et al. (2007 ▶).

Experimental

Crystal data

C15H10FIO2S M = 400.19 Triclinic, a = 8.8989 (5) Å b = 9.2370 (5) Å c = 10.3357 (5) Å α = 105.579 (1)° β = 115.302 (1)° γ = 101.671 (1)° V = 689.08 (6) Å3 Z = 2 Mo Kα radiation μ = 2.48 mm−1 T = 273 K 0.25 × 0.15 × 0.10 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶)) T min = 0.650, T max = 0.784 5972 measured reflections 2957 independent reflections 2689 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.055 S = 1.09 2957 reflections 182 parameters H-atom parameters constrained Δρmax = 0.68 e Å−3 Δρmin = −0.55 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809030992/vm2001sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809030992/vm2001Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H10FIO2SZ = 2
Mr = 400.19F(000) = 388
Triclinic, P1Dx = 1.929 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.8989 (5) ÅCell parameters from 4508 reflections
b = 9.2370 (5) Åθ = 2.4–27.4°
c = 10.3357 (5) ŵ = 2.48 mm1
α = 105.579 (1)°T = 273 K
β = 115.302 (1)°Block, colorless
γ = 101.671 (1)°0.25 × 0.15 × 0.10 mm
V = 689.08 (6) Å3
Bruker SMART CCD diffractometer2957 independent reflections
Radiation source: fine-focus sealed tube2689 reflections with I > 2σ(I)
graphiteRint = 0.017
Detector resolution: 10.0 pixels mm-1θmax = 27.0°, θmin = 2.4°
φ and ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Sheldrick, 2000))k = −11→11
Tmin = 0.650, Tmax = 0.784l = −13→13
5972 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.022Hydrogen site location: difference Fourier map
wR(F2) = 0.055H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0248P)2 + 0.3594P] where P = (Fo2 + 2Fc2)/3
2957 reflections(Δ/σ)max = 0.001
182 parametersΔρmax = 0.68 e Å3
0 restraintsΔρmin = −0.55 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I0.87629 (2)0.09755 (2)−0.19147 (2)0.03012 (7)
S0.81950 (8)0.77048 (7)0.37848 (7)0.02442 (13)
F0.2583 (2)0.7621 (2)0.5294 (2)0.0428 (4)
O10.4384 (2)0.3431 (2)0.1980 (2)0.0233 (4)
O20.8909 (3)0.8594 (2)0.5482 (2)0.0356 (4)
C10.6269 (3)0.6020 (3)0.3101 (3)0.0219 (5)
C20.4906 (3)0.5987 (3)0.3510 (3)0.0222 (5)
C30.4518 (3)0.7126 (3)0.4387 (3)0.0264 (5)
H30.52420.82140.49040.032*
C40.3009 (4)0.6553 (3)0.4443 (3)0.0292 (6)
C50.1882 (4)0.4941 (4)0.3707 (3)0.0310 (6)
H50.08710.46340.37830.037*
C60.2275 (3)0.3798 (3)0.2861 (3)0.0269 (5)
H60.15620.27090.23670.032*
C70.3788 (3)0.4369 (3)0.2791 (3)0.0226 (5)
C80.5907 (3)0.4480 (3)0.2194 (3)0.0220 (5)
C90.6706 (3)0.3730 (3)0.1356 (3)0.0215 (5)
C100.6734 (3)0.2185 (3)0.1215 (3)0.0254 (5)
H100.63230.16710.17240.030*
C110.7365 (3)0.1415 (3)0.0331 (3)0.0262 (5)
H110.73770.03890.02420.031*
C120.7985 (3)0.2194 (3)−0.0429 (3)0.0225 (5)
C130.7989 (3)0.3733 (3)−0.0283 (3)0.0225 (5)
H130.84100.4247−0.07860.027*
C140.7364 (3)0.4501 (3)0.0616 (3)0.0225 (5)
H140.73840.55390.07250.027*
C150.7072 (4)0.8817 (3)0.2787 (3)0.0356 (6)
H15A0.62140.89980.30760.053*
H15B0.64750.82120.16790.053*
H15C0.79290.98350.30710.053*
U11U22U33U12U13U23
I0.03872 (11)0.03141 (10)0.02933 (10)0.01738 (8)0.02328 (8)0.01132 (8)
S0.0221 (3)0.0233 (3)0.0206 (3)0.0048 (2)0.0092 (3)0.0043 (2)
F0.0485 (11)0.0531 (11)0.0389 (10)0.0314 (9)0.0292 (9)0.0139 (8)
O10.0238 (9)0.0208 (8)0.0252 (9)0.0074 (7)0.0141 (7)0.0070 (7)
O20.0340 (11)0.0350 (11)0.0230 (9)0.0030 (9)0.0127 (8)0.0015 (8)
C10.0206 (12)0.0228 (12)0.0181 (11)0.0074 (10)0.0076 (10)0.0065 (10)
C20.0212 (12)0.0263 (12)0.0165 (11)0.0101 (10)0.0071 (10)0.0084 (10)
C30.0302 (13)0.0279 (13)0.0194 (12)0.0138 (11)0.0112 (11)0.0073 (10)
C40.0329 (14)0.0414 (15)0.0209 (12)0.0251 (13)0.0149 (11)0.0126 (12)
C50.0256 (13)0.0466 (16)0.0299 (14)0.0187 (12)0.0161 (12)0.0206 (13)
C60.0239 (13)0.0313 (14)0.0264 (13)0.0110 (11)0.0117 (11)0.0140 (11)
C70.0249 (12)0.0263 (12)0.0185 (11)0.0132 (10)0.0102 (10)0.0100 (10)
C80.0225 (12)0.0239 (12)0.0188 (11)0.0076 (10)0.0096 (10)0.0097 (10)
C90.0195 (12)0.0198 (11)0.0188 (11)0.0058 (9)0.0074 (10)0.0042 (9)
C100.0287 (13)0.0248 (12)0.0257 (13)0.0093 (11)0.0150 (11)0.0128 (11)
C110.0317 (14)0.0218 (12)0.0289 (13)0.0117 (11)0.0169 (11)0.0113 (11)
C120.0215 (12)0.0238 (12)0.0190 (11)0.0074 (10)0.0104 (10)0.0046 (10)
C130.0205 (12)0.0253 (12)0.0183 (11)0.0050 (10)0.0090 (10)0.0079 (10)
C140.0214 (12)0.0203 (11)0.0206 (12)0.0064 (10)0.0076 (10)0.0072 (10)
C150.0327 (15)0.0257 (14)0.0391 (16)0.0067 (12)0.0117 (13)0.0141 (12)
I—C122.098 (2)C6—C71.383 (3)
I—O2i3.055 (2)C6—H60.9300
S—O21.489 (2)C8—C91.463 (3)
S—C11.776 (2)C9—C141.394 (3)
S—C151.794 (3)C9—C101.402 (3)
F—C41.364 (3)C10—C111.381 (4)
O1—C71.382 (3)C10—H100.9300
O1—C81.386 (3)C11—C121.398 (3)
C1—C81.359 (3)C11—H110.9300
C1—C21.443 (3)C12—C131.387 (3)
C2—C71.395 (3)C13—C141.387 (3)
C2—C31.396 (3)C13—H130.9300
C3—C41.373 (4)C14—H140.9300
C3—H30.9300C15—H15A0.9600
C4—C51.391 (4)C15—H15B0.9600
C5—C61.384 (4)C15—H15C0.9600
C5—H50.9300
C12—I—O2i165.26 (8)C1—C8—C9134.3 (2)
O2—S—C1106.61 (11)O1—C8—C9114.9 (2)
O2—S—C15107.29 (13)C14—C9—C10119.0 (2)
C1—S—C1597.37 (12)C14—C9—C8120.6 (2)
C7—O1—C8106.13 (18)C10—C9—C8120.3 (2)
C8—C1—C2107.4 (2)C11—C10—C9121.0 (2)
C8—C1—S125.10 (19)C11—C10—H10119.5
C2—C1—S127.23 (18)C9—C10—H10119.5
C7—C2—C3119.1 (2)C10—C11—C12119.2 (2)
C7—C2—C1105.1 (2)C10—C11—H11120.4
C3—C2—C1135.9 (2)C12—C11—H11120.4
C4—C3—C2116.3 (2)C13—C12—C11120.5 (2)
C4—C3—H3121.9C13—C12—I119.62 (17)
C2—C3—H3121.9C11—C12—I119.79 (18)
F—C4—C3118.3 (2)C14—C13—C12119.9 (2)
F—C4—C5117.1 (2)C14—C13—H13120.1
C3—C4—C5124.5 (2)C12—C13—H13120.1
C6—C5—C4119.6 (2)C13—C14—C9120.5 (2)
C6—C5—H5120.2C13—C14—H14119.8
C4—C5—H5120.2C9—C14—H14119.8
C7—C6—C5116.2 (2)S—C15—H15A109.5
C7—C6—H6121.9S—C15—H15B109.5
C5—C6—H6121.9H15A—C15—H15B109.5
O1—C7—C6125.1 (2)S—C15—H15C109.5
O1—C7—C2110.6 (2)H15A—C15—H15C109.5
C6—C7—C2124.3 (2)H15B—C15—H15C109.5
C1—C8—O1110.7 (2)
O2—S—C1—C8−132.7 (2)C2—C1—C8—O10.0 (3)
C15—S—C1—C8116.8 (2)S—C1—C8—O1174.65 (16)
O2—S—C1—C240.9 (2)C2—C1—C8—C9176.3 (3)
C15—S—C1—C2−69.7 (2)S—C1—C8—C9−9.1 (4)
C8—C1—C2—C70.0 (3)C7—O1—C8—C10.0 (3)
S—C1—C2—C7−174.51 (18)C7—O1—C8—C9−177.1 (2)
C8—C1—C2—C3−179.9 (3)C1—C8—C9—C14−37.3 (4)
S—C1—C2—C35.6 (4)O1—C8—C9—C14138.8 (2)
C7—C2—C3—C4−1.4 (3)C1—C8—C9—C10146.1 (3)
C1—C2—C3—C4178.5 (3)O1—C8—C9—C10−37.8 (3)
C2—C3—C4—F179.6 (2)C14—C9—C10—C11−1.4 (4)
C2—C3—C4—C50.5 (4)C8—C9—C10—C11175.2 (2)
F—C4—C5—C6−178.4 (2)C9—C10—C11—C120.1 (4)
C3—C4—C5—C60.7 (4)C10—C11—C12—C130.8 (4)
C4—C5—C6—C7−1.0 (4)C10—C11—C12—I−175.29 (19)
C8—O1—C7—C6178.8 (2)O2i—I—C12—C13−117.3 (3)
C8—O1—C7—C20.0 (2)O2i—I—C12—C1158.8 (4)
C5—C6—C7—O1−178.5 (2)C11—C12—C13—C14−0.4 (4)
C5—C6—C7—C20.1 (4)I—C12—C13—C14175.70 (18)
C3—C2—C7—O1179.9 (2)C12—C13—C14—C9−1.0 (4)
C1—C2—C7—O10.0 (3)C10—C9—C14—C131.8 (4)
C3—C2—C7—C61.1 (4)C8—C9—C14—C13−174.8 (2)
C1—C2—C7—C6−178.8 (2)
D—H···AD—HH···AD···AD—H···A
C15—H15C···O2ii0.962.423.238 (3)143
C15—H15B···Cg3iii0.962.913.554 (3)126
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15C⋯O2i0.962.423.238 (3)143
C15—H15BCg3ii0.962.913.554 (3)126

Symmetry codes: (i) ; (ii) . Cg3 is the centroid of the C9–C14 benzene ring.

  5 in total

1.  Inhibition of fibril formation in beta-amyloid peptide by a novel series of benzofurans.

Authors:  D R Howlett; A E Perry; F Godfrey; J E Swatton; K H Jennings; C Spitzfaden; H Wadsworth; S J Wood; R E Markwell
Journal:  Biochem J       Date:  1999-05-15       Impact factor: 3.857

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  An overview of halogen bonding.

Authors:  Peter Politzer; Pat Lane; Monica C Concha; Yuguang Ma; Jane S Murray
Journal:  J Mol Model       Date:  2006-09-30       Impact factor: 1.810

4.  2-(4-Iodo-phen-yl)-5,7-dimethyl-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-17

5.  2-(4-Iodo-phen-yl)-5-methyl-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-10
  5 in total
  4 in total

1.  5-Chloro-2-(4-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

2.  2-(4-Chloro-phen-yl)-5-fluoro-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-16

3.  5-Fluoro-2-(4-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

4.  5-Fluoro-2-(4-methyl-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-14
  4 in total

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