Literature DB >> 21202603

2-(4-Iodo-phen-yl)-5,7-dimethyl-3-methyl-sulfinyl-1-benzofuran.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

The title compound, C(17)H(15)IO(2)S, was prepared by the oxidation of 2-(4-iodo-phen-yl)-5,7-dimethyl-3-methyl-sulfanyl-1-benzofuran using 3-chloro-peroxy-benzoic acid. The 4-iodo-phenyl ring makes a dihedral angle of 26.0 (1)° with the plane of the benzofuran fragment, and the O atom and the methyl group of the methyl-sulfinyl substituent lie on opposite sides of this plane. The crystal structure is stabilized by inter- and intra-molecular C-H⋯O hydrogen bonds, and by an I⋯O halogen bond with an I⋯O distance of 3.145 (2) Å and a nearly linear C-I⋯O angle of 164.01 (9)°.

Entities:  

Year:  2008        PMID: 21202603      PMCID: PMC2961519          DOI: 10.1107/S1600536808014104

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar 2-aryl-3-methyl­sulfinyl-1-benzofuran compounds, see: Choi et al. (2007a ▶,b ▶). For a review of halogen bonding, see: Politzer et al. (2007 ▶).

Experimental

Crystal data

C17H15IO2S M = 410.25 Triclinic, a = 8.6320 (9) Å b = 8.917 (1) Å c = 11.638 (1) Å α = 94.580 (2)° β = 100.949 (2)° γ = 113.725 (2)° V = 792.90 (14) Å3 Z = 2 Mo Kα radiation μ = 2.15 mm−1 T = 293 (2) K 0.40 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.594, T max = 0.647 6882 measured reflections 3408 independent reflections 3214 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.080 S = 1.22 3408 reflections 192 parameters H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.66 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808014104/zl2115sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808014104/zl2115Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15IO2SZ = 2
Mr = 410.25F000 = 404
Triclinic, P1Dx = 1.718 Mg m3
Hall symbol: -p_1Melting point = 450–451 K
a = 8.6320 (9) ÅMo Kα radiation λ = 0.71069 Å
b = 8.917 (1) ÅCell parameters from 5631 reflections
c = 11.638 (1) Åθ = 2.5–28.3º
α = 94.580 (2)ºµ = 2.15 mm1
β = 100.949 (2)ºT = 293 (2) K
γ = 113.725 (2)ºBlock, colorless
V = 792.90 (14) Å30.40 × 0.20 × 0.20 mm
Bruker SMART CCD diffractometer3408 independent reflections
Radiation source: fine-focus sealed tube3214 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.029
Detector resolution: 10.0 pixels mm-1θmax = 27.0º
T = 293(2) Kθmin = 1.8º
φ and ω scansh = −11→10
Absorption correction: multi-scan(SADABS; Sheldrick, 2000)k = −11→11
Tmin = 0.594, Tmax = 0.647l = −14→14
6882 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.025H-atom parameters constrained
wR(F2) = 0.080  w = 1/[σ2(Fo2) + (0.0374P)2 + 0.4132P] where P = (Fo2 + 2Fc2)/3
S = 1.22(Δ/σ)max = 0.001
3408 reflectionsΔρmax = 0.50 e Å3
192 parametersΔρmin = −0.66 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I0.26443 (2)0.23987 (2)−0.006964 (16)0.03233 (9)
S0.10120 (10)0.19886 (8)0.60394 (7)0.02931 (16)
O10.3173 (3)0.6586 (2)0.54519 (18)0.0262 (4)
O20.2055 (3)0.1813 (3)0.7150 (2)0.0374 (5)
C10.1717 (4)0.4134 (3)0.6002 (3)0.0262 (6)
C20.2089 (4)0.5443 (3)0.6979 (3)0.0259 (5)
C30.1802 (4)0.5533 (4)0.8114 (3)0.0294 (6)
H30.11970.45690.83930.035*
C40.2430 (4)0.7078 (4)0.8822 (3)0.0309 (6)
C50.3335 (4)0.8521 (4)0.8378 (3)0.0307 (6)
H50.37380.95480.88620.037*
C60.3655 (4)0.8489 (4)0.7256 (3)0.0282 (6)
C70.2995 (4)0.6914 (3)0.6586 (3)0.0256 (6)
C80.2386 (4)0.4876 (3)0.5117 (3)0.0256 (5)
C90.2460 (4)0.4269 (3)0.3936 (2)0.0247 (5)
C100.1189 (4)0.2744 (4)0.3281 (3)0.0286 (6)
H100.02800.20980.35990.034*
C110.1279 (4)0.2191 (4)0.2158 (3)0.0292 (6)
H110.04380.11690.17280.035*
C120.2623 (4)0.3162 (4)0.1674 (3)0.0268 (6)
C130.3902 (4)0.4699 (4)0.2319 (3)0.0289 (6)
H130.48030.53480.19970.035*
C140.3811 (4)0.5239 (3)0.3437 (3)0.0274 (6)
H140.46560.62590.38660.033*
C150.2162 (5)0.7226 (5)1.0062 (3)0.0416 (8)
H15A0.09370.67061.00290.062*
H15B0.26330.83801.04090.062*
H15C0.27450.66871.05380.062*
C160.4651 (4)1.0036 (4)0.6797 (3)0.0387 (7)
H16A0.39791.06710.66820.058*
H16B0.48670.97300.60540.058*
H16C0.57421.06930.73620.058*
C17−0.1093 (4)0.1531 (4)0.6283 (4)0.0471 (9)
H17A−0.16750.03680.63140.071*
H17B−0.17640.18010.56460.071*
H17C−0.09760.21760.70220.071*
U11U22U33U12U13U23
I0.03823 (13)0.03425 (13)0.02494 (12)0.01616 (9)0.00863 (8)0.00135 (8)
S0.0364 (4)0.0219 (3)0.0299 (4)0.0120 (3)0.0091 (3)0.0058 (3)
O10.0313 (10)0.0209 (9)0.0256 (10)0.0103 (8)0.0077 (8)0.0028 (8)
O20.0405 (12)0.0360 (12)0.0384 (13)0.0193 (10)0.0058 (10)0.0135 (10)
C10.0298 (13)0.0227 (13)0.0263 (14)0.0123 (11)0.0052 (11)0.0037 (11)
C20.0287 (13)0.0234 (13)0.0264 (14)0.0126 (11)0.0052 (11)0.0045 (11)
C30.0312 (14)0.0304 (14)0.0289 (15)0.0145 (12)0.0085 (12)0.0075 (12)
C40.0295 (14)0.0385 (16)0.0265 (15)0.0166 (13)0.0069 (11)0.0027 (12)
C50.0298 (14)0.0269 (14)0.0318 (15)0.0109 (12)0.0050 (12)−0.0023 (12)
C60.0240 (13)0.0253 (13)0.0339 (15)0.0100 (11)0.0068 (11)0.0011 (11)
C70.0254 (13)0.0250 (13)0.0264 (14)0.0117 (11)0.0049 (11)0.0031 (11)
C80.0260 (13)0.0219 (13)0.0269 (14)0.0097 (10)0.0032 (11)0.0036 (11)
C90.0271 (13)0.0237 (13)0.0224 (13)0.0114 (11)0.0031 (10)0.0042 (10)
C100.0275 (13)0.0271 (14)0.0272 (14)0.0077 (11)0.0060 (11)0.0051 (11)
C110.0294 (14)0.0248 (13)0.0257 (14)0.0067 (11)0.0017 (11)0.0000 (11)
C120.0299 (14)0.0283 (14)0.0233 (13)0.0150 (11)0.0038 (11)0.0031 (11)
C130.0293 (14)0.0277 (14)0.0296 (15)0.0109 (11)0.0091 (12)0.0069 (11)
C140.0276 (13)0.0227 (13)0.0271 (14)0.0078 (11)0.0037 (11)0.0017 (11)
C150.0498 (19)0.0454 (18)0.0279 (17)0.0184 (15)0.0118 (15)0.0014 (14)
C160.0398 (17)0.0259 (15)0.0469 (19)0.0079 (13)0.0182 (15)0.0024 (14)
C170.0318 (16)0.0336 (17)0.076 (3)0.0111 (14)0.0151 (17)0.0201 (18)
I—C122.094 (3)C9—C101.396 (4)
I—O2i3.145 (2)C9—C141.404 (4)
S—O21.486 (2)C10—C111.387 (4)
S—C11.766 (3)C10—H100.9300
S—C171.780 (4)C11—C121.390 (4)
O1—C71.379 (3)C11—H110.9300
O1—C81.382 (3)C12—C131.401 (4)
C1—C81.364 (4)C13—C141.378 (4)
C1—C21.452 (4)C13—H130.9300
C2—C31.391 (4)C14—H140.9300
C2—C71.396 (4)C15—H15A0.9600
C3—C41.385 (4)C15—H15B0.9600
C3—H30.9300C15—H15C0.9600
C4—C51.409 (4)C16—H16A0.9600
C4—C151.508 (4)C16—H16B0.9600
C5—C61.385 (4)C16—H16C0.9600
C5—H50.9300C17—H17A0.9600
C6—C71.385 (4)C17—H17B0.9600
C6—C161.505 (4)C17—H17C0.9600
C8—C91.459 (4)
C12—I—O2i164.01 (9)C11—C10—H10119.9
O2—S—C1107.81 (13)C9—C10—H10119.9
O2—S—C17105.98 (17)C10—C11—C12120.1 (3)
C1—S—C1799.04 (15)C10—C11—H11119.9
C7—O1—C8106.5 (2)C12—C11—H11119.9
C8—C1—C2107.5 (2)C11—C12—C13120.3 (3)
C8—C1—S123.8 (2)C11—C12—I119.8 (2)
C2—C1—S127.1 (2)C13—C12—I119.8 (2)
C3—C2—C7119.0 (3)C14—C13—C12119.4 (3)
C3—C2—C1136.5 (3)C14—C13—H13120.3
C7—C2—C1104.5 (2)C12—C13—H13120.3
C4—C3—C2119.1 (3)C13—C14—C9120.9 (3)
C4—C3—H3120.5C13—C14—H14119.5
C2—C3—H3120.5C9—C14—H14119.5
C3—C4—C5119.4 (3)C4—C15—H15A109.5
C3—C4—C15120.7 (3)C4—C15—H15B109.5
C5—C4—C15119.9 (3)H15A—C15—H15B109.5
C6—C5—C4123.4 (3)C4—C15—H15C109.5
C6—C5—H5118.3H15A—C15—H15C109.5
C4—C5—H5118.3H15B—C15—H15C109.5
C7—C6—C5114.7 (3)C6—C16—H16A109.5
C7—C6—C16122.2 (3)C6—C16—H16B109.5
C5—C6—C16123.0 (3)H16A—C16—H16B109.5
O1—C7—C6124.7 (3)C6—C16—H16C109.5
O1—C7—C2110.9 (2)H16A—C16—H16C109.5
C6—C7—C2124.4 (3)H16B—C16—H16C109.5
C1—C8—O1110.5 (2)S—C17—H17A109.5
C1—C8—C9134.5 (3)S—C17—H17B109.5
O1—C8—C9115.0 (2)H17A—C17—H17B109.5
C10—C9—C14119.2 (3)S—C17—H17C109.5
C10—C9—C8121.0 (3)H17A—C17—H17C109.5
C14—C9—C8119.8 (2)H17B—C17—H17C109.5
C11—C10—C9120.1 (3)
O2—S—C1—C8120.8 (3)C1—C2—C7—O10.7 (3)
C17—S—C1—C8−129.1 (3)C3—C2—C7—C60.5 (4)
O2—S—C1—C2−43.3 (3)C1—C2—C7—C6−178.1 (3)
C17—S—C1—C266.8 (3)C2—C1—C8—O10.1 (3)
C8—C1—C2—C3−178.7 (3)S—C1—C8—O1−166.67 (19)
S—C1—C2—C3−12.5 (5)C2—C1—C8—C9179.4 (3)
C8—C1—C2—C7−0.5 (3)S—C1—C8—C912.6 (5)
S—C1—C2—C7165.7 (2)C7—O1—C8—C10.4 (3)
C7—C2—C3—C4−0.3 (4)C7—O1—C8—C9−179.1 (2)
C1—C2—C3—C4177.8 (3)C1—C8—C9—C1027.6 (5)
C2—C3—C4—C50.3 (4)O1—C8—C9—C10−153.1 (3)
C2—C3—C4—C15−179.4 (3)C1—C8—C9—C14−153.4 (3)
C3—C4—C5—C6−0.6 (5)O1—C8—C9—C1425.9 (4)
C15—C4—C5—C6179.1 (3)C14—C9—C10—C110.8 (4)
C4—C5—C6—C70.7 (4)C8—C9—C10—C11179.8 (3)
C4—C5—C6—C16−178.9 (3)C9—C10—C11—C12−0.8 (4)
C8—O1—C7—C6178.1 (3)C10—C11—C12—C130.4 (4)
C8—O1—C7—C2−0.7 (3)C10—C11—C12—I−175.5 (2)
C5—C6—C7—O1−179.4 (3)C11—C12—C13—C14−0.1 (4)
C16—C6—C7—O10.2 (5)I—C12—C13—C14175.8 (2)
C5—C6—C7—C2−0.7 (4)C12—C13—C14—C90.2 (4)
C16—C6—C7—C2178.9 (3)C10—C9—C14—C13−0.5 (4)
C3—C2—C7—O1179.3 (2)C8—C9—C14—C13−179.5 (3)
D—H···AD—HH···AD···AD—H···A
C16—H16B···O10.962.552.975 (4)107
C16—H16A···O2ii0.962.393.288 (4)156
C17—H17B···O1iii0.962.513.422 (4)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C16—H16B⋯O10.962.552.975 (4)107
C16—H16A⋯O2i0.962.393.288 (4)156
C17—H17B⋯O1ii0.962.513.422 (4)159

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An overview of halogen bonding.

Authors:  Peter Politzer; Pat Lane; Monica C Concha; Yuguang Ma; Jane S Murray
Journal:  J Mol Model       Date:  2006-09-30       Impact factor: 1.810

  2 in total
  1 in total

1.  5-Fluoro-2-(4-iodo-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.