Literature DB >> 23476176

5-Fluoro-2-(4-methyl-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Hong Dae Choi1, Pil Ja Seo, Uk Lee.   

Abstract

In the title compound, C16H13FO2S, the 4-methyl-phenyl ring makes a dihedral angle of 29.53 (4)° with the mean plane of the benzofuran fragment [r.m.s. deviation = 0.004 (1) Å]. In the crystal, mol-ecules are linked by pairs of weak C-H⋯O hydrogen bonds, forming inversion dimers that stack along the a axis.

Entities:  

Year:  2012        PMID: 23476176      PMCID: PMC3588940          DOI: 10.1107/S1600536812044844

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information and the crystal structures of related compounds, see: Choi et al. (2009a ▶,b ▶).

Experimental

Crystal data

C16H13FO2S M = 288.32 Triclinic, a = 8.0407 (2) Å b = 8.0838 (2) Å c = 11.3517 (2) Å α = 80.126 (1)° β = 85.091 (1)° γ = 66.773 (1)° V = 667.88 (3) Å3 Z = 2 Mo Kα radiation μ = 0.25 mm−1 T = 173 K 0.53 × 0.40 × 0.24 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.701, T max = 0.746 12234 measured reflections 3307 independent reflections 3095 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.091 S = 1.09 3307 reflections 183 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812044844/su2522sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812044844/su2522Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812044844/su2522Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13FO2SZ = 2
Mr = 288.32F(000) = 300
Triclinic, P1Dx = 1.434 Mg m3
Hall symbol: -P 1Melting point < 418 K
a = 8.0407 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.0838 (2) ÅCell parameters from 7852 reflections
c = 11.3517 (2) Åθ = 2.8–28.3°
α = 80.126 (1)°µ = 0.25 mm1
β = 85.091 (1)°T = 173 K
γ = 66.773 (1)°Block, colourless
V = 667.88 (3) Å30.53 × 0.40 × 0.24 mm
Bruker SMART APEXII CCD diffractometer3307 independent reflections
Radiation source: rotating anode3095 reflections with I > 2σ(I)
Graphite multilayer monochromatorRint = 0.020
Detector resolution: 10.0 pixels mm-1θmax = 28.3°, θmin = 1.8°
φ and ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −10→10
Tmin = 0.701, Tmax = 0.746l = −15→15
12234 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: difference Fourier map
wR(F2) = 0.091H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0463P)2 + 0.2225P] where P = (Fo2 + 2Fc2)/3
3307 reflections(Δ/σ)max < 0.001
183 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.33118 (4)0.20343 (4)0.41621 (3)0.02410 (10)
O10.15249 (12)0.70005 (11)0.50374 (7)0.02400 (18)
F1−0.01539 (13)0.79204 (12)0.03932 (7)0.0428 (2)
O20.21524 (13)0.17958 (13)0.33018 (10)0.0378 (2)
C10.24601 (16)0.43759 (15)0.42709 (10)0.0221 (2)
C90.30709 (16)0.43979 (16)0.64794 (10)0.0223 (2)
C80.23981 (16)0.51353 (15)0.52688 (10)0.0221 (2)
C70.10062 (16)0.74208 (16)0.38628 (10)0.0226 (2)
C100.46136 (17)0.28077 (17)0.67089 (11)0.0260 (2)
H100.52460.21850.60680.031*
C20.15628 (16)0.58455 (15)0.33364 (10)0.0221 (2)
C140.21693 (17)0.53140 (17)0.74329 (11)0.0260 (2)
H140.11170.64010.72920.031*
C30.11782 (17)0.59876 (17)0.21373 (11)0.0267 (2)
H30.15270.49500.17450.032*
C120.43513 (19)0.30326 (18)0.88157 (11)0.0294 (3)
C110.52340 (18)0.21267 (18)0.78664 (11)0.0292 (3)
H110.62740.10290.80110.035*
C60.01006 (17)0.91590 (17)0.32716 (11)0.0274 (3)
H6−0.02441.02020.36580.033*
C130.28174 (19)0.46301 (18)0.85797 (11)0.0299 (3)
H130.22030.52640.92210.036*
C5−0.02757 (18)0.92941 (18)0.20837 (12)0.0303 (3)
H5−0.08991.04520.16290.036*
C160.53640 (17)0.19025 (18)0.33560 (12)0.0293 (3)
H16A0.59510.07080.30920.044*
H16B0.61780.20690.38770.044*
H16C0.50850.28590.26570.044*
C40.02649 (18)0.77212 (19)0.15608 (11)0.0297 (3)
C150.5046 (2)0.2319 (2)1.00707 (13)0.0438 (4)
H15A0.61360.12001.00670.066*
H15B0.41140.20571.05890.066*
H15C0.53410.32351.03710.066*
U11U22U33U12U13U23
S10.02488 (16)0.01864 (15)0.02810 (16)−0.00752 (11)0.00168 (11)−0.00507 (11)
O10.0276 (4)0.0198 (4)0.0228 (4)−0.0066 (3)−0.0014 (3)−0.0045 (3)
F10.0568 (6)0.0438 (5)0.0221 (4)−0.0142 (4)−0.0091 (4)0.0014 (3)
O20.0297 (5)0.0315 (5)0.0574 (6)−0.0110 (4)−0.0052 (4)−0.0204 (5)
C10.0231 (5)0.0196 (5)0.0228 (5)−0.0074 (4)0.0002 (4)−0.0038 (4)
C90.0237 (5)0.0230 (5)0.0216 (5)−0.0105 (4)−0.0004 (4)−0.0035 (4)
C80.0218 (5)0.0197 (5)0.0238 (5)−0.0070 (4)0.0009 (4)−0.0037 (4)
C70.0227 (5)0.0229 (5)0.0221 (5)−0.0087 (4)−0.0005 (4)−0.0037 (4)
C100.0249 (6)0.0278 (6)0.0240 (6)−0.0082 (5)0.0001 (4)−0.0060 (4)
C20.0217 (5)0.0209 (5)0.0234 (5)−0.0081 (4)0.0006 (4)−0.0031 (4)
C140.0275 (6)0.0244 (6)0.0260 (6)−0.0094 (5)0.0015 (5)−0.0060 (4)
C30.0301 (6)0.0275 (6)0.0231 (5)−0.0115 (5)−0.0002 (5)−0.0047 (4)
C120.0354 (7)0.0332 (6)0.0232 (6)−0.0173 (5)−0.0050 (5)−0.0020 (5)
C110.0267 (6)0.0289 (6)0.0290 (6)−0.0077 (5)−0.0050 (5)−0.0017 (5)
C60.0271 (6)0.0214 (5)0.0310 (6)−0.0069 (5)−0.0005 (5)−0.0033 (5)
C130.0362 (7)0.0327 (6)0.0233 (6)−0.0150 (6)0.0024 (5)−0.0083 (5)
C50.0295 (6)0.0250 (6)0.0308 (6)−0.0070 (5)−0.0031 (5)0.0031 (5)
C160.0263 (6)0.0314 (6)0.0305 (6)−0.0105 (5)0.0036 (5)−0.0091 (5)
C40.0324 (6)0.0342 (7)0.0210 (5)−0.0125 (5)−0.0030 (5)−0.0002 (5)
C150.0576 (10)0.0467 (9)0.0260 (7)−0.0186 (8)−0.0123 (6)−0.0012 (6)
S1—O21.4907 (10)C3—C41.3738 (18)
S1—C11.7637 (11)C3—H30.9500
S1—C161.7911 (13)C12—C111.3897 (18)
O1—C71.3767 (14)C12—C131.3937 (19)
O1—C81.3770 (14)C12—C151.5082 (17)
F1—C41.3625 (14)C11—H110.9500
C1—C81.3665 (16)C6—C51.3839 (18)
C1—C21.4422 (16)C6—H60.9500
C9—C101.3935 (17)C13—H130.9500
C9—C141.4009 (16)C5—C41.3917 (19)
C9—C81.4589 (16)C5—H50.9500
C7—C61.3814 (16)C16—H16A0.9800
C7—C21.3945 (16)C16—H16B0.9800
C10—C111.3878 (17)C16—H16C0.9800
C10—H100.9500C15—H15A0.9800
C2—C31.3971 (16)C15—H15B0.9800
C14—C131.3835 (17)C15—H15C0.9800
C14—H140.9500
O2—S1—C1106.91 (6)C11—C12—C15120.89 (13)
O2—S1—C16105.80 (6)C13—C12—C15120.67 (12)
C1—S1—C1697.50 (6)C10—C11—C12120.76 (12)
C7—O1—C8106.64 (9)C10—C11—H11119.6
C8—C1—C2107.14 (10)C12—C11—H11119.6
C8—C1—S1126.89 (9)C7—C6—C5116.19 (11)
C2—C1—S1125.80 (9)C7—C6—H6121.9
C10—C9—C14118.99 (11)C5—C6—H6121.9
C10—C9—C8121.35 (10)C14—C13—C12121.48 (12)
C14—C9—C8119.65 (11)C14—C13—H13119.3
C1—C8—O1110.59 (10)C12—C13—H13119.3
C1—C8—C9133.89 (11)C6—C5—C4119.51 (12)
O1—C8—C9115.52 (10)C6—C5—H5120.2
O1—C7—C6125.11 (11)C4—C5—H5120.2
O1—C7—C2110.54 (10)S1—C16—H16A109.5
C6—C7—C2124.33 (11)S1—C16—H16B109.5
C11—C10—C9120.55 (11)H16A—C16—H16B109.5
C11—C10—H10119.7S1—C16—H16C109.5
C9—C10—H10119.7H16A—C16—H16C109.5
C7—C2—C3119.30 (11)H16B—C16—H16C109.5
C7—C2—C1105.09 (10)F1—C4—C3117.81 (12)
C3—C2—C1135.61 (11)F1—C4—C5117.39 (11)
C13—C14—C9119.77 (12)C3—C4—C5124.80 (12)
C13—C14—H14120.1C12—C15—H15A109.5
C9—C14—H14120.1C12—C15—H15B109.5
C4—C3—C2115.87 (11)H15A—C15—H15B109.5
C4—C3—H3122.1C12—C15—H15C109.5
C2—C3—H3122.1H15A—C15—H15C109.5
C11—C12—C13118.44 (11)H15B—C15—H15C109.5
O2—S1—C1—C8144.62 (11)C8—C1—C2—C7−0.31 (13)
C16—S1—C1—C8−106.28 (12)S1—C1—C2—C7175.22 (9)
O2—S1—C1—C2−30.03 (12)C8—C1—C2—C3179.87 (13)
C16—S1—C1—C279.07 (11)S1—C1—C2—C3−4.6 (2)
C2—C1—C8—O1−0.23 (13)C10—C9—C14—C13−0.10 (18)
S1—C1—C8—O1−175.69 (8)C8—C9—C14—C13−179.19 (11)
C2—C1—C8—C9−179.10 (12)C7—C2—C3—C40.33 (17)
S1—C1—C8—C95.4 (2)C1—C2—C3—C4−179.86 (13)
C7—O1—C8—C10.68 (13)C9—C10—C11—C12−1.2 (2)
C7—O1—C8—C9179.78 (9)C13—C12—C11—C100.7 (2)
C10—C9—C8—C129.5 (2)C15—C12—C11—C10−178.63 (13)
C14—C9—C8—C1−151.45 (13)O1—C7—C6—C5179.08 (11)
C10—C9—C8—O1−149.35 (11)C2—C7—C6—C50.79 (19)
C14—C9—C8—O129.72 (15)C9—C14—C13—C12−0.41 (19)
C8—O1—C7—C6−179.38 (11)C11—C12—C13—C140.1 (2)
C8—O1—C7—C2−0.89 (13)C15—C12—C13—C14179.43 (13)
C14—C9—C10—C110.90 (18)C7—C6—C5—C4−0.17 (19)
C8—C9—C10—C11179.98 (11)C2—C3—C4—F1−179.35 (11)
O1—C7—C2—C3−179.40 (10)C2—C3—C4—C50.3 (2)
C6—C7—C2—C3−0.90 (18)C6—C5—C4—F1179.26 (12)
O1—C7—C2—C10.74 (13)C6—C5—C4—C3−0.4 (2)
C6—C7—C2—C1179.25 (11)
D—H···AD—HH···AD···AD—H···A
C14—H14···O2i0.952.543.4138 (16)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C14—H14⋯O2i 0.952.543.4138 (16)154

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(4-Bromo-phen-yl)-5-fluoro-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

3.  5-Fluoro-2-(4-iodo-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08
  3 in total
  1 in total

1.  5-Fluoro-2-(2-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzo-furan.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-06-25
  1 in total

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