Literature DB >> 23723936

(4aR,9R,9aR)-7-Bromo-9-nitro-methyl-2,3,4,4a,9,9a-hexa-hydro-1H-xanthen-1-one.

Chao Wu1, Yan-Jun Guo, Ai-Bao Xia.   

Abstract

The title compound, C14H14BrNO4, contains a tricyclic ring system including three contiguous stereocenters all of which exhibit an R configuration. The cyclo-hexa-none ring adopts a chair conformation. The central oxane ring assumes a strained envelope conformation, with five of the ring atoms being nearly coplanar with the bromo-phenyl group and with the C atom adjacent to the O atom and fused with the cyclo-hexa-none ring as the flap. In the crystal, mol-ecules are linked into a three-dimensional network by C-H⋯O inter-actions.

Entities:  

Year:  2013        PMID: 23723936      PMCID: PMC3648316          DOI: 10.1107/S1600536813008659

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Shi et al. (2004 ▶); Xia et al. (2009 ▶); Ndjakou Lenta et al. (2007 ▶). For background information on domino reactions, see Enders et al. (2007 ▶); Yu & Wang (2002 ▶).

Experimental

Crystal data

C14H14BrNO4 M = 340.17 Monoclinic, a = 10.3457 (7) Å b = 5.4662 (5) Å c = 13.2446 (12) Å β = 102.849 (2)° V = 730.25 (11) Å3 Z = 2 Mo Kα radiation μ = 2.83 mm−1 T = 296 K 0.53 × 0.47 × 0.14 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.224, T max = 0.673 6335 measured reflections 2655 independent reflections 1537 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.137 S = 1.00 2655 reflections 181 parameters 1 restraint H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.46 e Å−3 Absolute structure: Flack (1983 ▶), 1058 Friedel pairs Flack parameter: 0.021 (17) Data collection: PROCESS-AUTO (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813008659/fy2090sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813008659/fy2090Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813008659/fy2090Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H14BrNO4F(000) = 344
Mr = 340.17Dx = 1.547 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 4391 reflections
a = 10.3457 (7) Åθ = 3.2–27.4°
b = 5.4662 (5) ŵ = 2.83 mm1
c = 13.2446 (12) ÅT = 296 K
β = 102.849 (2)°Platelet, colorless
V = 730.25 (11) Å30.53 × 0.47 × 0.14 mm
Z = 2
Rigaku R-AXIS RAPID diffractometer2655 independent reflections
Radiation source: rotating anode1537 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.061
Detector resolution: 10.00 pixels mm-1θmax = 26.0°, θmin = 3.2°
ω scansh = −12→12
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −6→6
Tmin = 0.224, Tmax = 0.673l = −16→16
6335 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H-atom parameters constrained
wR(F2) = 0.137w = 1/[σ2(Fo2) + (0.0525P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
2655 reflectionsΔρmax = 0.36 e Å3
181 parametersΔρmin = −0.46 e Å3
1 restraintAbsolute structure: Flack (1983), 1058 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.021 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1121 (7)0.9599 (12)0.3568 (5)0.0740 (18)
C20.2242 (7)0.9776 (13)0.4388 (6)0.084 (2)
H20.22011.06580.49800.101*
C30.3408 (7)0.8631 (13)0.4308 (5)0.079 (2)
H30.41540.87570.48470.095*
C40.3469 (5)0.7291 (10)0.3426 (5)0.0575 (14)
C50.4665 (5)0.4397 (10)0.2629 (5)0.0594 (15)
H50.42120.29170.27850.071*
C60.6112 (5)0.3829 (12)0.2656 (6)0.074 (2)
H6A0.65350.32220.33370.089*
H6B0.61600.25550.21560.089*
C70.6840 (5)0.6043 (15)0.2415 (5)0.0816 (19)
H7A0.77410.55880.23970.098*
H7B0.68820.72440.29600.098*
C80.6170 (5)0.7183 (13)0.1378 (6)0.077 (2)
H8A0.65990.87220.12920.092*
H8B0.62730.61010.08200.092*
C90.4716 (5)0.7627 (10)0.1311 (4)0.0553 (14)
C100.3944 (4)0.5445 (8)0.1576 (4)0.0461 (12)
H100.39450.41830.10500.055*
C110.2504 (4)0.6049 (10)0.1573 (4)0.0487 (12)
H110.21960.72660.10290.058*
C120.2391 (5)0.7152 (9)0.2586 (5)0.0518 (14)
C130.1217 (6)0.8341 (11)0.2703 (5)0.0650 (16)
H130.04730.82550.21600.078*
C140.1623 (5)0.3767 (10)0.1314 (5)0.0572 (15)
H14A0.20380.24030.17320.069*
H14B0.07730.40730.14850.069*
N10.1410 (4)0.3111 (10)0.0188 (5)0.0621 (14)
O10.4667 (3)0.6210 (10)0.3413 (3)0.0647 (10)
O20.4213 (4)0.9576 (7)0.1075 (4)0.0745 (13)
O30.1104 (4)0.0988 (9)−0.0041 (4)0.1026 (17)
O40.1497 (5)0.4689 (10)−0.0439 (4)0.0874 (14)
Br1−0.04348 (7)1.1196 (2)0.36550 (7)0.1208 (5)
U11U22U33U12U13U23
C10.094 (4)0.080 (4)0.048 (5)0.010 (3)0.015 (4)−0.003 (4)
C20.096 (5)0.101 (5)0.057 (5)0.017 (4)0.022 (4)−0.021 (4)
C30.091 (5)0.100 (5)0.042 (4)0.014 (4)0.003 (3)−0.012 (4)
C40.064 (3)0.065 (3)0.044 (4)0.008 (3)0.015 (3)0.007 (3)
C50.063 (3)0.065 (3)0.050 (4)0.008 (3)0.011 (3)0.009 (3)
C60.045 (3)0.093 (4)0.078 (5)0.008 (3)−0.002 (3)−0.024 (4)
C70.046 (3)0.098 (5)0.096 (5)0.001 (4)0.004 (3)−0.019 (5)
C80.069 (4)0.080 (4)0.087 (6)0.000 (3)0.029 (4)−0.008 (4)
C90.066 (3)0.061 (4)0.037 (4)−0.004 (3)0.008 (3)−0.005 (3)
C100.053 (2)0.047 (3)0.039 (3)0.000 (2)0.011 (2)−0.009 (2)
C110.057 (2)0.044 (2)0.044 (3)−0.002 (3)0.009 (2)0.005 (3)
C120.053 (3)0.054 (3)0.050 (4)0.003 (2)0.013 (2)0.006 (2)
C130.070 (3)0.066 (4)0.059 (5)−0.001 (3)0.013 (3)0.010 (3)
C140.047 (3)0.056 (3)0.069 (5)−0.006 (2)0.013 (3)0.001 (3)
N10.037 (2)0.072 (3)0.073 (4)0.011 (2)0.002 (2)−0.010 (3)
O10.063 (2)0.086 (2)0.040 (2)0.016 (2)0.0012 (16)−0.008 (2)
O20.084 (3)0.056 (2)0.083 (4)−0.013 (2)0.017 (2)0.011 (2)
O30.097 (3)0.070 (3)0.123 (4)−0.004 (3)−0.015 (3)−0.040 (3)
O40.104 (3)0.105 (4)0.052 (3)−0.013 (3)0.013 (3)−0.012 (3)
Br10.1011 (5)0.1479 (8)0.1168 (8)0.0504 (6)0.0314 (5)−0.0231 (7)
C1—C131.359 (9)C7—H7B0.9700
C1—C21.405 (9)C8—C91.506 (8)
C1—Br11.857 (6)C8—H8A0.9700
C2—C31.383 (8)C8—H8B0.9700
C2—H20.9300C9—O21.196 (6)
C3—C41.393 (8)C9—C101.519 (7)
C3—H30.9300C10—C111.525 (6)
C4—O11.376 (6)C10—H100.9800
C4—C121.391 (7)C11—C121.499 (7)
C5—O11.435 (8)C11—C141.538 (7)
C5—C61.521 (7)C11—H110.9800
C5—C101.538 (8)C12—C131.417 (7)
C5—H50.9800C13—H130.9300
C6—C71.497 (10)C14—N11.502 (8)
C6—H6A0.9700C14—H14A0.9700
C6—H6B0.9700C14—H14B0.9700
C7—C81.527 (9)N1—O41.214 (6)
C7—H7A0.9700N1—O31.223 (7)
C13—C1—C2119.0 (6)C7—C8—H8B109.3
C13—C1—Br1121.1 (5)H8A—C8—H8B108.0
C2—C1—Br1119.8 (5)O2—C9—C8122.0 (5)
C3—C2—C1119.6 (6)O2—C9—C10122.6 (5)
C3—C2—H2120.2C8—C9—C10115.4 (5)
C1—C2—H2120.2C9—C10—C11113.1 (4)
C2—C3—C4120.3 (6)C9—C10—C5109.1 (4)
C2—C3—H3119.8C11—C10—C5111.1 (4)
C4—C3—H3119.8C9—C10—H10107.8
O1—C4—C3116.4 (5)C11—C10—H10107.8
O1—C4—C12122.0 (5)C5—C10—H10107.8
C3—C4—C12121.5 (5)C12—C11—C10110.8 (4)
O1—C5—C6106.3 (5)C12—C11—C14111.4 (4)
O1—C5—C10108.8 (4)C10—C11—C14110.8 (4)
C6—C5—C10111.9 (5)C12—C11—H11107.9
O1—C5—H5109.9C10—C11—H11107.9
C6—C5—H5109.9C14—C11—H11107.9
C10—C5—H5109.9C4—C12—C13116.2 (5)
C7—C6—C5111.7 (5)C4—C12—C11122.0 (5)
C7—C6—H6A109.3C13—C12—C11121.5 (5)
C5—C6—H6A109.3C1—C13—C12123.3 (6)
C7—C6—H6B109.3C1—C13—H13118.3
C5—C6—H6B109.3C12—C13—H13118.3
H6A—C6—H6B107.9N1—C14—C11111.3 (5)
C6—C7—C8111.8 (5)N1—C14—H14A109.4
C6—C7—H7A109.2C11—C14—H14A109.4
C8—C7—H7A109.2N1—C14—H14B109.4
C6—C7—H7B109.2C11—C14—H14B109.4
C8—C7—H7B109.2H14A—C14—H14B108.0
H7A—C7—H7B107.9O4—N1—O3124.0 (6)
C9—C8—C7111.5 (6)O4—N1—C14119.5 (5)
C9—C8—H8A109.3O3—N1—C14116.4 (6)
C7—C8—H8A109.3C4—O1—C5116.7 (4)
C9—C8—H8B109.3
C13—C1—C2—C3−1.3 (11)C5—C10—C11—C14−84.5 (5)
Br1—C1—C2—C3−178.5 (6)O1—C4—C12—C13179.8 (5)
C1—C2—C3—C4−0.6 (11)C3—C4—C12—C13−3.2 (9)
C2—C3—C4—O1−179.9 (6)O1—C4—C12—C11−6.6 (8)
C2—C3—C4—C122.9 (11)C3—C4—C12—C11170.4 (6)
O1—C5—C6—C7−61.4 (7)C10—C11—C12—C4−6.8 (7)
C10—C5—C6—C757.2 (7)C14—C11—C12—C4117.0 (5)
C5—C6—C7—C8−55.4 (7)C10—C11—C12—C13166.4 (4)
C6—C7—C8—C951.6 (7)C14—C11—C12—C13−69.8 (6)
C7—C8—C9—O2128.3 (7)C2—C1—C13—C121.0 (10)
C7—C8—C9—C10−51.1 (7)Br1—C1—C13—C12178.1 (4)
O2—C9—C10—C11−3.6 (8)C4—C12—C13—C11.2 (9)
C8—C9—C10—C11175.8 (5)C11—C12—C13—C1−172.4 (6)
O2—C9—C10—C5−127.8 (6)C12—C11—C14—N1162.8 (4)
C8—C9—C10—C551.6 (6)C10—C11—C14—N1−73.3 (5)
O1—C5—C10—C963.7 (5)C11—C14—N1—O4−25.2 (6)
C6—C5—C10—C9−53.5 (6)C11—C14—N1—O3157.5 (4)
O1—C5—C10—C11−61.7 (5)C3—C4—O1—C5166.4 (6)
C6—C5—C10—C11−178.9 (5)C12—C4—O1—C5−16.5 (8)
C9—C10—C11—C12−83.4 (6)C6—C5—O1—C4170.2 (5)
C5—C10—C11—C1239.7 (6)C10—C5—O1—C449.5 (7)
C9—C10—C11—C14152.4 (5)
D—H···AD—HH···AD···AD—H···A
C3—H3···O1i0.932.713.520 (9)146
C8—H8B···O2ii0.972.593.489 (6)155
C8—H8A···O4iii0.972.543.253 (4)131
C10—H10···O2iv0.982.533.300 (8)135
C11—H11···O3v0.982.593.547 (8)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3⋯O1i 0.932.713.520 (9)146
C8—H8B⋯O2ii 0.972.593.489 (6)155
C8—H8A⋯O4iii 0.972.543.253 (4)131
C10—H10⋯O2iv 0.982.533.300 (8)135
C11—H11⋯O3v 0.982.593.547 (8)165

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  4 in total

Review 1.  Asymmetric organocatalytic domino reactions.

Authors:  Dieter Enders; Christoph Grondal; Matthias R M Hüttl
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Organocatalysis: asymmetric cascade reactions catalysed by chiral secondary amines.

Authors:  Xinhong Yu; Wei Wang
Journal:  Org Biomol Chem       Date:  2008-05-19       Impact factor: 3.876

4.  (R)-7-Bromo-2,3,4,4a-tetra-hydro-1H-xanthen-1-one.

Authors:  Ai-Bao Xia; Jie Tang; Jun-Rong Jiang; Yi-Feng Wang; Shu-Ping Luo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08
  4 in total

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