Literature DB >> 21577496

5-[1-(3,4-Dichloro-phen-oxy)eth-yl]-1,3,4-oxadiazole-2(3H)-thione hemihydrate.

Tashfeen Akhtar, M Khawar Rauf, Shahid Hameed, Xiaoming Lu.   

Abstract

In the title compound, C(10)H(8)Cl(2)N(2)O(2)S·0.5H(2)O, the atoms in the oxadiazole ring are essentially coplanar (r.m.s. deviation 0.010 Å). The crystal structure is stabilized by inter-molecular N-H⋯O hydrogen bonds involving the water mol-ecule, which is situated on an a twofold rotation axis, and two organic mol-ecules, leading to a thione tautomer in the solid state. The C atom attached to the oxadiazole ring adopts a typical sp(3) hybridization. The dihedral angle between the mean plane of the benzene ring of the dichloro-phenyl group and the mean plane of the oxadiazole ring is 74.18 (4)°. The crystal structure is stabilized by intermolecular N-H⋯O and O-H⋯S hydrogen bonds.

Entities:  

Year:  2009        PMID: 21577496      PMCID: PMC2970152          DOI: 10.1107/S1600536809029894

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures and properties of oxadiazoles, see: Almasirad et al., (2004 ▶); Aboraia et al. (2006 ▶); Akhtar, Hameed, Al-Masoudi et al. (2008 ▶); Khan et al. (2005 ▶); Akhtar, Hameed et al. (2007 ▶); Akhtar, Hameed, Khan et al. (2008 ▶); Akhtar, Rauf et al. (2007 ▶); Aydogan et al., 2002 ▶). For a related structure, see: Thamotharan et al. (2005 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C10H8Cl2N2O2S·0.5H2O M = 300.15 Monoclinic, a = 11.8725 (2) Å b = 7.89320 (10) Å c = 26.6092 (4) Å β = 92.9130 (10)° V = 2490.38 (6) Å3 Z = 8 Mo Kα radiation μ = 0.68 mm−1 T = 123 K 0.40 × 0.30 × 0.25 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: none 10568 measured reflections 3088 independent reflections 2490 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.078 S = 1.09 3088 reflections 162 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809029894/su2129sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029894/su2129Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8Cl2N2O2S·0.5H2OF(000) = 1224
Mr = 300.15Dx = 1.601 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4427 reflections
a = 11.8725 (2) Åθ = 3.1–28.3°
b = 7.8932 (1) ŵ = 0.68 mm1
c = 26.6092 (4) ÅT = 123 K
β = 92.913 (1)°Block, colorless
V = 2490.38 (6) Å30.40 × 0.30 × 0.25 mm
Z = 8
Bruker SMART CCD area-detector diffractometer2490 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.019
graphiteθmax = 28.3°, θmin = 3.1°
φ and ω scansh = −15→15
10568 measured reflectionsk = −10→10
3088 independent reflectionsl = −35→35
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.078H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0399P)2 + 0.7008P] where P = (Fo2 + 2Fc2)/3
3088 reflections(Δ/σ)max = 0.001
162 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.25873 (7)0.32348 (12)0.33123 (4)0.0347 (2)
C10.26630 (11)0.47444 (17)0.30643 (5)0.0321 (3)
S10.15653 (3)0.59419 (5)0.290316 (15)0.04313 (11)
N10.37606 (9)0.49544 (15)0.30057 (4)0.0373 (3)
H10.40400.58140.28570.045*
N20.44029 (9)0.36407 (16)0.32095 (5)0.0379 (3)
C20.36727 (11)0.26539 (17)0.33892 (5)0.0330 (3)
C30.38524 (12)0.09920 (18)0.36521 (5)0.0381 (3)
H30.46300.06120.36160.046*
C40.30442 (15)−0.0347 (2)0.34486 (6)0.0495 (4)
H4A0.3187−0.13930.36250.074*
H4B0.3148−0.05100.30960.074*
H4C0.22840.00100.34950.074*
O20.36403 (8)0.11531 (14)0.41765 (4)0.0417 (2)
C50.44340 (11)0.18810 (17)0.45029 (5)0.0351 (3)
C60.54468 (11)0.25923 (18)0.43709 (5)0.0374 (3)
H60.56490.25840.40380.045*
C70.61526 (11)0.33147 (19)0.47429 (5)0.0379 (3)
H70.68300.37970.46560.046*
C80.58683 (11)0.33307 (17)0.52386 (5)0.0354 (3)
Cl10.67766 (3)0.42681 (5)0.568937 (14)0.04480 (11)
C90.48523 (12)0.26045 (17)0.53664 (5)0.0360 (3)
Cl20.44427 (3)0.26092 (6)0.598122 (14)0.05328 (13)
C100.41405 (11)0.18835 (18)0.50013 (5)0.0380 (3)
H100.34640.13990.50890.046*
O1W0.50000.75760 (19)0.25000.0457 (4)
H1W0.5445 (15)0.817 (2)0.2687 (7)0.059*
U11U22U33U12U13U23
O10.0320 (4)0.0336 (5)0.0389 (5)0.0003 (4)0.0056 (4)0.0056 (4)
C10.0360 (6)0.0313 (7)0.0291 (6)0.0000 (5)0.0026 (5)−0.0009 (5)
S10.03808 (18)0.0406 (2)0.0504 (2)0.00707 (14)−0.00080 (15)0.00403 (16)
N10.0354 (5)0.0342 (6)0.0425 (6)0.0001 (5)0.0062 (5)0.0078 (5)
N20.0337 (5)0.0384 (6)0.0419 (6)0.0037 (5)0.0046 (5)0.0045 (5)
C20.0349 (6)0.0327 (7)0.0315 (6)0.0034 (5)0.0032 (5)−0.0013 (5)
C30.0434 (7)0.0358 (7)0.0355 (7)0.0051 (6)0.0045 (6)0.0038 (6)
C40.0664 (10)0.0345 (8)0.0473 (9)−0.0019 (7)−0.0005 (7)0.0028 (7)
O20.0414 (5)0.0494 (6)0.0344 (5)−0.0037 (4)0.0027 (4)0.0062 (4)
C50.0356 (6)0.0341 (7)0.0356 (7)0.0075 (5)0.0025 (5)0.0065 (6)
C60.0361 (7)0.0437 (8)0.0328 (7)0.0066 (6)0.0058 (5)0.0059 (6)
C70.0335 (6)0.0409 (8)0.0400 (7)0.0065 (6)0.0065 (5)0.0052 (6)
C80.0361 (6)0.0332 (7)0.0371 (7)0.0098 (5)0.0019 (5)0.0023 (6)
Cl10.04519 (19)0.0466 (2)0.0423 (2)0.00724 (15)−0.00057 (14)−0.00463 (16)
C90.0402 (7)0.0363 (7)0.0321 (7)0.0119 (6)0.0074 (5)0.0071 (6)
Cl20.0564 (2)0.0696 (3)0.03508 (19)0.00834 (19)0.01402 (16)0.00641 (18)
C100.0364 (7)0.0380 (8)0.0401 (7)0.0051 (6)0.0078 (6)0.0096 (6)
O1W0.0431 (8)0.0329 (8)0.0612 (10)0.0000.0048 (7)0.000
O1—C11.3672 (16)O2—C51.3745 (17)
O1—C21.3733 (15)C5—C101.3882 (19)
C1—N11.3306 (16)C5—C61.3884 (19)
C1—S11.6489 (13)C6—C71.387 (2)
N1—N21.3817 (16)C6—H60.9300
N1—H10.8600C7—C81.3783 (19)
N2—C21.2763 (18)C7—H70.9300
C2—C31.4967 (19)C8—C91.3931 (19)
C3—O21.4363 (17)C8—Cl11.7371 (15)
C3—C41.509 (2)C9—C101.378 (2)
C3—H30.9800C9—Cl21.7302 (14)
C4—H4A0.9600C10—H100.9300
C4—H4B0.9600O1W—H1W0.846 (17)
C4—H4C0.9600
C1—O1—C2106.18 (10)H4A—C4—H4C109.5
N1—C1—O1104.71 (11)H4B—C4—H4C109.5
N1—C1—S1131.59 (11)C5—O2—C3120.17 (10)
O1—C1—S1123.69 (9)O2—C5—C10114.02 (12)
C1—N1—N2112.63 (11)O2—C5—C6125.73 (12)
C1—N1—H1123.7C10—C5—C6120.25 (14)
N2—N1—H1123.7C7—C6—C5119.04 (13)
C2—N2—N1103.48 (10)C7—C6—H6120.5
N2—C2—O1112.99 (12)C5—C6—H6120.5
N2—C2—C3128.79 (12)C8—C7—C6121.23 (13)
O1—C2—C3118.20 (11)C8—C7—H7119.4
O2—C3—C2110.40 (11)C6—C7—H7119.4
O2—C3—C4105.72 (12)C7—C8—C9119.15 (13)
C2—C3—C4111.92 (12)C7—C8—Cl1119.41 (11)
O2—C3—H3109.6C9—C8—Cl1121.44 (10)
C2—C3—H3109.6C10—C9—C8120.36 (12)
C4—C3—H3109.6C10—C9—Cl2118.41 (11)
C3—C4—H4A109.5C8—C9—Cl2121.22 (11)
C3—C4—H4B109.5C9—C10—C5119.97 (13)
H4A—C4—H4B109.5C9—C10—H10120.0
C3—C4—H4C109.5C5—C10—H10120.0
D—H···AD—HH···AD···AD—H···A
N1—H1···O1W0.862.062.9084 (16)168
O1W—H1W···S1i0.846 (17)2.612 (18)3.3854 (13)152.5 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1W0.862.062.9084 (16)168
O1W—H1W⋯S1i0.846 (17)2.612 (18)3.3854 (13)152.5 (17)

Symmetry code: (i) .

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