Literature DB >> 21202177

(meso-5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetra-azacyclo-tetra-deca-ne)nickel(II) bis-(O,O'-dibenzyl dithio-phosphate).

Bin Xie1, Li-Ke Zou, Yi-Guo He, Jian-Shen Feng, Xiu-Lan Zhang.   

Abstract

In the title salt-type 1:2 adduct, [Ni(C(16)H(36)N(4))](C(14)H(14)O(2)PS(2))(2) or [Ni(tet-a)][S(2)P(OCH(2)Ph)(2)](2), where tet-a is meso-5,5,7,12,12,14-hexa-methyl-1,4,8,11-tetra-azacyclo-tetra-decane, the [Ni(tet-a)](2+) complex cation exhibits a relatively undistorted square-planar geometry about the Ni atom, which lies on an inversion centre and is coordinated by four macrocyclic N atoms. The two O,O'-bis-(2-phenyl-meth-yl) dithio-phosphate anions act as counter-ions to balance the charge and they inter-act with the complex through N-H⋯S hydrogen bonds. Important geometric data include Ni-N distances of 1.958 (3) and 1.963 (3) Å.

Entities:  

Year:  2008        PMID: 21202177      PMCID: PMC2961295          DOI: 10.1107/S1600536808008398

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Burchell et al. (2000 ▶); Ali et al. (2004 ▶); Allen (2002 ▶); Li et al. (2006 ▶); Liu et al. (1997 ▶).

Experimental

Crystal data

[Ni(C16H36N4)](C14H14O2PS2)2 M = 961.88 Monoclinic, a = 16.371 (5) Å b = 14.917 (5) Å c = 9.964 (4) Å β = 103.11 (3)° V = 2369.9 (15) Å3 Z = 2 Mo Kα radiation μ = 0.70 mm−1 T = 290 (2) K 0.40 × 0.38 × 0.36 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.768, T max = 0.787 5571 measured reflections 4393 independent reflections 2880 reflections with I > 2σ(I) R int = 0.021 3 standard reflections every 300 reflections intensity decay: 1.1%

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.127 S = 1.01 4393 reflections 275 parameters H-atom parameters constrained Δρmax = 0.52 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808008398/dn2324sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808008398/dn2324Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C16H36N4)](C14H14O2PS2)2F000 = 1020
Mr = 961.88Dx = 1.348 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 19 reflections
a = 16.371 (5) Åθ = 4.4–5.5º
b = 14.917 (5) ŵ = 0.70 mm1
c = 9.964 (4) ÅT = 290 (2) K
β = 103.11 (3)ºBlock, red
V = 2369.9 (15) Å30.40 × 0.38 × 0.36 mm
Z = 2
Enraf–Nonius CAD-4 diffractometerRint = 0.021
Radiation source: fine-focus sealed tubeθmax = 25.5º
Monochromator: graphiteθmin = 1.3º
T = 290(2) Kh = −7→19
ω/2θ scansk = −18→0
Absorption correction: ψ scan(North et al., 1968)l = −12→11
Tmin = 0.768, Tmax = 0.7873 standard reflections
5571 measured reflections every 300 reflections
4393 independent reflections intensity decay: 1.1%
2880 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.127  w = 1/[σ2(Fo2) + (0.0689P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
4393 reflectionsΔρmax = 0.52 e Å3
275 parametersΔρmin = −0.34 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.50000.50000.00000.02975 (18)
S10.39590 (6)0.45749 (7)0.26928 (12)0.0569 (3)
S20.28652 (6)0.64383 (7)0.13356 (11)0.0498 (3)
P10.29136 (6)0.52753 (7)0.22790 (10)0.0406 (3)
O10.26427 (15)0.53665 (18)0.3726 (3)0.0509 (7)
O20.21601 (15)0.47114 (17)0.1325 (3)0.0521 (7)
N10.57052 (16)0.53521 (17)0.1790 (3)0.0341 (7)
H10.53570.52940.23790.041*
N20.55476 (16)0.38269 (17)0.0308 (3)0.0332 (6)
H20.59750.3845−0.01380.040*
C10.6346 (2)0.4648 (2)0.2251 (4)0.0543 (12)
H1A0.65390.46630.32450.065*
H1B0.68240.47470.18440.065*
C20.5955 (2)0.3765 (2)0.1806 (4)0.0478 (10)
H2A0.55400.36190.23300.057*
H2B0.63780.32980.19600.057*
C30.5074 (2)0.2981 (2)−0.0165 (3)0.0353 (8)
H30.46360.29130.03540.042*
C40.4652 (2)0.3050 (2)−0.1675 (4)0.0397 (9)
H4A0.44390.2462−0.19890.048*
H4B0.50770.3204−0.21740.048*
C50.5636 (2)0.2146 (2)0.0096 (4)0.0452 (9)
H5A0.60670.2194−0.04130.068*
H5B0.53040.1621−0.01970.068*
H5C0.58890.21010.10620.068*
C60.6063 (2)0.6282 (2)0.2081 (4)0.0359 (8)
C70.6734 (2)0.6441 (3)0.1263 (4)0.0542 (11)
H7A0.65230.62620.03230.081*
H7B0.72250.60960.16580.081*
H7C0.68770.70660.12930.081*
C80.6443 (2)0.6385 (3)0.3636 (4)0.0543 (11)
H8A0.66020.69980.38380.081*
H8B0.69280.60080.38960.081*
H8C0.60350.62120.41440.081*
C90.1889 (3)0.5872 (3)0.3782 (4)0.0624 (12)
H9A0.14460.57360.29820.075*
H9B0.20030.65100.37830.075*
C100.1620 (2)0.5621 (3)0.5064 (4)0.0511 (10)
C110.1766 (3)0.6179 (3)0.6203 (5)0.0639 (12)
H110.20200.67340.61750.077*
C120.1527 (3)0.5897 (5)0.7399 (5)0.0884 (18)
H120.16230.62660.81710.106*
C130.1153 (4)0.5082 (6)0.7433 (7)0.103 (2)
H130.09950.48990.82300.123*
C140.1010 (4)0.4537 (5)0.6318 (8)0.108 (2)
H140.07590.39800.63490.130*
C150.1237 (3)0.4810 (4)0.5149 (6)0.0822 (15)
H150.11300.44350.43830.099*
C160.2008 (2)0.3800 (3)0.1649 (5)0.0604 (12)
H16A0.19530.37560.25960.072*
H16B0.24730.34250.15420.072*
C170.1214 (2)0.3495 (2)0.0688 (4)0.0472 (10)
C180.0461 (3)0.3895 (3)0.0682 (5)0.0681 (13)
H180.04390.43650.12870.082*
C19−0.0272 (3)0.3613 (4)−0.0213 (5)0.0795 (16)
H19−0.07810.3884−0.01930.095*
C20−0.0245 (3)0.2952 (4)−0.1100 (6)0.0853 (18)
H20−0.07380.2751−0.16820.102*
C210.0503 (4)0.2567 (4)−0.1159 (6)0.108 (2)
H210.05220.2126−0.18110.130*
C220.1229 (3)0.2831 (3)−0.0256 (6)0.0808 (16)
H220.17340.2557−0.02860.097*
U11U22U33U12U13U23
Ni10.0297 (3)0.0263 (3)0.0308 (3)0.0014 (2)0.0017 (2)0.0013 (3)
S10.0404 (5)0.0557 (6)0.0758 (8)0.0085 (5)0.0157 (5)0.0121 (6)
S20.0506 (6)0.0459 (6)0.0535 (6)−0.0007 (4)0.0129 (5)0.0074 (5)
P10.0349 (5)0.0421 (5)0.0440 (6)−0.0003 (4)0.0070 (4)0.0019 (4)
O10.0459 (14)0.0648 (17)0.0443 (16)0.0157 (13)0.0152 (12)0.0131 (13)
O20.0455 (14)0.0413 (14)0.0633 (18)−0.0079 (11)−0.0011 (13)0.0018 (13)
N10.0367 (14)0.0292 (14)0.0336 (16)0.0000 (12)0.0023 (12)0.0011 (12)
N20.0332 (14)0.0297 (15)0.0358 (16)0.0036 (11)0.0059 (12)0.0022 (12)
C10.052 (2)0.037 (2)0.059 (3)0.0101 (17)−0.019 (2)−0.0037 (19)
C20.058 (2)0.035 (2)0.039 (2)0.0084 (17)−0.0113 (18)0.0016 (17)
C30.0396 (18)0.0274 (16)0.038 (2)−0.0049 (14)0.0082 (15)−0.0018 (15)
C40.0458 (19)0.0307 (18)0.041 (2)−0.0024 (15)0.0071 (16)−0.0022 (16)
C50.060 (2)0.0301 (19)0.044 (2)0.0053 (16)0.0098 (18)0.0000 (17)
C60.0390 (18)0.0301 (18)0.037 (2)−0.0041 (14)0.0046 (15)−0.0051 (15)
C70.041 (2)0.056 (2)0.065 (3)−0.0041 (18)0.0109 (19)0.006 (2)
C80.058 (2)0.050 (2)0.045 (2)0.0027 (19)−0.0075 (19)−0.0090 (19)
C90.060 (2)0.075 (3)0.056 (3)0.025 (2)0.020 (2)0.014 (2)
C100.044 (2)0.061 (3)0.050 (3)0.019 (2)0.0147 (18)0.011 (2)
C110.058 (3)0.073 (3)0.060 (3)0.019 (2)0.012 (2)−0.001 (2)
C120.083 (4)0.128 (5)0.055 (3)0.050 (4)0.018 (3)−0.003 (3)
C130.097 (4)0.138 (6)0.091 (5)0.063 (4)0.061 (4)0.053 (5)
C140.114 (5)0.089 (5)0.146 (6)0.021 (4)0.080 (5)0.043 (5)
C150.095 (4)0.077 (4)0.086 (4)−0.002 (3)0.043 (3)0.001 (3)
C160.055 (2)0.039 (2)0.081 (3)−0.0046 (18)0.004 (2)0.005 (2)
C170.043 (2)0.038 (2)0.059 (3)−0.0055 (17)0.0095 (18)0.0008 (19)
C180.060 (3)0.079 (3)0.064 (3)0.020 (2)0.010 (2)−0.016 (3)
C190.043 (2)0.118 (5)0.076 (4)0.011 (3)0.009 (2)0.010 (3)
C200.066 (3)0.060 (3)0.114 (5)−0.018 (3)−0.014 (3)0.002 (3)
C210.113 (5)0.062 (3)0.126 (5)0.007 (3)−0.023 (4)−0.044 (4)
C220.064 (3)0.062 (3)0.109 (4)0.012 (2)0.006 (3)−0.021 (3)
Ni1—N21.958 (3)C7—H7C0.9600
Ni1—N11.963 (3)C8—H8A0.9600
S1—P11.9674 (14)C8—H8B0.9600
S2—P11.9661 (15)C8—H8C0.9600
P1—O11.608 (3)C9—C101.490 (6)
P1—O21.613 (3)C9—H9A0.9700
O1—C91.459 (4)C9—H9B0.9700
O2—C161.432 (4)C10—C151.374 (7)
N1—C11.482 (4)C10—C111.385 (6)
N1—C61.509 (4)C11—C121.400 (7)
N1—H10.9100C11—H110.9300
N2—C21.493 (4)C12—C131.366 (9)
N2—C31.501 (4)C12—H120.9300
N2—H20.9100C13—C141.354 (9)
C1—C21.488 (5)C13—H130.9300
C1—H1A0.9700C14—C151.363 (8)
C1—H1B0.9700C14—H140.9300
C2—H2A0.9700C15—H150.9300
C2—H2B0.9700C16—C171.500 (5)
C3—C41.510 (4)C16—H16A0.9700
C3—C51.535 (4)C16—H16B0.9700
C3—H30.9800C17—C181.369 (5)
C4—C6i1.520 (4)C17—C221.370 (6)
C4—H4A0.9700C18—C191.388 (6)
C4—H4B0.9700C18—H180.9300
C5—H5A0.9600C19—C201.332 (7)
C5—H5B0.9600C19—H190.9300
C5—H5C0.9600C20—C211.366 (7)
C6—C4i1.520 (4)C20—H200.9300
C6—C71.528 (5)C21—C221.376 (6)
C6—C81.541 (5)C21—H210.9300
C7—H7A0.9600C22—H220.9300
C7—H7B0.9600
N2—Ni1—N186.71 (11)C6—C7—H7B109.5
N2i—Ni1—N193.29 (11)H7A—C7—H7B109.5
O1—P1—O2104.07 (15)C6—C7—H7C109.5
O1—P1—S2111.40 (12)H7A—C7—H7C109.5
O2—P1—S2103.65 (11)H7B—C7—H7C109.5
O1—P1—S1105.11 (11)C6—C8—H8A109.5
O2—P1—S1111.05 (11)C6—C8—H8B109.5
S2—P1—S1120.50 (7)H8A—C8—H8B109.5
C9—O1—P1119.1 (2)C6—C8—H8C109.5
C16—O2—P1120.7 (2)H8A—C8—H8C109.5
C1—N1—C6112.0 (2)H8B—C8—H8C109.5
C1—N1—Ni1108.7 (2)O1—C9—C10108.6 (3)
C6—N1—Ni1122.9 (2)O1—C9—H9A110.0
C1—N1—H1103.6C10—C9—H9A110.0
C6—N1—H1103.6O1—C9—H9B110.0
Ni1—N1—H1103.6C10—C9—H9B110.0
C2—N2—C3110.1 (2)H9A—C9—H9B108.3
C2—N2—Ni1107.3 (2)C15—C10—C11118.4 (4)
C3—N2—Ni1121.11 (19)C15—C10—C9120.1 (4)
C2—N2—H2105.8C11—C10—C9121.5 (4)
C3—N2—H2105.8C10—C11—C12119.2 (5)
Ni1—N2—H2105.8C10—C11—H11120.4
N1—C1—C2108.0 (3)C12—C11—H11120.4
N1—C1—H1A110.1C13—C12—C11120.1 (6)
C2—C1—H1A110.1C13—C12—H12119.9
N1—C1—H1B110.1C11—C12—H12119.9
C2—C1—H1B110.1C14—C13—C12120.6 (6)
H1A—C1—H1B108.4C14—C13—H13119.7
C1—C2—N2107.9 (3)C12—C13—H13119.7
C1—C2—H2A110.1C13—C14—C15119.5 (6)
N2—C2—H2A110.1C13—C14—H14120.2
C1—C2—H2B110.1C15—C14—H14120.2
N2—C2—H2B110.1C14—C15—C10122.2 (6)
H2A—C2—H2B108.4C14—C15—H15118.9
N2—C3—C4110.0 (3)C10—C15—H15118.9
N2—C3—C5112.4 (2)O2—C16—C17108.3 (3)
C4—C3—C5110.3 (3)O2—C16—H16A110.0
N2—C3—H3108.0C17—C16—H16A110.0
C4—C3—H3108.0O2—C16—H16B110.0
C5—C3—H3108.0C17—C16—H16B110.0
C3—C4—C6i117.4 (3)H16A—C16—H16B108.4
C3—C4—H4A107.9C18—C17—C22118.0 (4)
C6i—C4—H4A107.9C18—C17—C16121.3 (4)
C3—C4—H4B107.9C22—C17—C16120.6 (4)
C6i—C4—H4B107.9C17—C18—C19121.1 (4)
H4A—C4—H4B107.2C17—C18—H18119.4
C3—C5—H5A109.5C19—C18—H18119.4
C3—C5—H5B109.5C20—C19—C18119.8 (5)
H5A—C5—H5B109.5C20—C19—H19120.1
C3—C5—H5C109.5C18—C19—H19120.1
H5A—C5—H5C109.5C19—C20—C21120.3 (5)
H5B—C5—H5C109.5C19—C20—H20119.8
N1—C6—C4i108.0 (2)C21—C20—H20119.8
N1—C6—C7109.6 (3)C20—C21—C22120.1 (5)
C4i—C6—C7111.1 (3)C20—C21—H21120.0
N1—C6—C8109.6 (3)C22—C21—H21120.0
C4i—C6—C8108.3 (3)C17—C22—C21120.6 (5)
C7—C6—C8110.3 (3)C17—C22—H22119.7
C6—C7—H7A109.5C21—C22—H22119.7
D—H···AD—HH···AD···AD—H···A
N1—H1···S10.912.613.390 (3)144
N2—H2···S2i0.912.503.394 (3)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯S10.912.613.390 (3)144
N2—H2⋯S2i0.912.503.394 (3)169

Symmetry code: (i) .

  3 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  Adducts of meso and racemic 5,5,7,12,12,14-hexamethyl-1,4,8, 11-tetraazacyclotetradecane with trigonally trisubstituted benzene carboxylic acids: supramolecular structures in one and two dimensions

Authors: 
Journal:  Acta Crystallogr B       Date:  2000-12

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total
  3 in total

1.  (meso-5,7,7,12,14,14-Hexamethyl-1,4,8,11-tetra-azacyclo-tetra-deca-4,11-diene)nickel(II) bis-[O,O'-bis(4-methyl-phen-yl) dithio-phosphate].

Authors:  Bin Xie; Yang-Guang Xiang; Li-Ke Zou; Xiu-Li Chang; Chang-You Ji
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

2.  (meso-5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetra-azacyclo-tetra-deca-ne)copper(II) bis-(O,S-dibenzyl dithio-phosphate).

Authors:  Jian-Shen Feng; Li-Ke Zou; Bin Xie; Yu Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

3.  5,5,7,12,12,14-Hexamethyl-1,8-bis-(4-nitro-benz-yl)-1,4,8,11-tetra-aza-cyclo-tetra-deca-ne.

Authors:  K Gayathri; S Sathya; G Usha; G Ramanjaneya Reddy; S Balasubramanian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-14
  3 in total

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