Literature DB >> 21565611

Mapping the NPHP-JBTS-MKS protein network reveals ciliopathy disease genes and pathways.

Liyun Sang1, Julie J Miller, Kevin C Corbit, Rachel H Giles, Matthew J Brauer, Edgar A Otto, Lisa M Baye, Xiaohui Wen, Suzie J Scales, Mandy Kwong, Erik G Huntzicker, Mindan K Sfakianos, Wendy Sandoval, J Fernando Bazan, Priya Kulkarni, Francesc R Garcia-Gonzalo, Allen D Seol, John F O'Toole, Susanne Held, Heiko M Reutter, William S Lane, Muhammad Arshad Rafiq, Abdul Noor, Muhammad Ansar, Akella Radha Rama Devi, Val C Sheffield, Diane C Slusarski, John B Vincent, Daniel A Doherty, Friedhelm Hildebrandt, Jeremy F Reiter, Peter K Jackson.   

Abstract

Nephronophthisis (NPHP), Joubert (JBTS), and Meckel-Gruber (MKS) syndromes are autosomal-recessive ciliopathies presenting with cystic kidneys, retinal degeneration, and cerebellar/neural tube malformation. Whether defects in kidney, retinal, or neural disease primarily involve ciliary, Hedgehog, or cell polarity pathways remains unclear. Using high-confidence proteomics, we identified 850 interactors copurifying with nine NPHP/JBTS/MKS proteins and discovered three connected modules: "NPHP1-4-8" functioning at the apical surface, "NPHP5-6" at centrosomes, and "MKS" linked to Hedgehog signaling. Assays for ciliogenesis and epithelial morphogenesis in 3D renal cultures link renal cystic disease to apical organization defects, whereas ciliary and Hedgehog pathway defects lead to retinal or neural deficits. Using 38 interactors as candidates, linkage and sequencing analysis of 250 patients identified ATXN10 and TCTN2 as new NPHP-JBTS genes, and our Tctn2 mouse knockout shows neural tube and Hedgehog signaling defects. Our study further illustrates the power of linking proteomic networks and human genetics to uncover critical disease pathways.
Copyright © 2011 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21565611      PMCID: PMC3383065          DOI: 10.1016/j.cell.2011.04.019

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  45 in total

1.  Local modeling of global interactome networks.

Authors:  Denise Scholtens; Marc Vidal; Robert Gentleman
Journal:  Bioinformatics       Date:  2005-07-05       Impact factor: 6.937

2.  A core complex of BBS proteins cooperates with the GTPase Rab8 to promote ciliary membrane biogenesis.

Authors:  Maxence V Nachury; Alexander V Loktev; Qihong Zhang; Christopher J Westlake; Johan Peränen; Andreas Merdes; Diane C Slusarski; Richard H Scheller; J Fernando Bazan; Val C Sheffield; Peter K Jackson
Journal:  Cell       Date:  2007-06-15       Impact factor: 41.582

3.  Origin and shaping of the laterality organ in zebrafish.

Authors:  Pablo Oteíza; Mathias Köppen; Miguel L Concha; Carl-Philipp Heisenberg
Journal:  Development       Date:  2008-07-17       Impact factor: 6.868

4.  Joubert syndrome (and related disorders) (OMIM 213300).

Authors:  Melissa A Parisi; Dan Doherty; Phillip F Chance; Ian A Glass
Journal:  Eur J Hum Genet       Date:  2007-03-21       Impact factor: 4.246

5.  A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration.

Authors:  Janghoo Lim; Tong Hao; Chad Shaw; Akash J Patel; Gábor Szabó; Jean-François Rual; C Joseph Fisk; Ning Li; Alex Smolyar; David E Hill; Albert-László Barabási; Marc Vidal; Huda Y Zoghbi
Journal:  Cell       Date:  2006-05-19       Impact factor: 41.582

6.  Large expansion of the ATTCT pentanucleotide repeat in spinocerebellar ataxia type 10.

Authors:  T Matsuura; T Yamagata; D L Burgess; A Rasmussen; R P Grewal; K Watase; M Khajavi; A E McCall; C F Davis; L Zu; M Achari; S M Pulst; E Alonso; J L Noebels; D L Nelson; H Y Zoghbi; T Ashizawa
Journal:  Nat Genet       Date:  2000-10       Impact factor: 38.330

7.  Disruption of intraflagellar transport in adult mice leads to obesity and slow-onset cystic kidney disease.

Authors:  James R Davenport; Amanda J Watts; Venus C Roper; Mandy J Croyle; Thomas van Groen; J Michael Wyss; Tim R Nagy; Robert A Kesterson; Bradley K Yoder
Journal:  Curr Biol       Date:  2007-09-06       Impact factor: 10.834

8.  Ataxin 10 induces neuritogenesis via interaction with G-protein beta2 subunit.

Authors:  Masaaki Waragai; Shinichiro Nagamitsu; Weidong Xu; Yu Jiang Li; Xi Lin; Tetsuo Ashizawa
Journal:  J Neurosci Res       Date:  2006-05-15       Impact factor: 4.164

9.  Functional interactions between the ciliopathy-associated Meckel syndrome 1 (MKS1) protein and two novel MKS1-related (MKSR) proteins.

Authors:  Nathan J Bialas; Peter N Inglis; Chunmei Li; Jon F Robinson; Jeremy D K Parker; Michael P Healey; Erica E Davis; Chrystal D Inglis; Tiina Toivonen; David C Cottell; Oliver E Blacque; Lynne M Quarmby; Nicholas Katsanis; Michel R Leroux
Journal:  J Cell Sci       Date:  2009-02-10       Impact factor: 5.285

10.  Genetic and physical interaction between the NPHP5 and NPHP6 gene products.

Authors:  Tobias Schäfer; Michael Pütz; Soeren Lienkamp; Athina Ganner; Astrid Bergbreiter; Haribaskar Ramachandran; Verena Gieloff; Martin Gerner; Christian Mattonet; Peter G Czarnecki; John A Sayer; Edgar A Otto; Friedhelm Hildebrandt; Albrecht Kramer-Zucker; Gerd Walz
Journal:  Hum Mol Genet       Date:  2008-08-23       Impact factor: 6.150

View more
  308 in total

1.  Centrin depletion causes cyst formation and other ciliopathy-related phenotypes in zebrafish.

Authors:  Benedicte Delaval; Laurence Covassin; Nathan D Lawson; Stephen Doxsey
Journal:  Cell Cycle       Date:  2011-11-15       Impact factor: 4.534

2.  Mutations in C5ORF42 cause Joubert syndrome in the French Canadian population.

Authors:  Myriam Srour; Jeremy Schwartzentruber; Fadi F Hamdan; Luis H Ospina; Lysanne Patry; Damian Labuda; Christine Massicotte; Sylvia Dobrzeniecka; José-Mario Capo-Chichi; Simon Papillon-Cavanagh; Mark E Samuels; Kym M Boycott; Michael I Shevell; Rachel Laframboise; Valérie Désilets; Bruno Maranda; Guy A Rouleau; Jacek Majewski; Jacques L Michaud
Journal:  Am J Hum Genet       Date:  2012-03-15       Impact factor: 11.025

Review 3.  The ciliary transition zone: from morphology and molecules to medicine.

Authors:  Peter G Czarnecki; Jagesh V Shah
Journal:  Trends Cell Biol       Date:  2012-03-06       Impact factor: 20.808

Review 4.  The base of the cilium: roles for transition fibres and the transition zone in ciliary formation, maintenance and compartmentalization.

Authors:  Jeremy F Reiter; Oliver E Blacque; Michel R Leroux
Journal:  EMBO Rep       Date:  2012-06-29       Impact factor: 8.807

5.  Modelling a ciliopathy: Ahi1 knockdown in model systems reveals an essential role in brain, retinal, and renal development.

Authors:  Roslyn J Simms; Ann Marie Hynes; Lorraine Eley; David Inglis; Bill Chaudhry; Helen R Dawe; John A Sayer
Journal:  Cell Mol Life Sci       Date:  2011-09-29       Impact factor: 9.261

6.  Joubert Syndrome in French Canadians and Identification of Mutations in CEP104.

Authors:  Myriam Srour; Fadi F Hamdan; Dianalee McKnight; Erica Davis; Hanna Mandel; Jeremy Schwartzentruber; Brissa Martin; Lysanne Patry; Christina Nassif; Alexandre Dionne-Laporte; Luis H Ospina; Emmanuelle Lemyre; Christine Massicotte; Rachel Laframboise; Bruno Maranda; Damian Labuda; Jean-Claude Décarie; Françoise Rypens; Dorith Goldsher; Catherine Fallet-Bianco; Jean-François Soucy; Anne-Marie Laberge; Catalina Maftei; Kym Boycott; Bernard Brais; Renée-Myriam Boucher; Guy A Rouleau; Nicholas Katsanis; Jacek Majewski; Orly Elpeleg; Mary K Kukolich; Stavit Shalev; Jacques L Michaud
Journal:  Am J Hum Genet       Date:  2015-10-17       Impact factor: 11.025

Review 7.  Mechanism and Regulation of Centriole and Cilium Biogenesis.

Authors:  David K Breslow; Andrew J Holland
Journal:  Annu Rev Biochem       Date:  2019-01-11       Impact factor: 23.643

8.  Eupatilin rescues ciliary transition zone defects to ameliorate ciliopathy-related phenotypes.

Authors:  Yong Joon Kim; Sungsoo Kim; Yooju Jung; Eunji Jung; Ho Jeong Kwon; Joon Kim
Journal:  J Clin Invest       Date:  2018-07-23       Impact factor: 14.808

Review 9.  Primary cilia in the developing and mature brain.

Authors:  Alicia Guemez-Gamboa; Nicole G Coufal; Joseph G Gleeson
Journal:  Neuron       Date:  2014-05-07       Impact factor: 17.173

Review 10.  Sending mixed signals: Cilia-dependent signaling during development and disease.

Authors:  Kelsey H Elliott; Samantha A Brugmann
Journal:  Dev Biol       Date:  2018-03-13       Impact factor: 3.582

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.