Literature DB >> 21558267

Mechanism of a genetically encoded dark-to-bright reporter for caspase activity.

Samantha B Nicholls1, Jun Chu, Genevieve Abbruzzese, Kimberly D Tremblay, Jeanne A Hardy.   

Abstract

Fluorescent proteins have revolutionized modern biology with their ability to report the presence of tagged proteins in living systems. Although several fluorescent proteins have been described in which the excitation and emission properties can be modulated by external triggers, no fluorescent proteins have been described that can be activated from a silent dark state to a bright fluorescent state directly by the activity of an enzyme. We have developed a version of GFP in which fluorescence is completely quenched by appendage of a hydrophobic quenching peptide that tetramerizes GFP and prevents maturation of the chromophore. The fluorescence can be fully restored by catalytic removal of the quenching peptide, making it a robust reporter of proteolysis. We have demonstrated the utility of this uniquely dark state of GFP as a genetically encoded apoptosis reporter that monitors the function of caspases, which catalyze the fate-determining step in programmed cell death. Caspase Activatable-GFP (CA-GFP) can be activated both in vitro and in vivo, resulting in up to a 45-fold increase in fluorescent signal in bacteria and a 3-fold increase in mammalian cells. We used CA-GFP successfully to monitor real-time apoptosis in mammalian cells. This dark state of GFP may ultimately serve as a useful platform for probes of other enzymatic processes.

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Year:  2011        PMID: 21558267      PMCID: PMC3137071          DOI: 10.1074/jbc.M111.221648

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  38 in total

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Journal:  Methods       Date:  1999-04       Impact factor: 3.608

2.  Acid denaturation and refolding of green fluorescent protein.

Authors:  Sawako Enoki; Kimiko Saeki; Kosuke Maki; Kunihiro Kuwajima
Journal:  Biochemistry       Date:  2004-11-09       Impact factor: 3.162

3.  Chromophore formation in green fluorescent protein.

Authors:  B G Reid; G C Flynn
Journal:  Biochemistry       Date:  1997-06-03       Impact factor: 3.162

4.  A combinatorial approach defines specificities of members of the caspase family and granzyme B. Functional relationships established for key mediators of apoptosis.

Authors:  N A Thornberry; T A Rano; E P Peterson; D M Rasper; T Timkey; M Garcia-Calvo; V M Houtzager; P A Nordstrom; S Roy; J P Vaillancourt; K T Chapman; D W Nicholson
Journal:  J Biol Chem       Date:  1997-07-18       Impact factor: 5.157

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Journal:  Nature       Date:  1995-02-23       Impact factor: 49.962

6.  Induction of a common pathway of apoptosis by staurosporine.

Authors:  R Bertrand; E Solary; P O'Connor; K W Kohn; Y Pommier
Journal:  Exp Cell Res       Date:  1994-04       Impact factor: 3.905

7.  Purification and catalytic properties of human caspase family members.

Authors:  M Garcia-Calvo; E P Peterson; D M Rasper; J P Vaillancourt; R Zamboni; D W Nicholson; N A Thornberry
Journal:  Cell Death Differ       Date:  1999-04       Impact factor: 15.828

8.  Rapid protein-folding assay using green fluorescent protein.

Authors:  G S Waldo; B M Standish; J Berendzen; T C Terwilliger
Journal:  Nat Biotechnol       Date:  1999-07       Impact factor: 54.908

9.  Crystal structure of the Aequorea victoria green fluorescent protein.

Authors:  M Ormö; A B Cubitt; K Kallio; L A Gross; R Y Tsien; S J Remington
Journal:  Science       Date:  1996-09-06       Impact factor: 47.728

10.  Identification of caspase-3 degradome by two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionization-time of flight analysis.

Authors:  Ah Young Lee; Byoung Chul Park; Mi Jang; Sayeon Cho; Do Hee Lee; Sang Chul Lee; Pyung Keun Myung; Sung Goo Park
Journal:  Proteomics       Date:  2004-11       Impact factor: 3.984

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  25 in total

1.  In vivo imaging of drug-induced mitochondrial outer membrane permeabilization at single-cell resolution.

Authors:  Sarah Earley; Claudio Vinegoni; Joshua Dunham; Rostic Gorbatov; Paolo Fumene Feruglio; Ralph Weissleder
Journal:  Cancer Res       Date:  2012-04-13       Impact factor: 12.701

2.  A revisited folding reporter for quantitative assay of protein misfolding and aggregation in mammalian cells.

Authors:  Simpson Gregoire; Inchan Kwon
Journal:  Biotechnol J       Date:  2012-06-27       Impact factor: 4.677

3.  A Putative Biochemical Engram of Long-Term Memory.

Authors:  Liying Li; Consuelo Perez Sanchez; Brian D Slaughter; Yubai Zhao; Mohammed Repon Khan; Jay R Unruh; Boris Rubinstein; Kausik Si
Journal:  Curr Biol       Date:  2016-11-03       Impact factor: 10.834

4.  Structural basis of fluorescence quenching in caspase activatable-GFP.

Authors:  Samantha B Nicholls; Jeanne A Hardy
Journal:  Protein Sci       Date:  2013-01-10       Impact factor: 6.725

Review 5.  Small Molecule Active Site Directed Tools for Studying Human Caspases.

Authors:  Marcin Poreba; Aleksandra Szalek; Paulina Kasperkiewicz; Wioletta Rut; Guy S Salvesen; Marcin Drag
Journal:  Chem Rev       Date:  2015-11-09       Impact factor: 60.622

Review 6.  Intravital imaging.

Authors:  Mikael J Pittet; Ralph Weissleder
Journal:  Cell       Date:  2011-11-23       Impact factor: 41.582

7.  A fluorescence-activatable reporter of flavivirus NS2B-NS3 protease activity enables live imaging of infection in single cells and viral plaques.

Authors:  Jorge L Arias-Arias; Derek J MacPherson; Maureen E Hill; Jeanne A Hardy; Rodrigo Mora-Rodríguez
Journal:  J Biol Chem       Date:  2020-01-09       Impact factor: 5.157

8.  Detecting Anastasis In Vivo by CaspaseTracker Biosensor.

Authors:  Ho Man Tang; Ming Chiu Fung; Ho Lam Tang
Journal:  J Vis Exp       Date:  2018-02-01       Impact factor: 1.355

9.  A Panel of Protease-Responsive RNA Polymerases Respond to Biochemical Signals by Production of Defined RNA Outputs in Live Cells.

Authors:  Jinyue Pu; Ian Chronis; Daniel Ahn; Bryan C Dickinson
Journal:  J Am Chem Soc       Date:  2015-12-17       Impact factor: 15.419

10.  Rational Design of a GFP-Based Fluorogenic Caspase Reporter for Imaging Apoptosis In Vivo.

Authors:  Tsz-Leung To; Antonino Schepis; Rubén Ruiz-González; Qiang Zhang; Dan Yu; Zhiqiang Dong; Shaun R Coughlin; Xiaokun Shu
Journal:  Cell Chem Biol       Date:  2016-07-21       Impact factor: 8.116

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