Literature DB >> 26551511

Small Molecule Active Site Directed Tools for Studying Human Caspases.

Marcin Poreba1, Aleksandra Szalek1, Paulina Kasperkiewicz1, Wioletta Rut1, Guy S Salvesen2, Marcin Drag1.   

Abstract

Caspases are proteases of clan CD and were described for the first time more than two decades ago. They play critical roles in the control of regulated cell death pathways including apoptosis and inflammation. Due to their involvement in the development of various diseases like cancer, neurodegenerative diseases, or autoimmune disorders, caspases have been intensively investigated as potential drug targets, both in academic and industrial laboratories. This review presents a thorough, deep, and systematic assessment of all technologies developed over the years for the investigation of caspase activity and specificity using substrates and inhibitors, as well as activity based probes, which in recent years have attracted considerable interest due to their usefulness in the investigation of biological functions of this family of enzymes.

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Year:  2015        PMID: 26551511      PMCID: PMC5610424          DOI: 10.1021/acs.chemrev.5b00434

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  408 in total

1.  Imaging of caspase-3 activation in HeLa cells stimulated with etoposide using a novel fluorescent probe.

Authors:  S Mizukami; K Kikuchi; T Higuchi; Y Urano; T Mashima; T Tsuruo; T Nagano
Journal:  FEBS Lett       Date:  1999-06-25       Impact factor: 4.124

2.  Activity-based protein profiling: the serine hydrolases.

Authors:  Y Liu; M P Patricelli; B F Cravatt
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

3.  Detection of protein-protein interaction by bioluminescence resonance energy transfer from firefly luciferase to red fluorescent protein.

Authors:  Ryoichi Arai; Hideyuki Nakagawa; Atsushi Kitayama; Hiroshi Ueda; Teruyuki Nagamune
Journal:  J Biosci Bioeng       Date:  2002       Impact factor: 2.894

4.  Design and synthesis of benzo[c,d]indolone-pyrrolobenzodiazepine conjugates as potential anticancer agents.

Authors:  Ahmed Kamal; G Ramakrishna; V Lakshma Nayak; P Raju; A V Subba Rao; A Viswanath; M V P S Vishnuvardhan; Sistla Ramakrishna; G Srinivas
Journal:  Bioorg Med Chem       Date:  2011-12-14       Impact factor: 3.641

5.  Rapid identification of highly active and selective substrates for stromelysin and matrilysin using bacteriophage peptide display libraries.

Authors:  M M Smith; L Shi; M Navre
Journal:  J Biol Chem       Date:  1995-03-24       Impact factor: 5.157

6.  Detection of caspase activation in situ by fluorochrome-labeled caspase inhibitors.

Authors:  P A Amstad; G Yu; G L Johnson; B W Lee; S Dhawan; D J Phelps
Journal:  Biotechniques       Date:  2001-09       Impact factor: 1.993

7.  Synthesis and evaluation of novel 8,5-fused bicyclic peptidomimetic compounds as interleukin-1beta converting enzyme (ICE) inhibitors.

Authors:  David L Soper; Justin X Sheville; Steven V O'Neil; Yili Wang; Michael C Laufersweiler; Kofi A Oppong; John A Wos; Christopher D Ellis; Mark W Baize; Jack J Chen; Amy N Fancher; Wei Lu; Maureen K Suchanek; Richard L Wang; William P Schwecke; Charles A Cruze; Maria Buchalova; Marina Belkin; Fred Wireko; Amanda Ritter; Biswanath De; Difei Wang; Thomas P Demuth
Journal:  Bioorg Med Chem       Date:  2006-12-01       Impact factor: 3.641

8.  Aspartyl alpha-((1-phenyl-3-(trifluoromethyl)-pyrazol-5-yl)oxy)methyl ketones as interleukin-1 beta converting enzyme inhibitors. Significance of the P1 and P3 amido nitrogens for enzyme-peptide inhibitor binding.

Authors:  R E Dolle; J Singh; J Rinker; D Hoyer; C V Prasad; T L Graybill; J M Salvino; C T Helaszek; R E Miller; M A Ator
Journal:  J Med Chem       Date:  1994-11-11       Impact factor: 7.446

9.  Crystal structure of caspase-2, apical initiator of the intrinsic apoptotic pathway.

Authors:  Andreas Schweizer; Christophe Briand; Markus G Grutter
Journal:  J Biol Chem       Date:  2003-08-14       Impact factor: 5.157

10.  The C. elegans cell death gene ced-3 encodes a protein similar to mammalian interleukin-1 beta-converting enzyme.

Authors:  J Yuan; S Shaham; S Ledoux; H M Ellis; H R Horvitz
Journal:  Cell       Date:  1993-11-19       Impact factor: 41.582

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  22 in total

1.  Development of an advanced nanoformulation for the intracellular delivery of a caspase-3 selective activity-based probe.

Authors:  Francesco Cogo; Marcin Poreba; Wioletta Rut; Katarzyna Groborz; Peter Smyth; Michael C Johnston; Richard Williams; Daniel B Longley; Roberta E Burden; Guy S Salvesen; Marcin Drag; Christopher J Scott
Journal:  Nanoscale       Date:  2019-01-03       Impact factor: 7.790

2.  Caspase selective reagents for diagnosing apoptotic mechanisms.

Authors:  Marcin Poreba; Katarzyna Groborz; Mario Navarro; Scott J Snipas; Marcin Drag; Guy S Salvesen
Journal:  Cell Death Differ       Date:  2018-05-10       Impact factor: 15.828

3.  Integrative X-ray Structure and Molecular Modeling for the Rationalization of Procaspase-8 Inhibitor Potency and Selectivity.

Authors:  Janice H Xu; Jerome Eberhardt; Brianna Hill-Payne; Gonzalo E González-Páez; José Omar Castellón; Benjamin F Cravatt; Stefano Forli; Dennis W Wolan; Keriann M Backus
Journal:  ACS Chem Biol       Date:  2020-01-23       Impact factor: 5.100

4.  Noninvasive optical detection of granzyme B from natural killer cells with enzyme-activated fluorogenic probes.

Authors:  Tomasz Janiszewski; Sonia Kołt; Dion Kaiserman; Scott J Snipas; Shuang Li; Julita Kulbacka; Jolanta Saczko; Niels Bovenschen; Guy Salvesen; Marcin Drąg; Phillip I Bird; Paulina Kasperkiewicz
Journal:  J Biol Chem       Date:  2020-05-21       Impact factor: 5.157

5.  Non-steroidal Anti-inflammatory Drugs Are Caspase Inhibitors.

Authors:  Christina E Smith; Subada Soti; Torey A Jones; Akihisa Nakagawa; Ding Xue; Hang Yin
Journal:  Cell Chem Biol       Date:  2017-02-23       Impact factor: 8.116

6.  Bimodal Fluorescence-Magnetic Resonance Contrast Agent for Apoptosis Imaging.

Authors:  Hao Li; Giacomo Parigi; Claudio Luchinat; Thomas J Meade
Journal:  J Am Chem Soc       Date:  2019-04-04       Impact factor: 15.419

7.  Caspase substrates won't be defined by a four-letter code.

Authors:  Paul J Baker; Seth L Masters
Journal:  J Biol Chem       Date:  2018-05-04       Impact factor: 5.157

8.  Extensive peptide and natural protein substrate screens reveal that mouse caspase-11 has much narrower substrate specificity than caspase-1.

Authors:  Monica L Gonzalez Ramirez; Marcin Poreba; Scott J Snipas; Katarzyna Groborz; Marcin Drag; Guy S Salvesen
Journal:  J Biol Chem       Date:  2018-02-06       Impact factor: 5.157

9.  Potent and selective caspase-2 inhibitor prevents MDM-2 cleavage in reversine-treated colon cancer cells.

Authors:  Marcin Poreba; Wioletta Rut; Katarzyna Groborz; Scott J Snipas; Guy S Salvesen; Marcin Drag
Journal:  Cell Death Differ       Date:  2019-04-11       Impact factor: 15.828

Review 10.  Triazole-Modified Peptidomimetics: An Opportunity for Drug Discovery and Development.

Authors:  Agnieszka Staśkiewicz; Patrycja Ledwoń; Paolo Rovero; Anna Maria Papini; Rafal Latajka
Journal:  Front Chem       Date:  2021-05-20       Impact factor: 5.221

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