Literature DB >> 21551310

Genome sequence of strain IMCC3088, a proteorhodopsin-containing marine bacterium belonging to the OM60/NOR5 clade.

Yoonra Jang1, Hyun-Myung Oh, Ilnam Kang, Kiyoung Lee, Seung-Jo Yang, Jang-Cheon Cho.   

Abstract

Strain IMCC3088, cultivated from the Yellow Sea, is a novel isolate belonging to the OM60/NOR5 clade and is closely related to clone OM241, Congregibacter litoralis, and strain HTCC2080. Here, the genome sequence of strain IMCC3088 is presented, showing the absence of photosynthetic gene clusters and the presence of proteorhodopsin.

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Year:  2011        PMID： 21551310      PMCID： PMC3133269          DOI： 10.1128/JB.05111-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

1.  Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria.

Authors:  Jang-Cheon Cho; Stephen J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2004-01       Impact factor: 4.792

2.  Genome sequences of strains HTCC2148 and HTCC2080, belonging to the OM60/NOR5 clade of the Gammaproteobacteria.

Authors:  J Cameron Thrash; Jang-Cheon Cho; Steve Ferriera; Justin Johnson; Kevin L Vergin; Stephen J Giovannoni
Journal:  J Bacteriol       Date:  2010-05-14       Impact factor: 3.490

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

4.  Biogeography and phylogeny of the NOR5/OM60 clade of Gammaproteobacteria.

Authors:  Shi Yan; Bernhard M Fuchs; Sabine Lenk; Jens Harder; Jörg Wulf; Nian-Zhi Jiao; Rudolf Amann
Journal:  Syst Appl Microbiol       Date:  2009-04       Impact factor: 4.022

5.  Culturability and In situ abundance of pelagic bacteria from the North Sea.

Authors:  H Eilers; J Pernthaler; F O Glöckner; R Amann
Journal:  Appl Environ Microbiol       Date:  2000-07       Impact factor: 4.792

6.  Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis.

Authors:  Bernhard M Fuchs; Stefan Spring; Hanno Teeling; Christian Quast; Jörg Wulf; Martha Schattenhofer; Shi Yan; Steve Ferriera; Justin Johnson; Frank Oliver Glöckner; Rudolf Amann
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-13       Impact factor: 11.205

7.  Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria.

Authors:  Jang-Cheon Cho; Martha D Stapels; Robert M Morris; Kevin L Vergin; Michael S Schwalbach; Scott A Givan; Douglas F Barofsky; Stephen J Giovannoni
Journal:  Environ Microbiol       Date:  2007-06       Impact factor: 5.491

8.  The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov.

Authors:  Stefan Spring; Heinrich Lünsdorf; Bernhard M Fuchs; Brian J Tindall
Journal:  PLoS One       Date:  2009-03-16       Impact factor: 3.240

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

10.  Accurate whole human genome sequencing using reversible terminator chemistry.

Authors:  David R Bentley; Shankar Balasubramanian; Harold P Swerdlow; Geoffrey P Smith; John Milton; Clive G Brown; Kevin P Hall; Dirk J Evers; Colin L Barnes; Helen R Bignell; Jonathan M Boutell; Jason Bryant; Richard J Carter; R Keira Cheetham; Anthony J Cox; Darren J Ellis; Michael R Flatbush; Niall A Gormley; Sean J Humphray; Leslie J Irving; Mirian S Karbelashvili; Scott M Kirk; Heng Li; Xiaohai Liu; Klaus S Maisinger; Lisa J Murray; Bojan Obradovic; Tobias Ost; Michael L Parkinson; Mark R Pratt; Isabelle M J Rasolonjatovo; Mark T Reed; Roberto Rigatti; Chiara Rodighiero; Mark T Ross; Andrea Sabot; Subramanian V Sankar; Aylwyn Scally; Gary P Schroth; Mark E Smith; Vincent P Smith; Anastassia Spiridou; Peta E Torrance; Svilen S Tzonev; Eric H Vermaas; Klaudia Walter; Xiaolin Wu; Lu Zhang; Mohammed D Alam; Carole Anastasi; Ify C Aniebo; David M D Bailey; Iain R Bancarz; Saibal Banerjee; Selena G Barbour; Primo A Baybayan; Vincent A Benoit; Kevin F Benson; Claire Bevis; Phillip J Black; Asha Boodhun; Joe S Brennan; John A Bridgham; Rob C Brown; Andrew A Brown; Dale H Buermann; Abass A Bundu; James C Burrows; Nigel P Carter; Nestor Castillo; Maria Chiara E Catenazzi; Simon Chang; R Neil Cooley; Natasha R Crake; Olubunmi O Dada; Konstantinos D Diakoumakos; Belen Dominguez-Fernandez; David J Earnshaw; Ugonna C Egbujor; David W Elmore; Sergey S Etchin; Mark R Ewan; Milan Fedurco; Louise J Fraser; Karin V Fuentes Fajardo; W Scott Furey; David George; Kimberley J Gietzen; Colin P Goddard; George S Golda; Philip A Granieri; David E Green; David L Gustafson; Nancy F Hansen; Kevin Harnish; Christian D Haudenschild; Narinder I Heyer; Matthew M Hims; Johnny T Ho; Adrian M Horgan; Katya Hoschler; Steve Hurwitz; Denis V Ivanov; Maria Q Johnson; Terena James; T A Huw Jones; Gyoung-Dong Kang; Tzvetana H Kerelska; Alan D Kersey; Irina Khrebtukova; Alex P Kindwall; Zoya Kingsbury; Paula I Kokko-Gonzales; Anil Kumar; Marc A Laurent; Cynthia T Lawley; Sarah E Lee; Xavier Lee; Arnold K Liao; Jennifer A Loch; Mitch Lok; Shujun Luo; Radhika M Mammen; John W Martin; Patrick G McCauley; Paul McNitt; Parul Mehta; Keith W Moon; Joe W Mullens; Taksina Newington; Zemin Ning; Bee Ling Ng; Sonia M Novo; Michael J O'Neill; Mark A Osborne; Andrew Osnowski; Omead Ostadan; Lambros L Paraschos; Lea Pickering; Andrew C Pike; Alger C Pike; D Chris Pinkard; Daniel P Pliskin; Joe Podhasky; Victor J Quijano; Come Raczy; Vicki H Rae; Stephen R Rawlings; Ana Chiva Rodriguez; Phyllida M Roe; John Rogers; Maria C Rogert Bacigalupo; Nikolai Romanov; Anthony Romieu; Rithy K Roth; Natalie J Rourke; Silke T Ruediger; Eli Rusman; Raquel M Sanches-Kuiper; Martin R Schenker; Josefina M Seoane; Richard J Shaw; Mitch K Shiver; Steven W Short; Ning L Sizto; Johannes P Sluis; Melanie A Smith; Jean Ernest Sohna Sohna; Eric J Spence; Kim Stevens; Neil Sutton; Lukasz Szajkowski; Carolyn L Tregidgo; Gerardo Turcatti; Stephanie Vandevondele; Yuli Verhovsky; Selene M Virk; Suzanne Wakelin; Gregory C Walcott; Jingwen Wang; Graham J Worsley; Juying Yan; Ling Yau; Mike Zuerlein; Jane Rogers; James C Mullikin; Matthew E Hurles; Nick J McCooke; John S West; Frank L Oaks; Peter L Lundberg; David Klenerman; Richard Durbin; Anthony J Smith
Journal:  Nature       Date:  2008-11-06       Impact factor: 49.962
  10 in total
  7 in total

1.  Genome sequence of strain HIMB55, a novel marine gammaproteobacterium of the OM60/NOR5 clade.

Authors:  Megan J Huggett; Michael S Rappé
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

2.  Expansion of Cultured Bacterial Diversity by Large-Scale Dilution-to-Extinction Culturing from a Single Seawater Sample.

Authors:  Seung-Jo Yang; Ilnam Kang; Jang-Cheon Cho
Journal:  Microb Ecol       Date:  2015-11-14       Impact factor: 4.552

Review 3.  Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

Authors:  Jarone Pinhassi; Edward F DeLong; Oded Béjà; José M González; Carlos Pedrós-Alió
Journal:  Microbiol Mol Biol Rev       Date:  2016-09-14       Impact factor: 11.056

4.  A taxonomic framework for emerging groups of ecologically important marine gammaproteobacteria based on the reconstruction of evolutionary relationships using genome-scale data.

Authors:  Stefan Spring; Carmen Scheuner; Markus Göker; Hans-Peter Klenk
Journal:  Front Microbiol       Date:  2015-04-09       Impact factor: 5.640

5.  Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of Chromatocurvus halotolerans.

Authors:  Stefan Spring; Thomas Riedel; Cathrin Spröer; Shi Yan; Jens Harder; Bernhard M Fuchs
Journal:  BMC Microbiol       Date:  2013-05-24       Impact factor: 3.605

6.  Function and Evolution of the Sox Multienzyme Complex in the Marine Gammaproteobacterium Congregibacter litoralis.

Authors:  Stefan Spring
Journal:  ISRN Microbiol       Date:  2014-03-31

7.  Spatial patterns of microbial communities across surface waters of the Great Barrier Reef.

Authors:  Pedro R Frade; Bettina Glasl; Samuel A Matthews; Camille Mellin; Ester A Serrão; Kennedy Wolfe; Peter J Mumby; Nicole S Webster; David G Bourne
Journal:  Commun Biol       Date:  2020-08-14
  7 in total

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