Literature DB >> 22374958

Draft genome sequence of marine Streptomyces sp. strain W007, which produces angucyclinone antibiotics with a benz[a]anthracene skeleton.

Song Qin1, Hongyu Zhang, Fuchao Li, Benwei Zhu, Huajun Zheng.   

Abstract

A series of angucyclinone antibiotics have been isolated from marine Streptomyces sp. strain W007 and identified. Here, a draft genome sequence of Streptomyces sp. W007 is presented. The genome contains an intact biosynthetic gene cluster for angucyclinone antibiotics, which provides insight into the combinatorial biosynthesis of angucyclinone antibiotics produced by marine streptomycetes.

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Year:  2012        PMID: 22374958      PMCID: PMC3294854          DOI: 10.1128/JB.06701-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  15 in total

1.  Biosynthetic gene cluster of simocyclinone, a natural multihybrid antibiotic.

Authors:  A Trefzer; S Pelzer; J Schimana; S Stockert; C Bihlmaier; H-P Fiedler; K Welzel; A Vente; A Bechthold
Journal:  Antimicrob Agents Chemother       Date:  2002-05       Impact factor: 5.191

2.  Prediction of lipoprotein signal peptides in Gram-negative bacteria.

Authors:  Agnieszka S Juncker; Hanni Willenbrock; Gunnar Von Heijne; Søren Brunak; Henrik Nielsen; Anders Krogh
Journal:  Protein Sci       Date:  2003-08       Impact factor: 6.725

3.  Improved prediction of signal peptides: SignalP 3.0.

Authors:  Jannick Dyrløv Bendtsen; Henrik Nielsen; Gunnar von Heijne; Søren Brunak
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

4.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

5.  GeneMark.hmm: new solutions for gene finding.

Authors:  A V Lukashin; M Borodovsky
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

6.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

7.  Cloning and analysis of the simocyclinone biosynthetic gene cluster of Streptomyces antibioticus Tü 6040.

Authors:  Ute Galm; Judith Schimana; Hans-Peter Fiedler; Jürgen Schmidt; Shu-Ming Li; Lutz Heide
Journal:  Arch Microbiol       Date:  2002-05-14       Impact factor: 2.552

8.  Genetic organization of the biosynthetic gene cluster for the antitumor angucycline oviedomycin in Streptomyces antibioticus ATCC 11891.

Authors:  Felipe Lombó; Alfredo F Braña; José A Salas; Carmen Méndez
Journal:  Chembiochem       Date:  2004-09-06       Impact factor: 3.164

9.  Cloning and characterization of polyketide synthase genes for jadomycin B biosynthesis in Streptomyces venezuelae ISP5230.

Authors:  L Han; K Yang; E Ramalingam; R H Mosher; L C Vining
Journal:  Microbiology       Date:  1994-12       Impact factor: 2.777

10.  A new anthracene derivative from marine Streptomyces sp. W007 exhibiting highly and selectively cytotoxic activities.

Authors:  Hongyu Zhang; Hongpeng Wang; Hongli Cui; Zonggang Li; Zeping Xie; Yang Pu; Fuchao Li; Song Qin
Journal:  Mar Drugs       Date:  2011-09-09       Impact factor: 6.085

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  3 in total

1.  MbtH homology codes to identify gifted microbes for genome mining.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2013-11-07       Impact factor: 3.346

2.  DoBISCUIT: a database of secondary metabolite biosynthetic gene clusters.

Authors:  Natsuko Ichikawa; Machi Sasagawa; Mika Yamamoto; Hisayuki Komaki; Yumi Yoshida; Shuji Yamazaki; Nobuyuki Fujita
Journal:  Nucleic Acids Res       Date:  2012-11-26       Impact factor: 16.971

3.  High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway.

Authors:  Gro Elin Kjæreng Bjerga; Erik Hjerde; Concetta De Santi; Adele Kim Williamson; Arne Oskar Smalås; Nils Peder Willassen; Bjørn Altermark
Journal:  Stand Genomic Sci       Date:  2014-03-01
  3 in total

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