Literature DB >> 21547518

A comprehensive descriptor of shape: method and application to content-based retrieval of similar appearing lesions in medical images.

Jiajing Xu1, Jessica Faruque, Christopher F Beaulieu, Daniel Rubin, Sandy Napel.   

Abstract

We have developed a method to quantify the shape of liver lesions in CT images and to evaluate its performance for retrieval of images with similarly-shaped lesions. We employed a machine learning method to combine several shape descriptors and defined similarity measures for a pair of shapes as a weighted combination of distances calculated based on each feature. We created a dataset of 144 simulated shapes and established several reference standards for similarity and computed the optimal weights so that the retrieval result agrees best with the reference standard. Then we evaluated our method on a clinical database consisting of 79 portal-venous-phase CT liver images, where we derived a reference standard of similarity from radiologists' visual evaluation. Normalized Discounted Cumulative Gain (NDCG) was calculated to compare this ordering with the expected ordering based on the reference standard. For the simulated lesions, the mean NDCG values ranged from 91% to 100%, indicating that our methods for combining features were very accurate in representing true similarity. For the clinical images, the mean NDCG values were still around 90%, suggesting a strong correlation between the computed similarity and the independent similarity reference derived the radiologists.

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Mesh:

Year:  2012        PMID: 21547518      PMCID: PMC3264721          DOI: 10.1007/s10278-011-9388-8

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  8 in total

Review 1.  Data explosion: the challenge of multidetector-row CT.

Authors:  G D Rubin
Journal:  Eur J Radiol       Date:  2000-11       Impact factor: 3.528

2.  The generalized LASSO.

Authors:  Volker Roth
Journal:  IEEE Trans Neural Netw       Date:  2004-01

Review 3.  A review of content-based image retrieval systems in medical applications-clinical benefits and future directions.

Authors:  Henning Müller; Nicolas Michoux; David Bandon; Antoine Geissbuhler
Journal:  Int J Med Inform       Date:  2004-02       Impact factor: 4.046

4.  Automated retrieval of CT images of liver lesions on the basis of image similarity: method and preliminary results.

Authors:  Sandy A Napel; Christopher F Beaulieu; Cesar Rodriguez; Jingyu Cui; Jiajing Xu; Ankit Gupta; Daniel Korenblum; Hayit Greenspan; Yongjun Ma; Daniel L Rubin
Journal:  Radiology       Date:  2010-05-26       Impact factor: 11.105

5.  Integral invariants for shape matching.

Authors:  Siddharth Manay; Daniel Cremers; Byung-Woo Hong; Anthony J Yezzi; Stefano Soatto
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2006-10       Impact factor: 6.226

Review 6.  Radiology's Achilles' heel: error and variation in the interpretation of the Röntgen image.

Authors:  P J Robinson
Journal:  Br J Radiol       Date:  1997-11       Impact factor: 3.039

7.  Computer-aided image analysis of focal hepatic lesions in ultrasonography: preliminary results.

Authors:  Se Hyung Kim; Jeong Min Lee; Kwang Gi Kim; Jong Hyo Kim; Jae Young Lee; Joon Koo Han; Byung Ihn Choi
Journal:  Abdom Imaging       Date:  2009 Mar-Apr

8.  Classifying mammographic lesions using computerized image analysis.

Authors:  J Kilday; F Palmieri; M D Fox
Journal:  IEEE Trans Med Imaging       Date:  1993       Impact factor: 10.048

  8 in total
  8 in total

1.  Content-based image retrieval in radiology: analysis of variability in human perception of similarity.

Authors:  Jessica Faruque; Christopher F Beaulieu; Jarrett Rosenberg; Daniel L Rubin; Dorcas Yao; Sandy Napel
Journal:  J Med Imaging (Bellingham)       Date:  2015-04-03

2.  Automatic annotation of radiological observations in liver CT images.

Authors:  Francisco Gimenez; Jiajing Xu; Yi Liu; Tiffany Liu; Christopher Beaulieu; Daniel Rubin; Sandy Napel
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

3.  Representation of lesion similarity by use of multidimensional scaling for breast masses on mammograms.

Authors:  Chisako Muramatsu; Kohei Nishimura; Tokiko Endo; Mikinao Oiwa; Misaki Shiraiwa; Kunio Doi; Hiroshi Fujita
Journal:  J Digit Imaging       Date:  2013-08       Impact factor: 4.056

4.  A hierarchical knowledge-based approach for retrieving similar medical images described with semantic annotations.

Authors:  Camille Kurtz; Christopher F Beaulieu; Sandy Napel; Daniel L Rubin
Journal:  J Biomed Inform       Date:  2014-03-12       Impact factor: 6.317

Review 5.  Overview on subjective similarity of images for content-based medical image retrieval.

Authors:  Chisako Muramatsu
Journal:  Radiol Phys Technol       Date:  2018-05-08

6.  Dictionary Pruning with Visual Word Significance for Medical Image Retrieval.

Authors:  Fan Zhang; Yang Song; Weidong Cai; Alexander G Hauptmann; Sidong Liu; Sonia Pujol; Ron Kikinis; Michael J Fulham; David Dagan Feng; Mei Chen
Journal:  Neurocomputing       Date:  2015-11-17       Impact factor: 5.719

Review 7.  Quantitative imaging of cancer in the postgenomic era: Radio(geno)mics, deep learning, and habitats.

Authors:  Sandy Napel; Wei Mu; Bruna V Jardim-Perassi; Hugo J W L Aerts; Robert J Gillies
Journal:  Cancer       Date:  2018-11-01       Impact factor: 6.860

8.  Spatial Characterization of Tumor Perfusion Properties from 3D DCE-US Perfusion Maps are Early Predictors of Cancer Treatment Response.

Authors:  Ahmed El Kaffas; Assaf Hoogi; Jianhua Zhou; Isabelle Durot; Huaijun Wang; Jarrett Rosenberg; Albert Tseng; Hersh Sagreiya; Alireza Akhbardeh; Daniel L Rubin; Aya Kamaya; Dimitre Hristov; Jürgen K Willmann
Journal:  Sci Rep       Date:  2020-04-24       Impact factor: 4.379

  8 in total

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