Literature DB >> 21547015

The Langevin Hull: Constant pressure and temperature dynamics for non-periodic systems.

Charles F Vardeman1, Kelsey M Stocker, J Daniel Gezelter.   

Abstract

We have developed a new isobaric-isothermal (NPT) algorithm which applies an external pressure to the facets comprising the convex hull surrounding the system. A Langevin thermostat is also applied to the facets to mimic contact with an external heat bath. This new method, the "Langevin Hull", can handle heterogeneous mixtures of materials with different compressibilities. These systems are problematic for traditional affine transform methods. The Langevin Hull does not suffer from the edge effects of boundary potential methods, and allows realistic treatment of both external pressure and thermal conductivity due to the presence of an implicit solvent. We apply this method to several different systems including bare metal nanoparticles, nanoparticles in an explicit solvent, as well as clusters of liquid water. The predicted mechanical properties of these systems are in good agreement with experimental data and previous simulation work.

Entities:  

Year:  2011        PMID: 21547015      PMCID: PMC3085464          DOI: 10.1021/ct100670m

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  13 in total

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4.  Constant-pressure and constant-surface tension simulations in dissipative particle dynamics.

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5.  An isothermal-isobaric Langevin thermostat for simulating nanoparticles under pressure: application to Au clusters.

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6.  A consistent experimental and modeling approach to light-scattering studies of protein-protein interactions in solution.

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Journal:  Biophys J       Date:  2005-03-25       Impact factor: 4.033

7.  Is the Ewald summation still necessary? Pairwise alternatives to the accepted standard for long-range electrostatics.

Authors:  Christopher J Fennell; J Daniel Gezelter
Journal:  J Chem Phys       Date:  2006-06-21       Impact factor: 3.488

8.  Total cell protein concentration as an evolutionary constraint on the metabolic control distribution in cells.

Authors:  G C Brown
Journal:  J Theor Biol       Date:  1991-11-21       Impact factor: 2.691

9.  Canonical dynamics: Equilibrium phase-space distributions.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1985-03

10.  Embedded-atom-method functions for the fcc metals Cu, Ag, Au, Ni, Pd, Pt, and their alloys.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1986-06-15
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  1 in total

1.  Binding Preferences of Amino Acids for Gold Nanoparticles: A Molecular Simulation Study.

Authors:  Qing Shao; Carol K Hall
Journal:  Langmuir       Date:  2016-07-27       Impact factor: 3.882

  1 in total

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