Literature DB >> 16821904

Is the Ewald summation still necessary? Pairwise alternatives to the accepted standard for long-range electrostatics.

Christopher J Fennell1, J Daniel Gezelter.   

Abstract

We investigate pairwise electrostatic interaction methods and show that there are viable computationally efficient (O(N)) alternatives to the Ewald summation for typical modern molecular simulations. These methods are extended from the damped and cutoff-neutralized Coulombic sum originally proposed by Wolf et al. [J. Chem. Phys. 110, 8255 (1999)]. One of these, the damped shifted force method, shows a remarkable ability to reproduce the energetic and dynamic characteristics exhibited by simulations employing lattice summation techniques. Comparisons were performed with this and other pairwise methods against the smooth particle-mesh Ewald summation to see how well they reproduce the energetics and dynamics of a variety of molecular simulations.

Year:  2006        PMID: 16821904     DOI: 10.1063/1.2206581

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  57 in total

1.  Regulation of RAS oncogenicity by acetylation.

Authors:  Moon Hee Yang; Seth Nickerson; Eric T Kim; Caroline Liot; Gaelle Laurent; Robert Spang; Mark R Philips; Yibing Shan; David E Shaw; Dafna Bar-Sagi; Marcia C Haigis; Kevin M Haigis
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

2.  A new smoothing function to introduce long-range electrostatic effects in QM/MM calculations.

Authors:  Dong Fang; Robert E Duke; G Andrés Cisneros
Journal:  J Chem Phys       Date:  2015-07-28       Impact factor: 3.488

3.  Interplay of local hydrogen-bonding and long-ranged dipolar forces in simulations of confined water.

Authors:  Jocelyn M Rodgers; John D Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-08       Impact factor: 11.205

Review 4.  Classical electrostatics for biomolecular simulations.

Authors:  G Andrés Cisneros; Mikko Karttunen; Pengyu Ren; Celeste Sagui
Journal:  Chem Rev       Date:  2013-08-27       Impact factor: 60.622

5.  Isotropic periodic sum of electrostatic interactions for polar systems.

Authors:  Xiongwu Wu; Bernard R Brooks
Journal:  J Chem Phys       Date:  2009-07-14       Impact factor: 3.488

6.  Concurrent atomistic and continuum simulation of bi-crystal strontium titanate with tilt grain boundary.

Authors:  Shengfeng Yang; Youping Chen
Journal:  Proc Math Phys Eng Sci       Date:  2015-03-08       Impact factor: 2.704

Review 7.  Theoretical Methods of Domain Structures in Ultrathin Ferroelectric Films: A Review.

Authors:  Jianyi Liu; Weijin Chen; Biao Wang; Yue Zheng
Journal:  Materials (Basel)       Date:  2014-09-12       Impact factor: 3.623

8.  Concurrent coupling of realistic and ideal models of liquids and solids in Hamiltonian adaptive resolution simulations.

Authors:  Maziar Heidari; Robinson Cortes-Huerto; Kurt Kremer; Raffaello Potestio
Journal:  Eur Phys J E Soft Matter       Date:  2018-05-23       Impact factor: 1.890

9.  Spherical tensor multipolar electrostatics and smooth particle mesh Ewald summation: a theoretical study.

Authors:  François Zielinski; Paul L A Popelier
Journal:  J Mol Model       Date:  2014-06-24       Impact factor: 1.810

10.  Charge distribution analysis in Ag(n)(m⁺) clusters: molecular modeling and DFT calculations.

Authors:  Theodor Milek; Tibor Döpper; Christian Neiss; Andreas Görling; Dirk Zahn
Journal:  J Mol Model       Date:  2014-02-22       Impact factor: 1.810

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