Literature DB >> 21543868

Time-of-flight neutron diffraction study of bovine γ-chymotrypsin at the Protein Crystallography Station.

Louis M Lazar1, S Zoe Fisher, Aaron G Moulin, Andrey Kovalevsky, Walter R P Novak, Paul Langan, Gregory A Petsko, Dagmar Ringe.   

Abstract

The overarching goal of this research project is to determine, for a subset of proteins, exact hydrogen positions using neutron diffraction, thereby improving H-atom placement in proteins so that they may be better used in various computational methods that are critically dependent upon said placement. In order to be considered applicable for neutron diffraction studies, the protein of choice must be amenable to ultrahigh-resolution X-ray crystallography, be able to form large crystals (1 mm(3) or greater) and have a modestly sized unit cell (no dimension longer than 100 Å). As such, γ-chymotrypsin is a perfect candidate for neutron diffraction. To understand and probe the role of specific active-site residues and hydrogen-bonding patterns in γ-chymotrypsin, neutron diffraction studies were initiated at the Protein Crystallography Station (PCS) at Los Alamos Neutron Science Center (LANSCE). A large single crystal was subjected to H/D exchange prior to data collection. Time-of-flight neutron diffraction data were collected to 2.0 Å resolution at the PCS with ~85% completeness. Here, the first time-of-flight neutron data collection from γ-chymotrypsin is reported.

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Year:  2011        PMID: 21543868      PMCID: PMC3087647          DOI: 10.1107/S1744309111009341

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  29 in total

1.  The finer things in X-ray diffraction data collection.

Authors:  J W Pflugrath
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

2.  Assessing scoring functions for protein-ligand interactions.

Authors:  Philippe Ferrara; Holger Gohlke; Daniel J Price; Gerhard Klebe; Charles L Brooks
Journal:  J Med Chem       Date:  2004-06-03       Impact factor: 7.446

3.  High-resolution neutron protein crystallography with radically small crystal volumes: application of perdeuteration to human aldose reductase.

Authors:  I Hazemann; M T Dauvergne; M P Blakeley; F Meilleur; M Haertlein; A Van Dorsselaer; A Mitschler; D A A Myles; A Podjarny
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-09-28

4.  Improved R-factors for diffraction data analysis in macromolecular crystallography.

Authors:  K Diederichs; P A Karplus
Journal:  Nat Struct Biol       Date:  1997-04

5.  PK of the lysine amino group at the active site of acetoacetate decarboxylase.

Authors:  D E Schmidt; F H Westheimer
Journal:  Biochemistry       Date:  1971-03-30       Impact factor: 3.162

6.  Ionization behavior of the catalytic carboxyls of lysozyme. Effects of ionic strength.

Authors:  S M Parsons; M A Raftery
Journal:  Biochemistry       Date:  1972-04-25       Impact factor: 3.162

7.  Determination of a low pK for histidine-159 in the S-methylthio derivative of papain by proton nuclear magnetic resonance spectroscopy.

Authors:  F A Johnson; S D Lewis; J A Shafer
Journal:  Biochemistry       Date:  1981-01-06       Impact factor: 3.162

8.  Direct determination of the protonation states of aspartic acid-102 and histidine-57 in the tetrahedral intermediate of the serine proteases: neutron structure of trypsin.

Authors:  A A Kossiakoff; S A Spencer
Journal:  Biochemistry       Date:  1981-10-27       Impact factor: 3.162

9.  Protein crystallography with spallation neutrons.

Authors:  Benno P Schoenborn; Paul Langan
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

Review 10.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
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