Literature DB >> 21536533

Computing steerable principal components of a large set of images and their rotations.

Colin Ponce1, Amit Singer.   

Abstract

We present here an efficient algorithm to compute the Principal Component Analysis (PCA) of a large image set consisting of images and, for each image, the set of its uniform rotations in the plane. We do this by pointing out the block circulant structure of the covariance matrix and utilizing that structure to compute its eigenvectors. We also demonstrate the advantages of this algorithm over similar ones with numerical experiments. Although it is useful in many settings, we illustrate the specific application of the algorithm to the problem of cryo-electron microscopy.

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Year:  2011        PMID: 21536533      PMCID: PMC3719433          DOI: 10.1109/TIP.2011.2147323

Source DB:  PubMed          Journal:  IEEE Trans Image Process        ISSN: 1057-7149            Impact factor:   10.856


  10 in total

Review 1.  Single-particle electron cryo-microscopy: towards atomic resolution.

Authors:  M van Heel; B Gowen; R Matadeen; E V Orlova; R Finn; T Pape; D Cohen; H Stark; R Schmidt; M Schatz; A Patwardhan
Journal:  Q Rev Biophys       Date:  2000-11       Impact factor: 5.318

2.  Computation of quasi-discrete Hankel transforms of integer order for propagating optical wave fields.

Authors:  Manuel Guizar-Sicairos; Julio C Gutiérrez-Vega
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2004-01       Impact factor: 2.129

3.  Classical detection theory and the cryo-EM particle selection problem.

Authors:  Fred J Sigworth
Journal:  J Struct Biol       Date:  2004 Jan-Feb       Impact factor: 2.867

4.  Comments on "optimal approximation of uniformly rotated images: relationship between Karhumen-Loeve expansion and discrete cosine transform".

Authors:  Rae-Hong Park
Journal:  IEEE Trans Image Process       Date:  2002       Impact factor: 10.856

5.  Optimal approximation of uniformly rotated images: relationship between Karhunen-Loeve expansion and discrete cosine transform.

Authors:  M Uenohara; T Kanade
Journal:  IEEE Trans Image Process       Date:  1998       Impact factor: 10.856

6.  Karhunen-Loéve expansion of a set of rotated templates.

Authors:  Matjaz Jogan; Emil Zagar; Ales Leonardis
Journal:  IEEE Trans Image Process       Date:  2003       Impact factor: 10.856

7.  Quasi fast Hankel transform.

Authors:  A E Siegman
Journal:  Opt Lett       Date:  1977-07-01       Impact factor: 3.776

8.  A common-lines based method for determining orientations for N > 3 particle projections simultaneously.

Authors:  P A Penczek; J Zhu; J Frank
Journal:  Ultramicroscopy       Date:  1996-07       Impact factor: 2.689

9.  Use of multivariate statistics in analysing the images of biological macromolecules.

Authors:  M van Heel; J Frank
Journal:  Ultramicroscopy       Date:  1981       Impact factor: 2.689

10.  Viewing Angle Classification of Cryo-Electron Microscopy Images Using Eigenvectors.

Authors:  A Singer; Z Zhao; Y Shkolnisky; R Hadani
Journal:  SIAM J Imaging Sci       Date:  2011-06-23       Impact factor: 2.867

  10 in total
  5 in total

1.  Fourier-Bessel rotational invariant eigenimages.

Authors:  Zhizhen Zhao; Amit Singer
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2013-05-01       Impact factor: 2.129

2.  Steerable Principal Components for Space-Frequency Localized Images.

Authors:  Boris Landa; Yoel Shkolnisky
Journal:  SIAM J Imaging Sci       Date:  2017-04-13       Impact factor: 2.867

3.  Rotationally invariant image representation for viewing direction classification in cryo-EM.

Authors:  Zhizhen Zhao; Amit Singer
Journal:  J Struct Biol       Date:  2014-03-12       Impact factor: 2.867

4.  Viewing Angle Classification of Cryo-Electron Microscopy Images Using Eigenvectors.

Authors:  A Singer; Z Zhao; Y Shkolnisky; R Hadani
Journal:  SIAM J Imaging Sci       Date:  2011-06-23       Impact factor: 2.867

5.  Fast Steerable Principal Component Analysis.

Authors:  Zhizhen Zhao; Yoel Shkolnisky; Amit Singer
Journal:  IEEE Trans Comput Imaging       Date:  2016-01-18
  5 in total

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