Literature DB >> 21524134

Morphology control of hairy nanopores.

Orit Peleg1, Mario Tagliazucchi, Martin Kröger, Yitzhak Rabin, Igal Szleifer.   

Abstract

The properties of polymer layers end-grafted to the inner surface of nanopores connected to solvent reservoirs are studied theoretically as a function of solvent quality and pore geometry. Our systematic study reveals that nanoconfinement is affected by both pore radius and length and that the conformations of the polymer chains strongly depend on their grafting position along the nanopore and on the quality of the solvent. In poor solvent, polymer chains can collapse to the walls, form a compact plug in the pore, or self-assemble into domains of different shape due to microphase separation. The morphology of these domains (aggregates on pore walls or stacked micelles along the pore axis) is mainly determined by the relationship between chain length and pore radius. In other cases the number of aggregates depends on pore length. The presence of reservoirs decreases confinement at pore edges due to the changes in available volume and introduces new organization strategies not available for infinite nanochannels. In good solvent conditions, chains grafted at the pore entrances stretch out of the pore, relieving the internal osmotic pressure and increasing the entropy of the polymers. Our study also addresses the experimentally relevant case of end-grafted chains on the outer walls of the membrane surrounding the nanopore. The effect of these polymer chains on the organization within the nanopore depends on solvent quality. For good solvents the outer chains increase the confinement of the chains at the entrance of the pore; however, the effect does not result in new structures. For poor solvents the presence of the outer polymer layer may lead to changes in the morphology of the microphase-separated domains. Our results show the complex interplay between the different interactions in a confined environment and the need to develop theoretical and experimental tools for their study.

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Year:  2011        PMID: 21524134     DOI: 10.1021/nn200702u

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  18 in total

1.  The Role of Cohesiveness in the Permeability of the Spatial Assemblies of FG Nucleoporins.

Authors:  Chad Gu; Andrei Vovk; Tiantian Zheng; Rob D Coalson; Anton Zilman
Journal:  Biophys J       Date:  2019-03-07       Impact factor: 4.033

2.  Effect of charge, hydrophobicity, and sequence of nucleoporins on the translocation of model particles through the nuclear pore complex.

Authors:  Mario Tagliazucchi; Orit Peleg; Martin Kröger; Yitzhak Rabin; Igal Szleifer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-12       Impact factor: 11.205

3.  Model inspired by nuclear pore complex suggests possible roles for nuclear transport receptors in determining its structure.

Authors:  Dino Osmanović; Ian J Ford; Bart W Hoogenboom
Journal:  Biophys J       Date:  2013-12-17       Impact factor: 4.033

4.  Conformation-dependent translocation of a star polymer through a nanochannel.

Authors:  Zhu Liu; Jiannan Liu; Mengying Xiao; Rong Wang; Yeng-Long Chen
Journal:  Biomicrofluidics       Date:  2014-09-10       Impact factor: 2.800

5.  A Programmable DNA Origami Platform for Organizing Intrinsically Disordered Nucleoporins within Nanopore Confinement.

Authors:  Patrick D Ellis Fisher; Qi Shen; Bernice Akpinar; Luke K Davis; Kenny Kwok Hin Chung; David Baddeley; Anđela Šarić; Thomas J Melia; Bart W Hoogenboom; Chenxiang Lin; C Patrick Lusk
Journal:  ACS Nano       Date:  2018-01-25       Impact factor: 15.881

6.  Physics of the Nuclear Pore Complex: Theory, Modeling and Experiment.

Authors:  Bart W Hoogenboom; Loren E Hough; Edward A Lemke; Roderick Y H Lim; Patrick R Onck; Anton Zilman
Journal:  Phys Rep       Date:  2021-03-24       Impact factor: 30.510

7.  Carbohydrate-actuated nanofluidic diode: switchable current rectification in a nanopipette.

Authors:  Boaz Vilozny; Alexander L Wollenberg; Paolo Actis; Daniel Hwang; Bakthan Singaram; Nader Pourmand
Journal:  Nanoscale       Date:  2013-08-12       Impact factor: 7.790

8.  Cohesiveness tunes assembly and morphology of FG nucleoporin domain meshworks - Implications for nuclear pore permeability.

Authors:  Nico B Eisele; Aksana A Labokha; Steffen Frey; Dirk Görlich; Ralf P Richter
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

9.  A physical model describing the interaction of nuclear transport receptors with FG nucleoporin domain assemblies.

Authors:  Raphael Zahn; Dino Osmanović; Severin Ehret; Carolina Araya Callis; Steffen Frey; Murray Stewart; Changjiang You; Dirk Görlich; Bart W Hoogenboom; Ralf P Richter
Journal:  Elife       Date:  2016-04-08       Impact factor: 8.140

10.  Nanoscale stiffness topography reveals structure and mechanics of the transport barrier in intact nuclear pore complexes.

Authors:  Aizhan Bestembayeva; Armin Kramer; Aksana A Labokha; Dino Osmanović; Ivan Liashkovich; Elena V Orlova; Ian J Ford; Guillaume Charras; Ariberto Fassati; Bart W Hoogenboom
Journal:  Nat Nanotechnol       Date:  2014-11-24       Impact factor: 39.213

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